Wall clock time and date at job start Tue Mar 31 2020 11:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47197 * 1 3 3 C 1.17401 * 179.97438 * 2 1 4 4 C 1.47198 * 179.97438 * 22.25621 * 3 2 1 5 5 C 1.52995 * 109.47403 * 15.10571 * 4 3 2 6 6 H 1.08994 * 109.47198 * 304.99915 * 5 4 3 7 7 C 1.53006 * 109.47416 * 184.99750 * 5 4 3 8 8 O 1.42902 * 109.47040 * 305.00122 * 7 5 4 9 9 N 1.46898 * 109.47203 * 64.99943 * 5 4 3 10 10 C 1.46899 * 111.00124 * 205.00143 * 9 5 4 11 11 C 1.50698 * 109.47070 * 179.97438 * 10 9 5 12 12 C 1.38288 * 119.92407 * 90.00087 * 11 10 9 13 13 C 1.38111 * 120.07382 * 179.69843 * 12 11 10 14 14 C 1.38906 * 119.92343 * 0.28047 * 13 12 11 15 15 N 1.39676 * 120.07171 * 179.97438 * 14 13 12 16 16 C 1.46499 * 120.00261 * 359.97438 * 15 14 13 17 17 C 1.46500 * 120.00062 * 179.97438 * 15 14 13 18 18 C 1.50702 * 109.47458 * 89.99484 * 17 15 14 19 19 H 1.08007 * 119.99580 * 0.02562 * 18 17 15 20 20 C 1.37875 * 120.00251 * 180.02562 * 18 17 15 21 21 N 1.31513 * 120.00212 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99942 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47377 * 59.99629 * 22 20 18 24 24 H 1.48500 * 109.47108 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47119 * 299.99714 * 22 20 18 26 26 C 1.38908 * 119.85606 * 359.97438 * 14 13 12 27 27 C 1.38112 * 119.92096 * 0.02562 * 26 14 13 28 28 H 1.09004 * 109.47236 * 142.63611 * 1 2 3 29 29 H 1.09003 * 109.47353 * 262.63571 * 1 2 3 30 30 H 1.08998 * 109.47306 * 22.64086 * 1 2 3 31 31 H 1.09003 * 109.47285 * 255.10117 * 4 3 2 32 32 H 1.09005 * 109.46821 * 135.10689 * 4 3 2 33 33 H 1.09004 * 109.46768 * 64.99733 * 7 5 4 34 34 H 1.08999 * 109.47133 * 185.00144 * 7 5 4 35 35 H 0.96696 * 113.99991 * 179.97438 * 8 7 5 36 36 H 1.00898 * 111.00093 * 328.95481 * 9 5 4 37 37 H 1.09001 * 109.47298 * 60.00095 * 10 9 5 38 38 H 1.09003 * 109.47252 * 299.99696 * 10 9 5 39 39 H 1.08002 * 119.96530 * 359.97438 * 12 11 10 40 40 H 1.08000 * 120.03725 * 180.29787 * 13 12 11 41 41 H 1.09003 * 109.46748 * 90.00479 * 16 15 14 42 42 H 1.09000 * 109.47356 * 210.00064 * 16 15 14 43 43 H 1.09000 * 109.47257 * 330.00749 * 16 15 14 44 44 H 1.08994 * 109.47318 * 210.00032 * 17 15 14 45 45 H 1.09001 * 109.47009 * 329.99755 * 17 15 14 46 46 H 0.96992 * 120.00096 * 180.02562 * 21 20 18 47 47 H 1.07998 * 120.04186 * 180.02562 * 26 14 13 48 48 H 1.08002 * 119.96339 * 180.02562 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0006 -0.0002 5 6 4.6280 -1.3920 -0.3762 6 1 4.1936 -2.1318 0.2961 7 6 6.1529 -1.4265 -0.2556 8 8 6.7172 -0.3798 -1.0482 9 7 4.2392 -1.6990 -1.7592 10 6 4.1604 -3.1501 -1.9741 11 6 3.7593 -3.4255 -3.4004 12 6 4.7301 -3.5667 -4.3750 13 6 4.3662 -3.8253 -5.6820 14 6 3.0231 -3.9380 -6.0180 15 7 2.6516 -4.1990 -7.3389 16 6 3.6788 -4.3538 -8.3718 17 6 1.2346 -4.3180 -7.6914 18 6 0.6964 -2.9632 -8.0733 19 1 1.3451 -2.0998 -8.0556 20 6 -0.6241 -2.8258 -8.4452 21 7 -1.4139 -3.8771 -8.4673 22 14 -1.2910 -1.1465 -8.9193 23 1 -0.5337 -0.6241 -10.0849 24 1 -2.7274 -1.2671 -9.2765 25 1 -1.1420 -0.2133 -7.7737 26 6 2.0503 -3.7904 -5.0375 27 6 2.4211 -3.5318 -3.7325 28 1 -0.3634 -0.8168 -0.6237 29 1 -0.3634 -0.1317 1.0192 30 1 -0.3634 0.9484 -0.3956 31 1 4.4815 0.2648 0.9928 32 1 4.4811 0.7287 -0.7257 33 1 6.4381 -1.2867 0.7871 34 1 6.5236 -2.3891 -0.6079 35 1 7.6829 -0.3413 -1.0190 36 1 3.3675 -1.2503 -1.9978 37 1 3.4187 -3.5776 -1.2994 38 1 5.1334 -3.6000 -1.7766 39 1 5.7742 -3.4789 -4.1131 40 1 5.1251 -3.9402 -6.4418 41 1 3.9713 -5.4017 -8.4392 42 1 3.2811 -4.0252 -9.3320 43 1 4.5485 -3.7498 -8.1129 44 1 1.1257 -5.0025 -8.5325 45 1 0.6785 -4.7020 -6.8362 46 1 -2.3428 -3.7805 -8.7293 47 1 1.0052 -3.8778 -5.2953 48 1 1.6653 -3.4174 -2.9695 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883157708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:44 Heat of formation + Delta-G solvation = 24.905793 kcal Electronic energy + Delta-G solvation = -25659.410237 eV Core-core repulsion = 22101.289175 eV Total energy + Delta-G solvation = -3558.121062 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.10714 -38.20780 -36.13239 -35.38908 -34.01458 -32.72652 -31.71172 -30.39837 -29.37767 -28.17826 -27.75066 -25.95006 -25.47997 -23.88278 -22.13150 -21.43960 -20.71803 -19.54836 -17.75664 -16.84062 -16.57648 -16.43244 -15.92972 -15.27220 -15.08522 -14.73466 -14.36583 -14.24118 -13.85916 -13.80198 -13.75817 -13.64457 -13.35318 -13.19311 -12.94827 -12.82979 -12.63886 -12.44566 -12.11252 -11.72624 -11.60623 -11.40740 -11.31599 -11.21986 -10.93571 -10.65614 -10.61197 -10.25406 -10.16744 -9.87309 -9.80602 -9.72134 -9.71007 -8.81749 -8.49112 -8.31212 -8.20852 -6.43819 -5.99874 -4.16101 2.15581 2.26588 2.60805 2.66546 3.29385 3.33279 3.37403 4.08070 4.12101 4.17810 4.25358 4.42877 4.66977 4.86961 4.97264 5.19287 5.22713 5.23411 5.30161 5.40511 5.41848 5.44971 5.52908 5.57303 5.60988 5.65923 5.68459 5.81929 5.84716 5.87824 5.95564 6.04819 6.10852 6.31609 6.43135 6.47142 6.68908 6.95496 7.04246 7.13995 7.24227 7.28627 7.35986 7.47906 7.56912 7.61322 7.64545 7.82482 8.17223 8.29515 8.51849 8.93033 9.50709 10.96866 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.010892 B = 0.003309 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2569.989172 B = 8459.883494 C =10169.123775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 C -0.187 4.187 3 C -0.197 4.197 4 C -0.003 4.003 5 C 0.091 3.909 6 H 0.056 0.944 7 C 0.090 3.910 8 O -0.555 6.555 9 N -0.670 5.670 10 C 0.115 3.885 11 C -0.172 4.172 12 C -0.049 4.049 13 C -0.223 4.223 14 C 0.242 3.758 15 N -0.616 5.616 16 C 0.098 3.902 17 C 0.250 3.750 18 C -0.532 4.532 19 H 0.059 0.941 20 C 0.062 3.938 21 N -0.896 5.896 22 Si 0.896 3.104 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.275 1.275 26 C -0.188 4.188 27 C -0.067 4.067 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.043 0.957 34 H 0.047 0.953 35 H 0.372 0.628 36 H 0.347 0.653 37 H 0.027 0.973 38 H 0.068 0.932 39 H 0.108 0.892 40 H 0.113 0.887 41 H 0.035 0.965 42 H 0.066 0.934 43 H 0.055 0.945 44 H 0.030 0.970 45 H 0.035 0.965 46 H 0.264 0.736 47 H 0.131 0.869 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.448 3.018 17.377 21.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.187 4.187 3 C -0.197 4.197 4 C -0.039 4.039 5 C -0.019 4.019 6 H 0.074 0.926 7 C 0.011 3.989 8 O -0.359 6.359 9 N -0.303 5.303 10 C -0.013 4.013 11 C -0.175 4.175 12 C -0.069 4.069 13 C -0.246 4.246 14 C 0.135 3.865 15 N -0.322 5.322 16 C -0.046 4.046 17 C 0.130 3.870 18 C -0.570 4.570 19 H 0.077 0.923 20 C -0.140 4.140 21 N -0.535 5.535 22 Si 0.724 3.276 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.201 1.201 26 C -0.210 4.210 27 C -0.086 4.086 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.121 0.879 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.217 0.783 36 H 0.167 0.833 37 H 0.045 0.955 38 H 0.087 0.913 39 H 0.126 0.874 40 H 0.131 0.869 41 H 0.053 0.947 42 H 0.085 0.915 43 H 0.073 0.927 44 H 0.048 0.952 45 H 0.053 0.947 46 H 0.074 0.926 47 H 0.148 0.852 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 12.170 3.064 16.720 20.906 hybrid contribution -0.778 0.600 0.201 1.003 sum 11.392 3.664 16.921 20.725 Atomic orbital electron populations 1.18879 0.84708 1.03421 1.02815 1.22456 0.93951 1.00763 1.01551 1.22384 0.93700 1.02039 1.01544 1.18759 0.83928 0.98282 1.02964 1.21567 0.93883 0.95592 0.90835 0.92642 1.22166 0.93106 0.90636 0.93019 1.86597 1.24463 1.53425 1.71424 1.60593 1.39009 1.09936 1.20737 1.20714 0.99539 0.87674 0.93399 1.19145 0.93248 1.10572 0.94504 1.20471 0.97908 0.96531 0.91945 1.20570 0.94196 1.12977 0.96847 1.17946 0.92551 0.90918 0.85108 1.47090 1.07781 1.73599 1.03705 1.21469 0.91597 0.99219 0.92279 1.19268 0.74619 0.96805 0.96329 1.21561 0.95356 0.94553 1.45572 0.92287 1.24955 0.96736 0.96946 0.95390 1.69919 1.06383 1.29107 1.48085 0.86585 0.77736 0.84218 0.79105 1.20217 1.21188 1.20078 1.20830 0.99721 1.08375 0.92088 1.20643 0.94741 0.97720 0.95529 0.89855 0.90448 0.90136 0.89525 0.87890 0.93917 0.93458 0.78261 0.83347 0.95524 0.91329 0.87357 0.86918 0.94657 0.91486 0.92654 0.95237 0.94679 0.92612 0.85163 0.87625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.39 10.32 34.37 0.35 -0.04 16 2 C -0.19 -2.32 14.13 -37.12 -0.52 -2.84 16 3 C -0.20 -2.45 12.20 -37.12 -0.45 -2.91 16 4 C 0.00 -0.03 5.03 -29.52 -0.15 -0.18 16 5 C 0.09 0.97 2.41 -67.71 -0.16 0.80 16 6 H 0.06 0.56 7.80 -51.93 -0.40 0.16 16 7 C 0.09 0.78 6.80 37.16 0.25 1.03 16 8 O -0.56 -5.42 12.83 -35.23 -0.45 -5.88 16 9 N -0.67 -8.88 6.25 -107.99 -0.67 -9.56 16 10 C 0.11 1.53 5.60 -4.98 -0.03 1.50 16 11 C -0.17 -2.79 5.39 -104.59 -0.56 -3.35 16 12 C -0.05 -0.81 9.69 -39.61 -0.38 -1.20 16 13 C -0.22 -4.04 9.21 -39.38 -0.36 -4.40 16 14 C 0.24 5.04 6.55 -83.79 -0.55 4.49 16 15 N -0.62 -13.49 2.99 -181.00 -0.54 -14.03 16 16 C 0.10 1.77 10.19 59.85 0.61 2.38 16 17 C 0.25 6.35 4.91 -5.19 -0.03 6.32 16 18 C -0.53 -14.71 9.39 -34.44 -0.32 -15.04 16 19 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 20 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 21 N -0.90 -25.85 13.29 55.43 0.74 -25.11 16 22 Si 0.90 21.55 29.54 -169.99 -5.02 16.52 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 C -0.19 -3.90 9.21 -39.38 -0.36 -4.27 16 27 C -0.07 -1.19 9.69 -39.61 -0.38 -1.58 16 28 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.10 1.21 7.73 -51.93 -0.40 0.81 16 33 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.05 0.41 7.35 -51.93 -0.38 0.03 16 35 H 0.37 1.99 9.12 45.56 0.42 2.40 16 36 H 0.35 5.12 7.36 -39.29 -0.29 4.83 16 37 H 0.03 0.34 8.00 -51.93 -0.42 -0.07 16 38 H 0.07 0.83 7.30 -51.93 -0.38 0.45 16 39 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 40 H 0.11 1.85 6.14 -52.49 -0.32 1.52 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 43 H 0.05 0.89 6.20 -51.93 -0.32 0.57 16 44 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 45 H 0.04 0.94 6.20 -51.93 -0.32 0.62 16 46 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 47 H 0.13 2.97 6.14 -52.49 -0.32 2.65 16 48 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 LS Contribution 398.98 15.07 6.01 6.01 Total: -1.00 -31.67 398.98 -10.00 -41.67 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -6.91 Total: 8.00 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: -3.15 Total: -17.63 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: -0.48 Total: -48.70 kcal Atomic # 8 Polarization: -5.42 SS G_CDS: -0.45 Total: -5.88 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.67 -10.00 -41.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883157708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.574 kcal (2) G-P(sol) polarization free energy of solvation -31.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds