Wall clock time and date at job start Tue Mar 31 2020 11:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47197 * 1 3 3 C 1.17401 * 179.97438 * 2 1 4 4 C 1.47198 * 179.97438 * 22.25621 * 3 2 1 5 5 C 1.52995 * 109.47403 * 15.10571 * 4 3 2 6 6 H 1.08994 * 109.47198 * 304.99915 * 5 4 3 7 7 C 1.53006 * 109.47416 * 184.99750 * 5 4 3 8 8 O 1.42902 * 109.47040 * 305.00122 * 7 5 4 9 9 N 1.46898 * 109.47203 * 64.99943 * 5 4 3 10 10 C 1.46899 * 111.00124 * 205.00143 * 9 5 4 11 11 C 1.50698 * 109.47070 * 179.97438 * 10 9 5 12 12 C 1.38288 * 119.92407 * 90.00087 * 11 10 9 13 13 C 1.38111 * 120.07382 * 179.69843 * 12 11 10 14 14 C 1.38906 * 119.92343 * 0.28047 * 13 12 11 15 15 N 1.39676 * 120.07171 * 179.97438 * 14 13 12 16 16 C 1.46499 * 120.00261 * 359.97438 * 15 14 13 17 17 C 1.46500 * 120.00062 * 179.97438 * 15 14 13 18 18 C 1.50702 * 109.47458 * 89.99484 * 17 15 14 19 19 H 1.08007 * 119.99580 * 0.02562 * 18 17 15 20 20 C 1.37875 * 120.00251 * 180.02562 * 18 17 15 21 21 N 1.31513 * 120.00212 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99942 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47377 * 59.99629 * 22 20 18 24 24 H 1.48500 * 109.47108 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47119 * 299.99714 * 22 20 18 26 26 C 1.38908 * 119.85606 * 359.97438 * 14 13 12 27 27 C 1.38112 * 119.92096 * 0.02562 * 26 14 13 28 28 H 1.09004 * 109.47236 * 142.63611 * 1 2 3 29 29 H 1.09003 * 109.47353 * 262.63571 * 1 2 3 30 30 H 1.08998 * 109.47306 * 22.64086 * 1 2 3 31 31 H 1.09003 * 109.47285 * 255.10117 * 4 3 2 32 32 H 1.09005 * 109.46821 * 135.10689 * 4 3 2 33 33 H 1.09004 * 109.46768 * 64.99733 * 7 5 4 34 34 H 1.08999 * 109.47133 * 185.00144 * 7 5 4 35 35 H 0.96696 * 113.99991 * 179.97438 * 8 7 5 36 36 H 1.00898 * 111.00093 * 328.95481 * 9 5 4 37 37 H 1.09001 * 109.47298 * 60.00095 * 10 9 5 38 38 H 1.09003 * 109.47252 * 299.99696 * 10 9 5 39 39 H 1.08002 * 119.96530 * 359.97438 * 12 11 10 40 40 H 1.08000 * 120.03725 * 180.29787 * 13 12 11 41 41 H 1.09003 * 109.46748 * 90.00479 * 16 15 14 42 42 H 1.09000 * 109.47356 * 210.00064 * 16 15 14 43 43 H 1.09000 * 109.47257 * 330.00749 * 16 15 14 44 44 H 1.08994 * 109.47318 * 210.00032 * 17 15 14 45 45 H 1.09001 * 109.47009 * 329.99755 * 17 15 14 46 46 H 0.96992 * 120.00096 * 180.02562 * 21 20 18 47 47 H 1.07998 * 120.04186 * 180.02562 * 26 14 13 48 48 H 1.08002 * 119.96339 * 180.02562 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0006 -0.0002 5 6 4.6280 -1.3920 -0.3762 6 1 4.1936 -2.1318 0.2961 7 6 6.1529 -1.4265 -0.2556 8 8 6.7172 -0.3798 -1.0482 9 7 4.2392 -1.6990 -1.7592 10 6 4.1604 -3.1501 -1.9741 11 6 3.7593 -3.4255 -3.4004 12 6 4.7301 -3.5667 -4.3750 13 6 4.3662 -3.8253 -5.6820 14 6 3.0231 -3.9380 -6.0180 15 7 2.6516 -4.1990 -7.3389 16 6 3.6788 -4.3538 -8.3718 17 6 1.2346 -4.3180 -7.6914 18 6 0.6964 -2.9632 -8.0733 19 1 1.3451 -2.0998 -8.0556 20 6 -0.6241 -2.8258 -8.4452 21 7 -1.4139 -3.8771 -8.4673 22 14 -1.2910 -1.1465 -8.9193 23 1 -0.5337 -0.6241 -10.0849 24 1 -2.7274 -1.2671 -9.2765 25 1 -1.1420 -0.2133 -7.7737 26 6 2.0503 -3.7904 -5.0375 27 6 2.4211 -3.5318 -3.7325 28 1 -0.3634 -0.8168 -0.6237 29 1 -0.3634 -0.1317 1.0192 30 1 -0.3634 0.9484 -0.3956 31 1 4.4815 0.2648 0.9928 32 1 4.4811 0.7287 -0.7257 33 1 6.4381 -1.2867 0.7871 34 1 6.5236 -2.3891 -0.6079 35 1 7.6829 -0.3413 -1.0190 36 1 3.3675 -1.2503 -1.9978 37 1 3.4187 -3.5776 -1.2994 38 1 5.1334 -3.6000 -1.7766 39 1 5.7742 -3.4789 -4.1131 40 1 5.1251 -3.9402 -6.4418 41 1 3.9713 -5.4017 -8.4392 42 1 3.2811 -4.0252 -9.3320 43 1 4.5485 -3.7498 -8.1129 44 1 1.1257 -5.0025 -8.5325 45 1 0.6785 -4.7020 -6.8362 46 1 -2.3428 -3.7805 -8.7293 47 1 1.0052 -3.8778 -5.2953 48 1 1.6653 -3.4174 -2.9695 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883157708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:44 Heat of formation + Delta-G solvation = 4.795227 kcal Electronic energy + Delta-G solvation = -25660.282297 eV Core-core repulsion = 22101.289175 eV Total energy + Delta-G solvation = -3558.993121 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.50349 -39.13167 -37.45718 -36.34571 -35.10728 -34.64268 -32.76936 -31.89679 -30.55816 -29.63016 -29.04196 -27.03367 -26.63575 -25.51268 -23.65533 -22.97012 -21.50667 -21.04247 -18.64302 -18.48096 -18.13687 -17.54059 -17.06568 -16.64354 -16.30266 -16.14900 -15.74653 -15.33547 -15.23878 -14.94059 -14.73775 -14.56286 -14.43759 -14.32119 -14.19412 -14.06707 -13.91898 -13.62075 -13.48639 -13.17870 -13.09099 -12.95204 -12.69153 -12.57594 -12.52341 -12.26771 -12.11742 -11.80264 -11.74098 -11.41888 -10.83970 -10.66327 -10.64436 -10.55059 -10.39405 -9.67760 -9.28054 -8.36990 -7.80926 -6.38423 0.69767 0.83198 1.36126 1.37993 1.46408 1.69588 1.75327 2.33504 2.62834 2.99296 3.05180 3.31611 3.45013 3.56708 4.02636 4.06199 4.14071 4.22883 4.31284 4.39737 4.46132 4.51070 4.61921 4.63772 4.67909 4.71234 4.74622 4.76927 4.82142 4.84962 4.86668 4.89952 4.94624 5.00546 5.07189 5.12086 5.14431 5.19459 5.32168 5.58058 5.65848 5.69087 5.91267 6.06457 6.14589 6.23387 6.37770 6.49327 6.69923 6.81810 6.92930 7.13255 7.33424 8.82289 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.010892 B = 0.003309 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2569.989172 B = 8459.883494 C =10169.123775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 C -0.208 4.208 3 C -0.216 4.216 4 C 0.002 3.998 5 C 0.090 3.910 6 H 0.062 0.938 7 C 0.092 3.908 8 O -0.579 6.579 9 N -0.679 5.679 10 C 0.120 3.880 11 C -0.159 4.159 12 C -0.046 4.046 13 C -0.218 4.218 14 C 0.214 3.786 15 N -0.632 5.632 16 C 0.098 3.902 17 C 0.267 3.733 18 C -0.544 4.544 19 H 0.048 0.952 20 C 0.014 3.986 21 N -0.926 5.926 22 Si 0.960 3.040 23 H -0.268 1.268 24 H -0.277 1.277 25 H -0.275 1.275 26 C -0.216 4.216 27 C -0.070 4.070 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.109 0.891 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.051 0.949 35 H 0.390 0.610 36 H 0.334 0.666 37 H 0.032 0.968 38 H 0.089 0.911 39 H 0.140 0.860 40 H 0.134 0.866 41 H 0.053 0.947 42 H 0.056 0.944 43 H 0.078 0.922 44 H 0.010 0.990 45 H 0.010 0.990 46 H 0.268 0.732 47 H 0.095 0.905 48 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.653 3.991 19.019 24.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.209 4.209 3 C -0.216 4.216 4 C -0.035 4.035 5 C -0.020 4.020 6 H 0.080 0.920 7 C 0.013 3.987 8 O -0.386 6.386 9 N -0.311 5.311 10 C -0.008 4.008 11 C -0.162 4.162 12 C -0.065 4.065 13 C -0.240 4.240 14 C 0.109 3.891 15 N -0.340 5.340 16 C -0.045 4.045 17 C 0.146 3.854 18 C -0.582 4.582 19 H 0.066 0.934 20 C -0.185 4.185 21 N -0.566 5.566 22 Si 0.785 3.215 23 H -0.193 1.193 24 H -0.202 1.202 25 H -0.200 1.200 26 C -0.238 4.238 27 C -0.089 4.089 28 H 0.100 0.900 29 H 0.115 0.885 30 H 0.107 0.893 31 H 0.127 0.873 32 H 0.108 0.892 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.238 0.762 36 H 0.152 0.848 37 H 0.050 0.950 38 H 0.108 0.892 39 H 0.158 0.842 40 H 0.151 0.849 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.096 0.904 44 H 0.028 0.972 45 H 0.028 0.972 46 H 0.077 0.923 47 H 0.113 0.887 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 14.431 4.034 18.387 23.720 hybrid contribution -1.395 0.300 -0.178 1.437 sum 13.037 4.334 18.209 22.811 Atomic orbital electron populations 1.19038 0.83188 1.03808 1.04105 1.23257 0.95169 1.00789 1.01643 1.22984 0.94640 1.02219 1.01743 1.18804 0.82824 0.98080 1.03789 1.21701 0.95461 0.95527 0.89306 0.91973 1.22182 0.91412 0.90593 0.94486 1.86546 1.26349 1.53812 1.71880 1.60635 1.38208 1.09419 1.22829 1.20705 1.00718 0.88174 0.91205 1.19512 0.92297 1.08070 0.96336 1.20857 0.99518 0.95034 0.91117 1.20823 0.93123 1.11855 0.98225 1.18207 0.93858 0.92544 0.84530 1.46966 1.06766 1.75152 1.05102 1.21605 0.91207 1.00822 0.90866 1.18757 0.77076 0.95269 0.94317 1.21758 0.95713 0.95049 1.45728 0.93408 1.25763 0.96941 1.00623 0.95205 1.70023 1.06731 1.31099 1.48713 0.85579 0.77475 0.79630 0.78841 1.19342 1.20163 1.19987 1.20730 0.98268 1.10940 0.93898 1.20792 0.96244 0.97341 0.94515 0.89964 0.88504 0.89309 0.87265 0.89250 0.91204 0.93077 0.76153 0.84788 0.95019 0.89237 0.84179 0.84869 0.92814 0.92525 0.90393 0.97214 0.97175 0.92333 0.88701 0.86521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.81 10.32 70.18 0.72 -0.09 16 2 C -0.21 -5.05 14.13 31.12 0.44 -4.61 16 3 C -0.22 -5.20 12.20 31.12 0.38 -4.82 16 4 C 0.00 0.03 5.03 28.79 0.14 0.18 16 5 C 0.09 1.67 2.41 44.92 0.11 1.77 16 6 H 0.06 1.09 7.80 -2.39 -0.02 1.07 16 7 C 0.09 1.28 6.80 71.98 0.49 1.77 16 8 O -0.58 -9.65 12.83 -148.98 -1.91 -11.56 16 9 N -0.68 -16.58 6.25 -495.59 -3.10 -19.68 16 10 C 0.12 2.87 5.60 85.56 0.48 3.35 16 11 C -0.16 -4.88 5.39 -19.84 -0.11 -4.99 16 12 C -0.05 -1.40 9.69 22.25 0.22 -1.18 16 13 C -0.22 -7.52 9.21 22.40 0.21 -7.31 16 14 C 0.21 9.04 6.55 38.21 0.25 9.29 16 15 N -0.63 -28.50 2.99 -726.57 -2.17 -30.68 16 16 C 0.10 3.50 10.19 127.77 1.30 4.80 16 17 C 0.27 14.38 4.91 85.63 0.42 14.80 16 18 C -0.54 -31.27 9.39 25.60 0.24 -31.03 16 19 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 20 C 0.01 0.80 5.46 84.65 0.46 1.26 16 21 N -0.93 -55.02 13.29 21.45 0.28 -54.74 16 22 Si 0.96 44.84 29.54 68.60 2.03 46.86 16 23 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 24 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 25 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 26 C -0.22 -9.38 9.21 22.40 0.21 -9.18 16 27 C -0.07 -2.50 9.69 22.25 0.22 -2.28 16 28 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.09 2.00 7.73 -2.38 -0.02 1.98 16 33 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 34 H 0.05 0.68 7.35 -2.39 -0.02 0.66 16 35 H 0.39 3.02 9.12 -74.06 -0.68 2.34 16 36 H 0.33 9.53 7.36 -89.70 -0.66 8.87 16 37 H 0.03 0.74 8.00 -2.39 -0.02 0.72 16 38 H 0.09 1.80 7.30 -2.39 -0.02 1.79 16 39 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 40 H 0.13 3.99 6.14 -2.91 -0.02 3.97 16 41 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.06 2.10 8.07 -2.39 -0.02 2.08 16 43 H 0.08 2.39 6.20 -2.39 -0.01 2.37 16 44 H 0.01 0.56 8.07 -2.39 -0.02 0.54 16 45 H 0.01 0.60 6.20 -2.39 -0.01 0.58 16 46 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 47 H 0.09 4.73 6.14 -2.91 -0.02 4.71 16 48 H 0.12 3.80 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -70.37 398.98 0.94 -69.43 By element: Atomic # 1 Polarization: 28.99 SS G_CDS: -0.37 Total: 28.62 kcal Atomic # 6 Polarization: -34.44 SS G_CDS: 6.18 Total: -28.26 kcal Atomic # 7 Polarization: -100.11 SS G_CDS: -4.98 Total: -105.09 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: -1.91 Total: -11.56 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -70.37 0.94 -69.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883157708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.224 kcal (2) G-P(sol) polarization free energy of solvation -70.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds