Wall clock time and date at job start Tue Mar 31 2020 12:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46749 * 2 1 4 4 C 1.52999 * 109.47229 * 120.00141 * 2 1 3 5 5 H 1.09001 * 109.49368 * 60.05483 * 4 2 1 6 6 C 1.53242 * 109.49047 * 180.13488 * 4 2 1 7 7 N 1.47085 * 108.51748 * 173.78997 * 6 4 2 8 8 C 1.34775 * 120.87708 * 128.79295 * 7 6 4 9 9 O 1.21275 * 120.00584 * 359.97438 * 8 7 6 10 10 C 1.50704 * 119.99638 * 180.02562 * 8 7 6 11 11 C 1.50696 * 109.47167 * 180.02562 * 10 8 7 12 12 C 1.37639 * 120.12836 * 264.72757 * 11 10 8 13 13 C 1.38611 * 120.24747 * 179.70347 * 12 11 10 14 14 C 1.38656 * 120.50306 * 0.59138 * 13 12 11 15 15 C 1.37606 * 120.24781 * 359.68319 * 14 13 12 16 16 C 1.40702 * 120.12742 * 84.99732 * 11 10 8 17 17 C 1.41391 * 120.24266 * 0.02750 * 16 11 10 18 18 H 1.07995 * 120.00052 * 334.57394 * 17 16 11 19 19 C 1.39946 * 119.99906 * 154.58567 * 17 16 11 20 20 N 1.30821 * 120.00147 * 342.82881 * 19 17 16 21 21 Si 1.86801 * 120.00160 * 162.83846 * 19 17 16 22 22 H 1.48503 * 109.47388 * 94.64456 * 21 19 17 23 23 H 1.48502 * 109.47202 * 214.64741 * 21 19 17 24 24 H 1.48507 * 109.46879 * 334.64189 * 21 19 17 25 25 C 1.47079 * 118.23529 * 308.81290 * 7 6 4 26 26 C 1.53239 * 108.52281 * 51.18954 * 25 7 6 27 27 N 1.46898 * 109.49183 * 299.99865 * 4 2 1 28 28 H 1.09003 * 109.47027 * 299.99882 * 1 2 3 29 29 H 1.08996 * 109.47500 * 59.99917 * 1 2 3 30 30 H 1.09004 * 109.47097 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47027 * 240.00118 * 2 1 3 32 32 H 1.09008 * 109.46685 * 180.02562 * 3 2 1 33 33 H 1.08993 * 109.47662 * 300.00085 * 3 2 1 34 34 H 1.09003 * 109.47260 * 60.00261 * 3 2 1 35 35 H 1.08995 * 109.62773 * 293.49546 * 6 4 2 36 36 H 1.08999 * 109.62983 * 53.88682 * 6 4 2 37 37 H 1.09007 * 109.47117 * 299.99712 * 10 8 7 38 38 H 1.08997 * 109.46960 * 59.99867 * 10 8 7 39 39 H 1.07996 * 119.87291 * 359.97438 * 12 11 10 40 40 H 1.08003 * 119.74861 * 180.29844 * 13 12 11 41 41 H 1.07996 * 119.87892 * 179.70531 * 14 13 12 42 42 H 1.07992 * 120.12612 * 180.02562 * 15 14 13 43 43 H 0.96999 * 120.00407 * 180.02562 * 20 19 17 44 44 H 1.09008 * 109.62194 * 170.89666 * 25 7 6 45 45 H 1.08998 * 109.63157 * 291.27627 * 25 7 6 46 46 H 1.09002 * 109.49149 * 186.21138 * 26 25 7 47 47 H 1.09000 * 109.49472 * 66.12695 * 26 25 7 48 48 H 1.00901 * 111.00493 * 301.08628 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6777 -1.7493 1.2491 6 6 3.5724 -0.7186 1.2513 7 7 4.0388 -1.2814 2.5277 8 6 4.9474 -2.2765 2.5540 9 8 5.3912 -2.7200 1.5162 10 6 5.4109 -2.8388 3.8731 11 6 6.4195 -3.9311 3.6269 12 6 6.0175 -5.2469 3.5882 13 6 6.9421 -6.2530 3.3559 14 6 8.2823 -5.9485 3.1721 15 6 8.7078 -4.6405 3.2123 16 6 7.7769 -3.6102 3.4414 17 6 8.2025 -2.2626 3.4853 18 1 7.5084 -1.4692 3.2509 19 6 9.5233 -1.9569 3.8324 20 7 10.2656 -2.8513 4.4328 21 14 10.2265 -0.2717 3.4386 22 1 10.0770 0.6155 4.6200 23 1 11.6657 -0.4033 3.0972 24 1 9.4957 0.3124 2.2852 25 6 3.4870 -0.7297 3.7744 26 6 1.9579 -0.7319 3.6730 27 7 1.5506 -0.0292 2.4490 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9564 0.8900 35 1 3.9408 -1.3280 0.4261 36 1 3.9370 0.3030 1.1433 37 1 5.8707 -2.0468 4.4643 38 1 4.5573 -3.2472 4.4140 39 1 4.9769 -5.4959 3.7351 40 1 6.6170 -7.2824 3.3224 41 1 8.9949 -6.7408 2.9965 42 1 9.7520 -4.4055 3.0685 43 1 11.1810 -2.6394 4.6737 44 1 3.7989 -1.3465 4.6173 45 1 3.8461 0.2899 3.9142 46 1 1.5351 -0.2258 4.5408 47 1 1.5971 -1.7599 3.6393 48 1 1.8595 0.9313 2.4637 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000856488963.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:26 Heat of formation + Delta-G solvation = -40.796845 kcal Electronic energy + Delta-G solvation = -27196.094215 eV Core-core repulsion = 23635.124073 eV Total energy + Delta-G solvation = -3560.970142 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.189 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.41870 -39.79249 -38.79352 -36.34938 -35.53351 -33.94831 -33.48383 -31.41193 -31.09689 -28.81029 -28.06250 -27.26537 -26.61921 -24.57827 -23.38982 -22.84502 -21.73532 -20.47819 -20.00820 -19.07226 -18.08774 -17.36908 -16.93156 -16.64794 -16.55668 -16.22524 -15.93036 -15.52272 -15.37799 -15.00948 -14.78144 -14.48841 -14.43485 -14.34634 -13.87798 -13.59277 -13.49486 -13.35243 -13.00240 -12.87970 -12.78839 -12.75329 -12.69092 -12.55313 -12.45389 -12.19278 -12.16022 -11.74326 -11.58305 -11.42493 -11.35081 -11.23535 -11.04078 -10.78486 -10.17016 -9.26071 -9.19276 -9.04309 -8.63023 -6.31967 0.96631 1.10157 1.32317 1.43943 1.50496 1.75203 2.04055 2.16882 2.74947 3.23131 3.61929 3.73848 3.90497 3.93968 4.05428 4.12857 4.18417 4.21423 4.31261 4.37110 4.41059 4.52488 4.58731 4.66214 4.68973 4.74170 4.80790 4.84065 4.85075 4.95043 5.03218 5.05462 5.10215 5.12131 5.16268 5.27561 5.33838 5.45556 5.52136 5.57547 5.58577 5.74170 5.97744 6.00848 6.13192 6.18919 6.38892 6.39464 6.47880 6.70758 6.96345 7.08418 7.31442 8.33724 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.014167 B = 0.003958 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.959471 B = 7072.663785 C = 8167.179907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.085 4.085 3 C -0.150 4.150 4 C 0.094 3.906 5 H 0.067 0.933 6 C 0.075 3.925 7 N -0.620 5.620 8 C 0.517 3.483 9 O -0.577 6.577 10 C -0.062 4.062 11 C -0.189 4.189 12 C -0.091 4.091 13 C -0.242 4.242 14 C -0.116 4.116 15 C -0.195 4.195 16 C 0.097 3.903 17 C -0.483 4.483 18 H 0.067 0.933 19 C 0.038 3.962 20 N -0.824 5.824 21 Si 0.970 3.030 22 H -0.253 1.253 23 H -0.266 1.266 24 H -0.270 1.270 25 C 0.062 3.938 26 C 0.051 3.949 27 N -0.669 5.669 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.044 0.956 31 H 0.066 0.934 32 H 0.047 0.953 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.109 0.891 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.106 0.894 42 H 0.097 0.903 43 H 0.287 0.713 44 H 0.099 0.901 45 H 0.079 0.921 46 H 0.118 0.882 47 H 0.069 0.931 48 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.113 10.221 -1.036 19.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.105 4.105 3 C -0.207 4.207 4 C -0.017 4.017 5 H 0.085 0.915 6 C -0.049 4.049 7 N -0.355 5.355 8 C 0.307 3.693 9 O -0.456 6.456 10 C -0.102 4.102 11 C -0.191 4.191 12 C -0.110 4.110 13 C -0.262 4.262 14 C -0.135 4.135 15 C -0.214 4.214 16 C 0.095 3.905 17 C -0.513 4.513 18 H 0.085 0.915 19 C -0.177 4.177 20 N -0.450 5.450 21 Si 0.791 3.209 22 H -0.177 1.177 23 H -0.191 1.191 24 H -0.195 1.195 25 C -0.062 4.062 26 C -0.079 4.079 27 N -0.299 5.299 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.112 0.888 38 H 0.127 0.873 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.124 0.876 42 H 0.115 0.885 43 H 0.097 0.903 44 H 0.117 0.883 45 H 0.098 0.902 46 H 0.136 0.864 47 H 0.088 0.912 48 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -17.278 9.660 -1.475 19.850 hybrid contribution 2.036 0.407 -0.292 2.097 sum -15.241 10.067 -1.766 18.351 Atomic orbital electron populations 1.21635 0.93353 1.01434 1.02278 1.21079 0.97364 0.96562 0.95477 1.21915 1.00424 0.95407 1.02979 1.21775 0.89573 0.98427 0.91952 0.91514 1.22463 0.97132 0.98821 0.86471 1.48284 1.42490 1.36448 1.08237 1.21227 0.77566 0.78679 0.91875 1.90640 1.57078 1.61159 1.36709 1.20241 0.98080 0.97906 0.93931 1.19540 0.94129 0.93500 1.11952 1.20720 0.98180 0.92625 0.99435 1.20712 0.93351 0.98369 1.13719 1.20953 0.96045 0.95801 1.00662 1.21301 0.99458 0.92982 1.07697 1.17716 0.91369 0.93669 0.87780 1.19571 0.96311 0.92811 1.42594 0.91524 1.26645 0.96734 1.02570 0.91707 1.69875 1.09469 1.37185 1.28466 0.85384 0.78039 0.77826 0.79641 1.17749 1.19076 1.19479 1.22796 0.96923 1.00402 0.86066 1.22441 0.90823 1.00628 0.94042 1.60712 1.62164 1.06261 1.00806 0.91269 0.92382 0.93732 0.91600 0.93425 0.91610 0.91202 0.91998 0.90689 0.88752 0.87322 0.86747 0.86631 0.87575 0.88503 0.90259 0.88316 0.90243 0.86436 0.91204 0.83136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.93 9.04 71.98 0.65 -1.28 16 2 C -0.09 -1.45 2.80 -10.79 -0.03 -1.48 16 3 C -0.15 -2.16 8.52 71.98 0.61 -1.54 16 4 C 0.09 1.93 2.38 45.00 0.11 2.03 16 5 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 6 C 0.08 2.05 5.66 86.35 0.49 2.53 16 7 N -0.62 -18.67 3.01 -817.92 -2.46 -21.13 16 8 C 0.52 20.99 7.34 87.66 0.64 21.63 16 9 O -0.58 -29.50 15.49 -3.01 -0.05 -29.54 16 10 C -0.06 -2.46 3.55 29.10 0.10 -2.36 16 11 C -0.19 -9.36 4.43 -19.40 -0.09 -9.45 16 12 C -0.09 -4.23 9.66 22.22 0.21 -4.02 16 13 C -0.24 -11.29 10.05 22.46 0.23 -11.06 16 14 C -0.12 -5.85 10.02 22.22 0.22 -5.63 16 15 C -0.19 -11.01 8.69 22.73 0.20 -10.81 16 16 C 0.10 5.44 5.57 -21.29 -0.12 5.32 16 17 C -0.48 -26.69 8.15 23.46 0.19 -26.49 16 18 H 0.07 3.62 6.66 -2.91 -0.02 3.60 16 19 C 0.04 1.98 5.15 85.26 0.44 2.42 16 20 N -0.82 -44.12 10.98 21.83 0.24 -43.88 16 21 Si 0.97 39.62 29.59 68.60 2.03 41.65 16 22 H -0.25 -9.56 7.11 99.48 0.71 -8.86 16 23 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 24 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 25 C 0.06 1.27 6.48 86.35 0.56 1.82 16 26 C 0.05 0.79 6.70 86.38 0.58 1.37 16 27 N -0.67 -10.77 5.67 -490.72 -2.78 -13.55 16 28 H 0.07 1.02 7.60 -2.39 -0.02 1.00 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.04 0.71 8.14 -2.38 -0.02 0.70 16 31 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.05 0.78 6.30 -2.38 -0.02 0.77 16 33 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.07 0.85 6.64 -2.39 -0.02 0.84 16 35 H 0.06 2.09 7.06 -2.39 -0.02 2.07 16 36 H 0.08 1.87 6.14 -2.39 -0.01 1.85 16 37 H 0.09 3.72 6.91 -2.38 -0.02 3.70 16 38 H 0.11 3.44 7.57 -2.39 -0.02 3.43 16 39 H 0.11 4.48 8.06 -2.91 -0.02 4.46 16 40 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 41 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 42 H 0.10 5.70 6.21 -2.91 -0.02 5.68 16 43 H 0.29 13.89 8.30 -92.71 -0.77 13.12 16 44 H 0.10 1.95 6.02 -2.38 -0.01 1.93 16 45 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 48 H 0.35 4.80 6.92 -89.69 -0.62 4.18 16 Total: -1.00 -70.11 371.87 2.32 -67.79 By element: Atomic # 1 Polarization: 35.30 SS G_CDS: 0.34 Total: 35.64 kcal Atomic # 6 Polarization: -41.98 SS G_CDS: 5.00 Total: -36.98 kcal Atomic # 7 Polarization: -73.56 SS G_CDS: -5.00 Total: -78.56 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: -0.05 Total: -29.54 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 2.03 Total: 41.65 kcal Total: -70.11 2.32 -67.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856488963.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.996 kcal (2) G-P(sol) polarization free energy of solvation -70.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds