Wall clock time and date at job start Tue Mar 31 2020 12:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47215 * 2 1 4 4 C 1.53004 * 109.46769 * 119.99565 * 2 1 3 5 5 H 1.09007 * 109.49564 * 300.05051 * 4 2 1 6 6 C 1.53241 * 109.49244 * 180.02562 * 4 2 1 7 7 N 1.47072 * 108.52348 * 186.20863 * 6 4 2 8 8 C 1.34783 * 120.88210 * 231.18639 * 7 6 4 9 9 O 1.21273 * 120.00184 * 359.97438 * 8 7 6 10 10 C 1.50699 * 119.99871 * 179.97438 * 8 7 6 11 11 C 1.50695 * 109.47252 * 180.02562 * 10 8 7 12 12 C 1.37640 * 120.12745 * 265.00259 * 11 10 8 13 13 C 1.38612 * 120.24754 * 179.69883 * 12 11 10 14 14 C 1.38660 * 120.50267 * 0.29710 * 13 12 11 15 15 C 1.37591 * 120.24673 * 359.97438 * 14 13 12 16 16 C 1.40704 * 120.13134 * 85.24660 * 11 10 8 17 17 C 1.41395 * 120.24038 * 0.02562 * 16 11 10 18 18 H 1.08005 * 119.99807 * 334.31006 * 17 16 11 19 19 C 1.39939 * 119.99955 * 154.30805 * 17 16 11 20 20 N 1.30828 * 120.00083 * 343.68013 * 19 17 16 21 21 Si 1.86806 * 120.00187 * 163.67637 * 19 17 16 22 22 H 1.48496 * 109.47060 * 60.00145 * 21 19 17 23 23 H 1.48492 * 109.47055 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.46888 * 300.00240 * 21 19 17 25 25 C 1.47080 * 118.23710 * 51.45479 * 7 6 4 26 26 C 1.53687 * 108.27849 * 308.48888 * 25 7 6 27 27 N 1.46892 * 109.49628 * 60.13807 * 4 2 1 28 28 H 1.09001 * 109.47126 * 300.00486 * 1 2 3 29 29 H 1.09002 * 109.46758 * 60.00500 * 1 2 3 30 30 H 1.09000 * 109.46901 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47635 * 239.99399 * 2 1 3 32 32 H 1.09000 * 109.47144 * 179.97438 * 3 2 1 33 33 H 1.09008 * 109.46607 * 299.99820 * 3 2 1 34 34 H 1.09002 * 109.47310 * 59.99200 * 3 2 1 35 35 H 1.09010 * 109.62745 * 66.49801 * 6 4 2 36 36 H 1.08995 * 109.78814 * 306.01651 * 6 4 2 37 37 H 1.09002 * 109.47170 * 60.00369 * 10 8 7 38 38 H 1.09006 * 109.47492 * 300.00171 * 10 8 7 39 39 H 1.07995 * 119.87799 * 359.97438 * 12 11 10 40 40 H 1.08001 * 119.74995 * 180.27772 * 13 12 11 41 41 H 1.08000 * 119.87699 * 179.97438 * 14 13 12 42 42 H 1.07997 * 120.12793 * 180.02562 * 15 14 13 43 43 H 0.96996 * 119.99685 * 180.02562 * 20 19 17 44 44 H 1.09007 * 109.62632 * 68.25696 * 25 7 6 45 45 H 1.09002 * 109.62771 * 188.83150 * 25 7 6 46 46 H 1.09011 * 109.64980 * 294.07401 * 26 25 7 47 47 H 1.09003 * 109.44594 * 173.95822 * 26 25 7 48 48 H 1.00895 * 111.00047 * 58.91029 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 1 1.6760 -0.2081 2.1396 6 6 3.5723 -0.7210 1.2503 7 7 4.0390 -1.5448 2.3757 8 6 4.9457 -1.0689 3.2521 9 8 5.3882 0.0523 3.1182 10 6 5.4096 -1.9300 4.3985 11 6 6.4149 -1.1689 5.2238 12 6 7.7621 -1.3276 4.9907 13 6 8.6887 -0.6240 5.7441 14 6 8.2714 0.2416 6.7437 15 6 6.9300 0.4116 6.9979 16 6 5.9801 -0.2972 6.2391 17 6 4.5989 -0.1305 6.4914 18 1 3.8809 -0.3084 5.7044 19 6 4.1622 0.2650 7.7607 20 7 4.9679 0.1740 8.7874 21 14 2.4288 0.9230 7.9892 22 1 1.4478 -0.1137 7.5793 23 1 2.2154 1.2700 9.4171 24 1 2.2457 2.1362 7.1526 25 6 3.4946 -2.9039 2.5159 26 6 1.9610 -2.8161 2.4686 27 7 1.5533 -2.1072 1.2483 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 3.9383 0.2993 1.3667 36 1 3.9419 -1.1377 0.3134 37 1 5.8716 -2.8368 4.0080 38 1 4.5558 -2.1965 5.0215 39 1 8.0983 -1.9994 4.2149 40 1 9.7437 -0.7513 5.5514 41 1 9.0022 0.7844 7.3249 42 1 6.6071 1.0867 7.7767 43 1 4.6650 0.4477 9.6673 44 1 3.8541 -3.5285 1.6981 45 1 3.8092 -3.3277 3.4696 46 1 1.5977 -2.2745 3.3421 47 1 1.5399 -3.8215 2.4630 48 1 1.8640 -2.5989 0.4239 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000856488962.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:24 Heat of formation + Delta-G solvation = -25.735562 kcal Electronic energy + Delta-G solvation = -27359.202412 eV Core-core repulsion = 23798.885376 eV Total energy + Delta-G solvation = -3560.317036 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.10785 -38.26465 -37.10318 -35.35762 -33.60513 -32.99836 -31.79989 -30.11582 -29.42794 -27.62557 -26.94029 -25.57461 -24.88819 -23.59442 -21.99241 -20.91763 -20.28073 -20.01458 -18.55203 -17.13659 -16.72068 -15.83829 -15.48769 -15.38952 -15.20339 -14.90728 -14.44813 -14.24277 -13.88808 -13.64965 -13.48283 -13.35475 -13.04092 -12.77960 -12.56730 -12.54986 -12.18146 -11.97207 -11.68526 -11.55077 -11.41879 -11.35967 -11.15291 -11.03875 -10.97288 -10.90738 -10.84254 -10.67145 -10.60024 -10.39315 -9.47043 -9.35254 -9.21903 -9.14192 -9.01733 -8.00659 -7.29733 -7.27142 -6.72121 -4.32736 2.80265 2.95922 3.06661 3.10101 3.27258 3.29489 3.36020 3.94606 4.03314 4.62523 4.67300 4.82219 4.89289 4.95866 5.07697 5.15781 5.21810 5.35182 5.43742 5.56269 5.60306 5.62850 5.75632 5.81518 5.82642 5.86310 5.90824 5.94407 6.01944 6.05617 6.11446 6.26785 6.29124 6.29414 6.42411 6.52481 6.72968 6.81825 6.87317 7.10119 7.23576 7.31208 7.44018 7.63920 7.76475 7.94787 8.08467 8.14807 8.33227 8.66091 8.80866 8.93342 9.03297 10.22110 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.012168 B = 0.004536 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.508815 B = 6171.473254 C = 7295.214923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.084 4.084 3 C -0.152 4.152 4 C 0.078 3.922 5 H 0.086 0.914 6 C 0.080 3.920 7 N -0.629 5.629 8 C 0.519 3.481 9 O -0.519 6.519 10 C -0.067 4.067 11 C -0.182 4.182 12 C -0.081 4.081 13 C -0.239 4.239 14 C -0.107 4.107 15 C -0.159 4.159 16 C 0.130 3.870 17 C -0.456 4.456 18 H 0.072 0.928 19 C 0.078 3.922 20 N -0.795 5.795 21 Si 0.901 3.099 22 H -0.266 1.266 23 H -0.278 1.278 24 H -0.264 1.264 25 C 0.071 3.929 26 C 0.043 3.957 27 N -0.677 5.677 28 H 0.051 0.949 29 H 0.046 0.954 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.097 0.903 36 H 0.057 0.943 37 H 0.073 0.927 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.117 0.883 43 H 0.280 0.720 44 H 0.062 0.938 45 H 0.094 0.906 46 H 0.081 0.919 47 H 0.086 0.914 48 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.167 -5.298 -13.165 16.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.103 4.103 3 C -0.210 4.210 4 C -0.032 4.032 5 H 0.105 0.895 6 C -0.045 4.045 7 N -0.366 5.366 8 C 0.309 3.691 9 O -0.392 6.392 10 C -0.107 4.107 11 C -0.184 4.184 12 C -0.100 4.100 13 C -0.259 4.259 14 C -0.125 4.125 15 C -0.178 4.178 16 C 0.127 3.873 17 C -0.486 4.486 18 H 0.090 0.910 19 C -0.139 4.139 20 N -0.421 5.421 21 Si 0.726 3.274 22 H -0.191 1.191 23 H -0.203 1.203 24 H -0.189 1.189 25 C -0.054 4.054 26 C -0.088 4.088 27 N -0.305 5.305 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.115 0.885 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.114 0.886 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.135 0.865 43 H 0.091 0.909 44 H 0.080 0.920 45 H 0.112 0.888 46 H 0.099 0.901 47 H 0.104 0.896 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.533 -4.472 -12.688 15.931 hybrid contribution 0.253 0.084 0.033 0.268 sum -8.281 -4.388 -12.655 15.747 Atomic orbital electron populations 1.21703 0.94360 1.02425 1.00905 1.21053 0.96687 0.95850 0.96724 1.21910 1.01454 0.95643 1.02008 1.22022 0.92034 0.89743 0.99452 0.89541 1.22279 0.95210 0.98175 0.88830 1.48293 1.44329 1.15087 1.28844 1.21279 0.77417 0.88003 0.82412 1.90665 1.55309 1.19894 1.73364 1.20270 0.99977 0.96710 0.93747 1.19055 0.91762 1.04185 1.03371 1.20288 0.93018 0.98855 0.97807 1.20299 0.96701 1.06007 1.02873 1.20674 0.95779 0.98647 0.97440 1.21286 0.91491 1.02256 1.02800 1.17322 0.93242 0.87597 0.89106 1.19412 0.92536 1.40726 0.95900 0.90988 1.25860 0.99362 0.93102 0.95618 1.69812 1.37038 1.34973 1.00237 0.86476 0.82504 0.80500 0.77917 1.19054 1.20293 1.18891 1.22522 0.95705 0.83984 1.03238 1.22502 0.92590 0.99655 0.94021 1.60665 1.62769 1.02512 1.04599 0.92996 0.93478 0.91531 0.91434 0.92252 0.92544 0.92334 0.88496 0.92503 0.90821 0.88648 0.89874 0.89681 0.89576 0.86542 0.90916 0.91957 0.88756 0.90084 0.89582 0.84566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.04 37.16 0.34 -0.93 16 2 C -0.08 -0.81 2.65 -90.62 -0.24 -1.05 16 3 C -0.15 -1.54 8.85 37.16 0.33 -1.21 16 4 C 0.08 0.91 2.14 -67.59 -0.14 0.77 16 5 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 6 C 0.08 1.09 5.30 -3.61 -0.02 1.07 16 7 N -0.63 -9.67 3.00 -172.19 -0.52 -10.19 16 8 C 0.52 10.43 7.36 -10.98 -0.08 10.34 16 9 O -0.52 -12.69 15.49 5.56 0.09 -12.61 16 10 C -0.07 -1.35 3.55 -29.04 -0.10 -1.45 16 11 C -0.18 -4.44 4.43 -103.91 -0.46 -4.90 16 12 C -0.08 -1.91 9.66 -39.66 -0.38 -2.30 16 13 C -0.24 -5.67 10.05 -39.29 -0.39 -6.06 16 14 C -0.11 -2.65 10.02 -39.66 -0.40 -3.04 16 15 C -0.16 -4.30 8.68 -38.88 -0.34 -4.64 16 16 C 0.13 3.51 5.56 -106.82 -0.59 2.91 16 17 C -0.46 -12.10 8.15 -37.74 -0.31 -12.41 16 18 H 0.07 1.87 6.68 -52.48 -0.35 1.52 16 19 C 0.08 1.97 5.16 -17.34 -0.09 1.88 16 20 N -0.80 -20.64 10.97 55.55 0.61 -20.03 16 21 Si 0.90 19.07 29.59 -169.99 -5.03 14.04 16 22 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 23 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 24 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 25 C 0.07 0.81 6.51 -3.37 -0.02 0.79 16 26 C 0.04 0.44 6.72 -3.47 -0.02 0.42 16 27 N -0.68 -6.81 5.73 -106.20 -0.61 -7.42 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.62 7.61 -51.93 -0.40 0.23 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.64 6.58 -51.93 -0.34 0.30 16 33 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.10 1.56 5.73 -51.92 -0.30 1.26 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 1.25 7.90 -51.93 -0.41 0.84 16 38 H 0.10 1.88 6.57 -51.93 -0.34 1.54 16 39 H 0.08 1.73 8.06 -52.49 -0.42 1.30 16 40 H 0.08 1.78 8.06 -52.49 -0.42 1.36 16 41 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 42 H 0.12 3.23 6.22 -52.49 -0.33 2.90 16 43 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 44 H 0.06 0.61 8.14 -51.92 -0.42 0.18 16 45 H 0.09 1.08 6.02 -51.93 -0.31 0.76 16 46 H 0.08 1.00 8.14 -51.92 -0.42 0.57 16 47 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.34 2.90 8.78 -39.29 -0.35 2.55 16 LS Contribution 375.89 15.07 5.66 5.66 Total: -1.00 -30.52 375.89 -10.48 -41.00 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -7.75 Total: 9.36 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: -2.93 Total: -19.81 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: -0.52 Total: -37.64 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: 0.09 Total: -12.61 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.52 -10.48 -41.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856488962.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.264 kcal (2) G-P(sol) polarization free energy of solvation -30.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds