Wall clock time and date at job start Tue Mar 31 2020 12:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47215 * 2 1 4 4 C 1.53004 * 109.46769 * 119.99565 * 2 1 3 5 5 H 1.09007 * 109.49564 * 300.05051 * 4 2 1 6 6 C 1.53241 * 109.49244 * 180.02562 * 4 2 1 7 7 N 1.47072 * 108.52348 * 186.20863 * 6 4 2 8 8 C 1.34783 * 120.88210 * 231.18639 * 7 6 4 9 9 O 1.21273 * 120.00184 * 359.97438 * 8 7 6 10 10 C 1.50699 * 119.99871 * 179.97438 * 8 7 6 11 11 C 1.50695 * 109.47252 * 180.02562 * 10 8 7 12 12 C 1.37640 * 120.12745 * 265.00259 * 11 10 8 13 13 C 1.38612 * 120.24754 * 179.69883 * 12 11 10 14 14 C 1.38660 * 120.50267 * 0.29710 * 13 12 11 15 15 C 1.37591 * 120.24673 * 359.97438 * 14 13 12 16 16 C 1.40704 * 120.13134 * 85.24660 * 11 10 8 17 17 C 1.41395 * 120.24038 * 0.02562 * 16 11 10 18 18 H 1.08005 * 119.99807 * 334.31006 * 17 16 11 19 19 C 1.39939 * 119.99955 * 154.30805 * 17 16 11 20 20 N 1.30828 * 120.00083 * 343.68013 * 19 17 16 21 21 Si 1.86806 * 120.00187 * 163.67637 * 19 17 16 22 22 H 1.48496 * 109.47060 * 60.00145 * 21 19 17 23 23 H 1.48492 * 109.47055 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.46888 * 300.00240 * 21 19 17 25 25 C 1.47080 * 118.23710 * 51.45479 * 7 6 4 26 26 C 1.53687 * 108.27849 * 308.48888 * 25 7 6 27 27 N 1.46892 * 109.49628 * 60.13807 * 4 2 1 28 28 H 1.09001 * 109.47126 * 300.00486 * 1 2 3 29 29 H 1.09002 * 109.46758 * 60.00500 * 1 2 3 30 30 H 1.09000 * 109.46901 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47635 * 239.99399 * 2 1 3 32 32 H 1.09000 * 109.47144 * 179.97438 * 3 2 1 33 33 H 1.09008 * 109.46607 * 299.99820 * 3 2 1 34 34 H 1.09002 * 109.47310 * 59.99200 * 3 2 1 35 35 H 1.09010 * 109.62745 * 66.49801 * 6 4 2 36 36 H 1.08995 * 109.78814 * 306.01651 * 6 4 2 37 37 H 1.09002 * 109.47170 * 60.00369 * 10 8 7 38 38 H 1.09006 * 109.47492 * 300.00171 * 10 8 7 39 39 H 1.07995 * 119.87799 * 359.97438 * 12 11 10 40 40 H 1.08001 * 119.74995 * 180.27772 * 13 12 11 41 41 H 1.08000 * 119.87699 * 179.97438 * 14 13 12 42 42 H 1.07997 * 120.12793 * 180.02562 * 15 14 13 43 43 H 0.96996 * 119.99685 * 180.02562 * 20 19 17 44 44 H 1.09007 * 109.62632 * 68.25696 * 25 7 6 45 45 H 1.09002 * 109.62771 * 188.83150 * 25 7 6 46 46 H 1.09011 * 109.64980 * 294.07401 * 26 25 7 47 47 H 1.09003 * 109.44594 * 173.95822 * 26 25 7 48 48 H 1.00895 * 111.00047 * 58.91029 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 1 1.6760 -0.2081 2.1396 6 6 3.5723 -0.7210 1.2503 7 7 4.0390 -1.5448 2.3757 8 6 4.9457 -1.0689 3.2521 9 8 5.3882 0.0523 3.1182 10 6 5.4096 -1.9300 4.3985 11 6 6.4149 -1.1689 5.2238 12 6 7.7621 -1.3276 4.9907 13 6 8.6887 -0.6240 5.7441 14 6 8.2714 0.2416 6.7437 15 6 6.9300 0.4116 6.9979 16 6 5.9801 -0.2972 6.2391 17 6 4.5989 -0.1305 6.4914 18 1 3.8809 -0.3084 5.7044 19 6 4.1622 0.2650 7.7607 20 7 4.9679 0.1740 8.7874 21 14 2.4288 0.9230 7.9892 22 1 1.4478 -0.1137 7.5793 23 1 2.2154 1.2700 9.4171 24 1 2.2457 2.1362 7.1526 25 6 3.4946 -2.9039 2.5159 26 6 1.9610 -2.8161 2.4686 27 7 1.5533 -2.1072 1.2483 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 3.9383 0.2993 1.3667 36 1 3.9419 -1.1377 0.3134 37 1 5.8716 -2.8368 4.0080 38 1 4.5558 -2.1965 5.0215 39 1 8.0983 -1.9994 4.2149 40 1 9.7437 -0.7513 5.5514 41 1 9.0022 0.7844 7.3249 42 1 6.6071 1.0867 7.7767 43 1 4.6650 0.4477 9.6673 44 1 3.8541 -3.5285 1.6981 45 1 3.8092 -3.3277 3.4696 46 1 1.5977 -2.2745 3.3421 47 1 1.5399 -3.8215 2.4630 48 1 1.8640 -2.5989 0.4239 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000856488962.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:23 Heat of formation + Delta-G solvation = -43.597438 kcal Electronic energy + Delta-G solvation = -27359.976961 eV Core-core repulsion = 23798.885376 eV Total energy + Delta-G solvation = -3561.091585 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.38452 -39.73491 -38.74602 -36.38696 -35.52767 -34.12341 -33.47909 -31.40681 -31.12663 -28.91266 -28.13517 -27.08968 -26.37980 -24.62601 -23.10239 -22.84488 -21.68560 -21.15812 -19.95679 -19.06195 -18.12553 -17.38999 -16.88229 -16.62408 -16.39753 -16.20441 -15.82250 -15.56486 -15.39744 -15.01870 -14.69764 -14.59861 -14.41438 -14.28268 -13.97102 -13.56013 -13.49469 -13.37546 -13.03586 -12.95401 -12.82464 -12.79225 -12.70018 -12.51846 -12.37441 -12.23593 -12.14594 -11.75129 -11.69422 -11.46380 -11.35177 -11.22421 -11.05838 -10.78160 -10.18466 -9.25526 -9.19510 -9.04243 -8.62333 -6.32069 0.96964 1.10543 1.31823 1.41746 1.50540 1.74670 2.05744 2.16419 2.75458 3.17577 3.61852 3.71067 3.92050 3.93663 4.05066 4.11802 4.18569 4.26613 4.35103 4.37039 4.38037 4.51252 4.56258 4.66327 4.68608 4.74079 4.78692 4.82242 4.83544 4.88933 5.01911 5.03699 5.06700 5.14045 5.16507 5.23872 5.34012 5.44758 5.52150 5.52921 5.58023 5.74318 5.95685 6.00898 6.13277 6.18951 6.39275 6.39893 6.51569 6.70965 6.96564 7.08510 7.31717 8.34082 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.012168 B = 0.004536 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.508815 B = 6171.473254 C = 7295.214923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.077 4.077 3 C -0.152 4.152 4 C 0.089 3.911 5 H 0.054 0.946 6 C 0.079 3.921 7 N -0.621 5.621 8 C 0.517 3.483 9 O -0.576 6.576 10 C -0.063 4.063 11 C -0.189 4.189 12 C -0.092 4.092 13 C -0.242 4.242 14 C -0.117 4.117 15 C -0.194 4.194 16 C 0.097 3.903 17 C -0.482 4.482 18 H 0.066 0.934 19 C 0.039 3.961 20 N -0.824 5.824 21 Si 0.966 3.034 22 H -0.253 1.253 23 H -0.263 1.263 24 H -0.273 1.273 25 C 0.064 3.936 26 C 0.047 3.953 27 N -0.669 5.669 28 H 0.037 0.963 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.041 0.959 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.109 0.891 38 H 0.094 0.906 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.106 0.894 42 H 0.097 0.903 43 H 0.287 0.713 44 H 0.094 0.906 45 H 0.096 0.904 46 H 0.055 0.945 47 H 0.119 0.881 48 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.284 -7.431 -15.280 19.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.096 4.096 3 C -0.210 4.210 4 C -0.022 4.022 5 H 0.072 0.928 6 C -0.045 4.045 7 N -0.356 5.356 8 C 0.306 3.694 9 O -0.455 6.455 10 C -0.102 4.102 11 C -0.191 4.191 12 C -0.110 4.110 13 C -0.261 4.261 14 C -0.135 4.135 15 C -0.213 4.213 16 C 0.095 3.905 17 C -0.511 4.511 18 H 0.084 0.916 19 C -0.176 4.176 20 N -0.450 5.450 21 Si 0.787 3.213 22 H -0.177 1.177 23 H -0.188 1.188 24 H -0.198 1.198 25 C -0.059 4.059 26 C -0.083 4.083 27 N -0.299 5.299 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.106 0.894 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.060 0.940 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.127 0.873 38 H 0.112 0.888 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.124 0.876 42 H 0.115 0.885 43 H 0.097 0.903 44 H 0.112 0.888 45 H 0.114 0.886 46 H 0.074 0.926 47 H 0.137 0.863 48 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -9.678 -6.665 -14.829 18.921 hybrid contribution 0.670 0.686 0.615 1.139 sum -9.008 -5.979 -14.214 17.859 Atomic orbital electron populations 1.21656 0.93678 1.02601 1.00933 1.21028 0.97085 0.95220 0.96281 1.21911 1.00737 0.96308 1.02060 1.21846 0.90323 0.90865 0.99182 0.92804 1.22418 0.96624 0.96556 0.88949 1.48308 1.42641 1.16707 1.27937 1.21217 0.78016 0.87172 0.82946 1.90640 1.57856 1.22061 1.74938 1.20243 0.99195 0.97358 0.93415 1.19543 0.93432 1.03365 1.02712 1.20723 0.92729 0.99201 0.98353 1.20716 0.98478 1.04969 1.01918 1.20953 0.95328 0.99118 0.98111 1.21299 0.92908 1.03402 1.03693 1.17712 0.93707 0.88676 0.90436 1.19523 0.92568 1.42575 0.96463 0.91616 1.26606 1.03220 0.92797 0.94934 1.69867 1.38858 1.35524 1.00756 0.85497 0.77937 0.79538 0.78289 1.17722 1.18756 1.19824 1.22875 0.96446 0.81956 1.04671 1.22507 0.91672 1.00945 0.93180 1.60623 1.62382 1.01652 1.05238 0.94425 0.92021 0.91217 0.89428 0.93370 0.90755 0.94005 0.91577 0.90086 0.87315 0.88795 0.86695 0.86611 0.87582 0.88511 0.90282 0.88778 0.88613 0.92598 0.86294 0.82823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 9.04 71.98 0.65 -1.52 16 2 C -0.08 -1.36 2.65 -10.79 -0.03 -1.39 16 3 C -0.15 -3.02 8.85 71.98 0.64 -2.39 16 4 C 0.09 1.99 2.14 45.00 0.10 2.08 16 5 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 6 C 0.08 2.10 5.30 86.35 0.46 2.55 16 7 N -0.62 -18.53 3.00 -817.06 -2.45 -20.98 16 8 C 0.52 20.87 7.36 87.66 0.65 21.52 16 9 O -0.58 -29.25 15.49 -3.01 -0.05 -29.30 16 10 C -0.06 -2.47 3.55 29.10 0.10 -2.37 16 11 C -0.19 -9.31 4.43 -19.40 -0.09 -9.39 16 12 C -0.09 -4.24 9.66 22.22 0.21 -4.02 16 13 C -0.24 -11.22 10.05 22.46 0.23 -11.00 16 14 C -0.12 -5.87 10.02 22.22 0.22 -5.65 16 15 C -0.19 -10.93 8.68 22.73 0.20 -10.73 16 16 C 0.10 5.43 5.56 -21.29 -0.12 5.32 16 17 C -0.48 -26.63 8.15 23.46 0.19 -26.44 16 18 H 0.07 3.58 6.68 -2.91 -0.02 3.56 16 19 C 0.04 2.04 5.16 85.25 0.44 2.48 16 20 N -0.82 -44.29 10.97 21.83 0.24 -44.05 16 21 Si 0.97 40.05 29.59 68.60 2.03 42.08 16 22 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 23 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 24 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 25 C 0.06 1.29 6.51 86.50 0.56 1.86 16 26 C 0.05 0.85 6.72 86.54 0.58 1.43 16 27 N -0.67 -11.66 5.73 -489.91 -2.81 -14.47 16 28 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.07 1.12 7.61 -2.39 -0.02 1.10 16 31 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.05 1.06 6.58 -2.39 -0.02 1.04 16 33 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 34 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.07 2.21 5.73 -2.38 -0.01 2.20 16 36 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.11 3.43 7.90 -2.39 -0.02 3.41 16 38 H 0.09 3.71 6.57 -2.38 -0.02 3.70 16 39 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 40 H 0.12 4.58 8.06 -2.91 -0.02 4.55 16 41 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 42 H 0.10 5.70 6.22 -2.91 -0.02 5.68 16 43 H 0.29 14.01 8.30 -92.71 -0.77 13.24 16 44 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 45 H 0.10 1.94 6.02 -2.39 -0.01 1.93 16 46 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 47 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 48 H 0.35 4.60 8.78 -89.70 -0.79 3.81 16 Total: -1.00 -70.43 375.89 2.12 -68.31 By element: Atomic # 1 Polarization: 35.90 SS G_CDS: 0.17 Total: 36.06 kcal Atomic # 6 Polarization: -42.65 SS G_CDS: 4.99 Total: -37.65 kcal Atomic # 7 Polarization: -74.48 SS G_CDS: -5.02 Total: -79.50 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: -0.05 Total: -29.30 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 2.03 Total: 42.08 kcal Total: -70.43 2.12 -68.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856488962.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.708 kcal (2) G-P(sol) polarization free energy of solvation -70.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds