Wall clock time and date at job start Tue Mar 31 2020 12:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46749 * 2 1 4 4 C 1.52999 * 109.47229 * 120.00141 * 2 1 3 5 5 H 1.09001 * 109.49368 * 60.05483 * 4 2 1 6 6 C 1.53242 * 109.49047 * 180.13488 * 4 2 1 7 7 N 1.47085 * 108.51748 * 173.78997 * 6 4 2 8 8 C 1.34775 * 120.87708 * 128.79295 * 7 6 4 9 9 O 1.21275 * 120.00584 * 359.97438 * 8 7 6 10 10 C 1.50704 * 119.99638 * 180.02562 * 8 7 6 11 11 C 1.50696 * 109.47167 * 180.02562 * 10 8 7 12 12 C 1.37639 * 120.12836 * 264.72757 * 11 10 8 13 13 C 1.38611 * 120.24747 * 179.70347 * 12 11 10 14 14 C 1.38656 * 120.50306 * 0.59138 * 13 12 11 15 15 C 1.37606 * 120.24781 * 359.68319 * 14 13 12 16 16 C 1.40702 * 120.12742 * 84.99732 * 11 10 8 17 17 C 1.41391 * 120.24266 * 0.02750 * 16 11 10 18 18 H 1.07995 * 120.00052 * 334.57394 * 17 16 11 19 19 C 1.39946 * 119.99906 * 154.58567 * 17 16 11 20 20 N 1.30821 * 120.00147 * 342.82881 * 19 17 16 21 21 Si 1.86801 * 120.00160 * 162.83846 * 19 17 16 22 22 H 1.48503 * 109.47388 * 94.64456 * 21 19 17 23 23 H 1.48502 * 109.47202 * 214.64741 * 21 19 17 24 24 H 1.48507 * 109.46879 * 334.64189 * 21 19 17 25 25 C 1.47079 * 118.23529 * 308.81290 * 7 6 4 26 26 C 1.53239 * 108.52281 * 51.18954 * 25 7 6 27 27 N 1.46898 * 109.49183 * 299.99865 * 4 2 1 28 28 H 1.09003 * 109.47027 * 299.99882 * 1 2 3 29 29 H 1.08996 * 109.47500 * 59.99917 * 1 2 3 30 30 H 1.09004 * 109.47097 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47027 * 240.00118 * 2 1 3 32 32 H 1.09008 * 109.46685 * 180.02562 * 3 2 1 33 33 H 1.08993 * 109.47662 * 300.00085 * 3 2 1 34 34 H 1.09003 * 109.47260 * 60.00261 * 3 2 1 35 35 H 1.08995 * 109.62773 * 293.49546 * 6 4 2 36 36 H 1.08999 * 109.62983 * 53.88682 * 6 4 2 37 37 H 1.09007 * 109.47117 * 299.99712 * 10 8 7 38 38 H 1.08997 * 109.46960 * 59.99867 * 10 8 7 39 39 H 1.07996 * 119.87291 * 359.97438 * 12 11 10 40 40 H 1.08003 * 119.74861 * 180.29844 * 13 12 11 41 41 H 1.07996 * 119.87892 * 179.70531 * 14 13 12 42 42 H 1.07992 * 120.12612 * 180.02562 * 15 14 13 43 43 H 0.96999 * 120.00407 * 180.02562 * 20 19 17 44 44 H 1.09008 * 109.62194 * 170.89666 * 25 7 6 45 45 H 1.08998 * 109.63157 * 291.27627 * 25 7 6 46 46 H 1.09002 * 109.49149 * 186.21138 * 26 25 7 47 47 H 1.09000 * 109.49472 * 66.12695 * 26 25 7 48 48 H 1.00901 * 111.00493 * 301.08628 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6777 -1.7493 1.2491 6 6 3.5724 -0.7186 1.2513 7 7 4.0388 -1.2814 2.5277 8 6 4.9474 -2.2765 2.5540 9 8 5.3912 -2.7200 1.5162 10 6 5.4109 -2.8388 3.8731 11 6 6.4195 -3.9311 3.6269 12 6 6.0175 -5.2469 3.5882 13 6 6.9421 -6.2530 3.3559 14 6 8.2823 -5.9485 3.1721 15 6 8.7078 -4.6405 3.2123 16 6 7.7769 -3.6102 3.4414 17 6 8.2025 -2.2626 3.4853 18 1 7.5084 -1.4692 3.2509 19 6 9.5233 -1.9569 3.8324 20 7 10.2656 -2.8513 4.4328 21 14 10.2265 -0.2717 3.4386 22 1 10.0770 0.6155 4.6200 23 1 11.6657 -0.4033 3.0972 24 1 9.4957 0.3124 2.2852 25 6 3.4870 -0.7297 3.7744 26 6 1.9579 -0.7319 3.6730 27 7 1.5506 -0.0292 2.4490 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9564 0.8900 35 1 3.9408 -1.3280 0.4261 36 1 3.9370 0.3030 1.1433 37 1 5.8707 -2.0468 4.4643 38 1 4.5573 -3.2472 4.4140 39 1 4.9769 -5.4959 3.7351 40 1 6.6170 -7.2824 3.3224 41 1 8.9949 -6.7408 2.9965 42 1 9.7520 -4.4055 3.0685 43 1 11.1810 -2.6394 4.6737 44 1 3.7989 -1.3465 4.6173 45 1 3.8461 0.2899 3.9142 46 1 1.5351 -0.2258 4.5408 47 1 1.5971 -1.7599 3.6393 48 1 1.8595 0.9313 2.4637 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000856488963.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:27 Heat of formation + Delta-G solvation = -22.936785 kcal Electronic energy + Delta-G solvation = -27195.319745 eV Core-core repulsion = 23635.124073 eV Total energy + Delta-G solvation = -3560.195672 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.17552 -38.35445 -37.13371 -35.32434 -33.61440 -32.87024 -31.80938 -30.11185 -29.43038 -27.45643 -27.14888 -25.89919 -24.95413 -23.55964 -22.34915 -20.91879 -20.06154 -19.65459 -18.58952 -17.14704 -16.68376 -15.85005 -15.72472 -15.47358 -15.15203 -15.09835 -14.45072 -14.07428 -13.98672 -13.75154 -13.56360 -13.33800 -13.02037 -12.91530 -12.58342 -12.47385 -12.21767 -11.98835 -11.73747 -11.56811 -11.53235 -11.35504 -11.15770 -11.06101 -10.95479 -10.94204 -10.77540 -10.69806 -10.64117 -10.39096 -9.46723 -9.36695 -9.22389 -9.13354 -9.01308 -8.00974 -7.29965 -7.27541 -6.73458 -4.32767 2.78417 2.95217 3.06343 3.11924 3.27670 3.28895 3.34758 3.93901 4.04813 4.62043 4.66353 4.74527 4.80591 4.95925 4.99048 5.10111 5.16651 5.33205 5.40038 5.53994 5.57049 5.63169 5.70874 5.75784 5.79712 5.81249 5.85728 5.90537 5.97863 6.02286 6.11371 6.18847 6.27401 6.29430 6.42520 6.52618 6.73206 6.81317 6.83989 7.09410 7.19746 7.31145 7.43855 7.63972 7.76863 7.94813 8.08456 8.14876 8.32972 8.65925 8.81536 8.92965 9.03150 10.20814 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.014167 B = 0.003958 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.959471 B = 7072.663785 C = 8167.179907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.087 4.087 3 C -0.154 4.154 4 C 0.080 3.920 5 H 0.084 0.916 6 C 0.077 3.923 7 N -0.628 5.628 8 C 0.519 3.481 9 O -0.519 6.519 10 C -0.067 4.067 11 C -0.182 4.182 12 C -0.081 4.081 13 C -0.240 4.240 14 C -0.106 4.106 15 C -0.160 4.160 16 C 0.129 3.871 17 C -0.456 4.456 18 H 0.072 0.928 19 C 0.078 3.922 20 N -0.794 5.794 21 Si 0.901 3.099 22 H -0.271 1.271 23 H -0.275 1.275 24 H -0.262 1.262 25 C 0.070 3.930 26 C 0.044 3.956 27 N -0.677 5.677 28 H 0.066 0.934 29 H 0.046 0.954 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.093 0.907 36 H 0.064 0.936 37 H 0.095 0.905 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.116 0.884 43 H 0.279 0.721 44 H 0.093 0.907 45 H 0.064 0.936 46 H 0.086 0.914 47 H 0.077 0.923 48 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.933 8.536 -1.902 17.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.107 4.107 3 C -0.211 4.211 4 C -0.031 4.031 5 H 0.102 0.898 6 C -0.048 4.048 7 N -0.365 5.365 8 C 0.309 3.691 9 O -0.392 6.392 10 C -0.107 4.107 11 C -0.184 4.184 12 C -0.099 4.099 13 C -0.259 4.259 14 C -0.125 4.125 15 C -0.180 4.180 16 C 0.127 3.873 17 C -0.486 4.486 18 H 0.090 0.910 19 C -0.139 4.139 20 N -0.420 5.420 21 Si 0.725 3.275 22 H -0.196 1.196 23 H -0.200 1.200 24 H -0.186 1.186 25 C -0.055 4.055 26 C -0.087 4.087 27 N -0.307 5.307 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.111 0.889 36 H 0.082 0.918 37 H 0.113 0.887 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.134 0.866 43 H 0.090 0.910 44 H 0.112 0.888 45 H 0.082 0.918 46 H 0.104 0.896 47 H 0.096 0.904 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -15.051 7.942 -2.380 17.183 hybrid contribution 1.450 0.985 -0.034 1.753 sum -13.601 8.927 -2.414 16.447 Atomic orbital electron populations 1.21694 0.94353 1.01629 1.01666 1.21091 0.96676 0.96130 0.96754 1.21946 1.01106 0.96128 1.01918 1.21949 0.92071 0.98737 0.90296 0.89813 1.22315 0.94998 0.99250 0.88202 1.48267 1.44094 1.38073 1.06026 1.21273 0.77123 0.77897 0.92811 1.90667 1.54610 1.58805 1.35166 1.20269 0.97936 0.98940 0.93532 1.19050 0.94061 0.91618 1.13660 1.20288 0.96538 0.92938 1.00145 1.20298 0.93871 0.96642 1.15094 1.20673 0.94714 0.96116 1.00997 1.21284 1.00010 0.91531 1.05126 1.17323 0.89884 0.93251 0.86830 1.19449 0.95222 0.92907 1.41016 0.90954 1.25866 0.96907 0.98765 0.92409 1.69822 1.08929 1.35266 1.27938 0.86423 0.78811 0.82427 0.79828 1.19608 1.19959 1.18586 1.22432 0.95394 0.99792 0.87897 1.22406 0.92683 1.00485 0.93090 1.60713 1.62752 1.05872 1.01398 0.91456 0.93469 0.93120 0.90801 0.92443 0.92583 0.92305 0.88884 0.91818 0.88732 0.90760 0.89847 0.89669 0.89576 0.86572 0.90970 0.88843 0.91796 0.89576 0.90433 0.84184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.04 37.16 0.34 -0.82 16 2 C -0.09 -0.80 2.80 -90.62 -0.25 -1.05 16 3 C -0.15 -1.26 8.52 37.16 0.32 -0.95 16 4 C 0.08 0.87 2.38 -67.59 -0.16 0.71 16 5 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 6 C 0.08 1.05 5.66 -3.60 -0.02 1.03 16 7 N -0.63 -9.66 3.01 -172.46 -0.52 -10.18 16 8 C 0.52 10.45 7.34 -10.98 -0.08 10.37 16 9 O -0.52 -12.76 15.49 5.56 0.09 -12.68 16 10 C -0.07 -1.34 3.55 -29.03 -0.10 -1.44 16 11 C -0.18 -4.45 4.43 -103.91 -0.46 -4.91 16 12 C -0.08 -1.90 9.66 -39.66 -0.38 -2.28 16 13 C -0.24 -5.67 10.05 -39.29 -0.39 -6.07 16 14 C -0.11 -2.64 10.02 -39.66 -0.40 -3.04 16 15 C -0.16 -4.35 8.69 -38.87 -0.34 -4.68 16 16 C 0.13 3.51 5.57 -106.82 -0.59 2.92 16 17 C -0.46 -12.18 8.15 -37.74 -0.31 -12.49 16 18 H 0.07 1.90 6.66 -52.49 -0.35 1.55 16 19 C 0.08 1.98 5.15 -17.34 -0.09 1.89 16 20 N -0.79 -20.65 10.98 55.55 0.61 -20.04 16 21 Si 0.90 19.05 29.59 -169.99 -5.03 14.02 16 22 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 23 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 24 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 25 C 0.07 0.80 6.48 -3.60 -0.02 0.78 16 26 C 0.04 0.41 6.70 -3.70 -0.02 0.39 16 27 N -0.68 -6.39 5.67 -106.46 -0.60 -7.00 16 28 H 0.07 0.59 7.60 -51.93 -0.39 0.19 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.51 6.30 -51.92 -0.33 0.18 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.45 6.64 -51.93 -0.34 0.10 16 35 H 0.09 1.50 7.06 -51.93 -0.37 1.13 16 36 H 0.06 0.82 6.14 -51.93 -0.32 0.50 16 37 H 0.09 1.87 6.91 -51.93 -0.36 1.51 16 38 H 0.07 1.25 7.57 -51.93 -0.39 0.86 16 39 H 0.08 1.73 8.06 -52.49 -0.42 1.30 16 40 H 0.09 1.79 8.06 -52.48 -0.42 1.36 16 41 H 0.09 1.91 8.06 -52.49 -0.42 1.48 16 42 H 0.12 3.23 6.21 -52.49 -0.33 2.90 16 43 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 44 H 0.09 1.04 6.02 -51.92 -0.31 0.73 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.34 2.92 6.92 -39.29 -0.27 2.65 16 LS Contribution 371.87 15.07 5.60 5.60 Total: -1.00 -30.74 371.87 -10.38 -41.12 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -7.55 Total: 8.79 kcal Atomic # 6 Polarization: -16.66 SS G_CDS: -2.98 Total: -19.64 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: -0.51 Total: -37.22 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: 0.09 Total: -12.68 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.74 -10.38 -41.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856488963.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.187 kcal (2) G-P(sol) polarization free energy of solvation -30.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds