Wall clock time and date at job start Tue Mar 31 2020 10:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46734 * 2 1 4 4 C 1.50704 * 109.47355 * 179.97438 * 3 2 1 5 5 C 1.38355 * 119.85423 * 269.73120 * 4 3 2 6 6 C 1.37960 * 120.14401 * 179.71737 * 5 4 3 7 7 C 1.39574 * 119.85003 * 0.54667 * 6 5 4 8 8 C 1.47854 * 120.14176 * 179.70165 * 7 6 5 9 9 O 1.21549 * 119.99564 * 183.92638 * 8 7 6 10 10 N 1.34778 * 119.99904 * 3.92522 * 8 7 6 11 11 C 1.47426 * 125.64484 * 182.96069 * 10 8 7 12 12 C 1.55135 * 104.71764 * 155.82089 * 11 10 8 13 13 H 1.09001 * 110.89912 * 155.27673 * 12 11 10 14 14 N 1.46497 * 111.22330 * 279.17498 * 12 11 10 15 15 C 1.36935 * 120.00157 * 267.20429 * 14 12 11 16 16 H 1.08001 * 119.99910 * 0.02562 * 15 14 12 17 17 C 1.38808 * 120.00206 * 180.02562 * 15 14 12 18 18 N 1.31620 * 119.99988 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00287 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47017 * 59.99775 * 19 17 15 21 21 H 1.48499 * 109.47171 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46977 * 299.99921 * 19 17 15 23 23 C 1.55158 * 101.48767 * 37.29635 * 12 11 10 24 24 C 1.47023 * 125.64660 * 3.27533 * 10 8 7 25 25 H 1.08999 * 109.88269 * 300.43031 * 24 10 8 26 26 C 1.52998 * 109.88455 * 61.45104 * 24 10 8 27 27 C 1.39574 * 119.71494 * 359.72627 * 7 6 5 28 28 C 1.37956 * 119.85101 * 0.02562 * 27 7 6 29 29 H 1.08996 * 109.47028 * 60.00034 * 1 2 3 30 30 H 1.08993 * 109.47144 * 300.00266 * 1 2 3 31 31 H 1.09000 * 109.46631 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47149 * 119.99530 * 2 1 3 33 33 H 1.08997 * 109.47372 * 240.00185 * 2 1 3 34 34 H 1.08996 * 109.47335 * 299.99778 * 3 2 1 35 35 H 1.09000 * 109.47696 * 60.00303 * 3 2 1 36 36 H 1.08004 * 119.93155 * 359.97438 * 5 4 3 37 37 H 1.07996 * 120.07385 * 180.24631 * 6 5 4 38 38 H 1.08999 * 110.36797 * 274.74879 * 11 10 8 39 39 H 1.08996 * 110.36751 * 37.07432 * 11 10 8 40 40 H 0.97001 * 120.00040 * 87.21178 * 14 12 11 41 41 H 0.97004 * 119.99855 * 180.02562 * 18 17 15 42 42 H 1.08999 * 110.71882 * 205.96659 * 23 12 11 43 43 H 1.09002 * 110.72103 * 82.69051 * 23 12 11 44 44 H 1.08991 * 109.47563 * 76.39761 * 26 24 10 45 45 H 1.09004 * 109.46824 * 196.39699 * 26 24 10 46 46 H 1.09000 * 109.46903 * 316.39144 * 26 24 10 47 47 H 1.08001 * 120.07270 * 179.97438 * 27 7 6 48 48 H 1.07998 * 119.92901 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4427 0.0006 5 6 4.2352 1.4486 1.2009 6 6 5.6148 1.4429 1.2085 7 6 6.3162 1.4427 0.0017 8 6 7.7947 1.4433 0.0023 9 8 8.4028 1.5152 -1.0476 10 7 8.4681 1.3641 1.1671 11 6 9.9337 1.4164 1.3175 12 6 10.1636 1.9078 2.7709 13 1 11.1364 1.5845 3.1414 14 7 10.0254 3.3631 2.8668 15 6 11.1284 4.1652 2.7433 16 1 12.1001 3.7249 2.5748 17 6 10.9976 5.5441 2.8347 18 7 9.8134 6.0806 3.0406 19 14 12.5021 6.6383 2.6656 20 1 13.1226 6.4243 1.3335 21 1 12.0972 8.0607 2.7998 22 1 13.4824 6.2998 3.7284 23 6 9.0141 1.1890 3.5255 24 6 7.8630 1.2046 2.4976 25 1 7.1939 2.0401 2.7030 26 6 7.0862 -0.1119 2.5615 27 6 5.6158 1.4425 -1.2056 28 6 4.2362 1.4430 -1.1991 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 3.6913 1.4535 2.1339 37 1 6.1508 1.4435 2.1460 38 1 10.3652 0.4254 1.1769 39 1 10.3630 2.1223 0.6065 40 1 9.1526 3.7585 3.0179 41 1 9.7220 7.0442 3.1041 42 1 8.7371 1.7419 4.4231 43 1 9.2960 0.1657 3.7732 44 1 7.7852 -0.9417 2.6655 45 1 6.4125 -0.0950 3.4183 46 1 6.5072 -0.2370 1.6465 47 1 6.1526 1.4428 -2.1427 48 1 3.6930 1.4433 -2.1325 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989384607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:56 Heat of formation + Delta-G solvation = 27.025348 kcal Electronic energy + Delta-G solvation = -26761.363830 eV Core-core repulsion = 23203.334679 eV Total energy + Delta-G solvation = -3558.029151 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.189 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.70670 -38.79490 -37.36868 -35.38094 -34.29285 -32.27619 -31.34342 -31.04987 -30.45245 -28.53142 -26.93716 -25.59538 -23.85747 -23.15523 -22.57495 -21.99178 -20.87895 -20.09352 -19.24843 -17.35886 -17.13772 -16.20914 -15.90699 -15.45956 -15.16934 -14.70807 -14.42390 -14.36665 -14.07074 -13.82802 -13.61379 -13.47020 -13.26880 -12.92956 -12.86173 -12.69422 -12.37558 -12.28718 -12.05793 -11.79393 -11.68089 -11.40377 -11.28418 -11.11063 -10.98095 -10.95142 -10.84087 -10.72213 -10.54771 -10.25538 -10.05229 -9.71943 -9.54434 -9.02504 -8.87388 -8.65046 -8.20526 -7.03264 -5.81487 -3.11487 0.94263 1.41528 3.08934 3.34500 3.42899 3.47913 3.48355 3.95786 4.49401 4.55038 4.61601 4.71754 4.74426 4.82035 4.90354 4.99171 5.02387 5.16397 5.20234 5.24582 5.39565 5.42272 5.48222 5.51730 5.55378 5.58170 5.61391 5.70095 5.72225 5.79488 5.88635 5.91173 5.93501 6.01629 6.02541 6.07767 6.22435 6.28071 6.33476 6.39046 6.41391 6.54025 6.58083 6.70732 6.84549 6.94260 7.65969 7.92946 8.35997 8.54276 9.47846 10.01928 10.36448 11.40587 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.017745 B = 0.003076 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.566683 B = 9101.261492 C = 9401.307603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.083 4.083 4 C -0.062 4.062 5 C -0.134 4.134 6 C -0.115 4.115 7 C -0.133 4.133 8 C 0.570 3.430 9 O -0.547 6.547 10 N -0.592 5.592 11 C 0.078 3.922 12 C 0.168 3.832 13 H 0.076 0.924 14 N -0.710 5.710 15 C -0.247 4.247 16 H 0.072 0.928 17 C -0.009 4.009 18 N -0.930 5.930 19 Si 0.908 3.092 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.285 1.285 23 C -0.139 4.139 24 C 0.117 3.883 25 H 0.088 0.912 26 C -0.180 4.180 27 C -0.058 4.058 28 C -0.134 4.134 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.124 0.876 37 H 0.172 0.828 38 H 0.054 0.946 39 H 0.082 0.918 40 H 0.385 0.615 41 H 0.257 0.743 42 H 0.086 0.914 43 H 0.076 0.924 44 H 0.062 0.938 45 H 0.070 0.930 46 H 0.072 0.928 47 H 0.132 0.868 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.327 -14.639 -1.676 21.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.121 4.121 4 C -0.062 4.062 5 C -0.152 4.152 6 C -0.133 4.133 7 C -0.136 4.136 8 C 0.360 3.640 9 O -0.426 6.426 10 N -0.324 5.324 11 C -0.048 4.048 12 C 0.055 3.945 13 H 0.094 0.906 14 N -0.350 5.350 15 C -0.378 4.378 16 H 0.090 0.910 17 C -0.205 4.205 18 N -0.577 5.577 19 Si 0.739 3.261 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.212 1.212 23 C -0.178 4.178 24 C 0.014 3.986 25 H 0.106 0.894 26 C -0.238 4.238 27 C -0.077 4.077 28 C -0.152 4.152 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.142 0.858 37 H 0.188 0.812 38 H 0.072 0.928 39 H 0.100 0.900 40 H 0.219 0.781 41 H 0.066 0.934 42 H 0.105 0.895 43 H 0.095 0.905 44 H 0.081 0.919 45 H 0.088 0.912 46 H 0.091 0.909 47 H 0.150 0.850 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -15.857 -14.472 -2.299 21.590 hybrid contribution 0.431 0.882 -0.179 0.998 sum -15.426 -13.589 -2.478 20.706 Atomic orbital electron populations 1.21791 0.95699 1.01666 1.01874 1.21507 0.95609 0.96014 1.02491 1.20691 0.90858 0.97444 1.03081 1.20088 0.95634 0.97182 0.93335 1.20992 0.93955 1.02706 0.97554 1.23144 0.95081 0.94828 1.00206 1.19952 0.93008 1.06300 0.94369 1.17894 0.86744 0.76717 0.82659 1.90735 1.69920 1.51241 1.30686 1.48265 1.08291 1.70649 1.05155 1.23387 0.78968 0.99980 1.02421 1.21402 0.96303 0.86115 0.90631 0.90625 1.42290 1.08584 0.98620 1.85460 1.19198 0.88102 0.88165 1.42311 0.90978 1.24759 0.96734 0.96755 1.02294 1.69650 1.21513 1.10801 1.55784 0.86254 0.82077 0.79796 0.77965 1.21164 1.21690 1.21158 1.23136 0.95472 1.01317 0.97844 1.21976 0.95881 0.97033 0.83723 0.89439 1.22790 1.00778 0.97294 1.02925 1.21245 0.93780 0.94958 0.97744 1.20932 0.93729 1.02933 0.97634 0.92712 0.92657 0.92712 0.91760 0.91832 0.90930 0.90823 0.85767 0.81198 0.92762 0.89989 0.78134 0.93366 0.89548 0.90496 0.91947 0.91154 0.90896 0.84983 0.85824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.91 37.16 0.37 -0.56 16 2 C -0.12 -0.86 5.92 -26.73 -0.16 -1.02 16 3 C -0.08 -0.68 5.34 -27.88 -0.15 -0.83 16 4 C -0.06 -0.68 5.14 -104.53 -0.54 -1.21 16 5 C -0.13 -1.53 9.68 -39.64 -0.38 -1.91 16 6 C -0.12 -1.55 6.47 -39.18 -0.25 -1.80 16 7 C -0.13 -2.13 5.32 -104.97 -0.56 -2.69 16 8 C 0.57 10.99 7.57 -12.32 -0.09 10.89 16 9 O -0.55 -12.36 16.63 5.32 0.09 -12.27 16 10 N -0.59 -10.52 3.06 -167.59 -0.51 -11.04 16 11 C 0.08 1.46 6.61 -2.41 -0.02 1.45 16 12 C 0.17 3.13 3.72 -65.66 -0.24 2.88 16 13 H 0.08 1.36 8.09 -51.93 -0.42 0.94 16 14 N -0.71 -17.11 5.25 -51.24 -0.27 -17.38 16 15 C -0.25 -6.70 9.96 -15.06 -0.15 -6.85 16 16 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 17 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 18 N -0.93 -27.86 13.06 55.49 0.72 -27.13 16 19 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 C -0.14 -1.99 6.07 -24.89 -0.15 -2.14 16 24 C 0.12 1.68 2.70 -66.95 -0.18 1.49 16 25 H 0.09 1.30 6.11 -51.93 -0.32 0.98 16 26 C -0.18 -2.00 7.79 37.16 0.29 -1.71 16 27 C -0.06 -0.85 9.60 -39.19 -0.38 -1.22 16 28 C -0.13 -1.59 9.68 -39.64 -0.38 -1.97 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 35 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 36 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 37 H 0.17 2.15 2.03 -57.38 -0.12 2.03 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.08 1.84 8.07 -51.93 -0.42 1.42 16 40 H 0.38 9.92 7.86 -40.82 -0.32 9.60 16 41 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 43 H 0.08 0.90 7.58 -51.93 -0.39 0.51 16 44 H 0.06 0.66 7.71 -51.93 -0.40 0.26 16 45 H 0.07 0.62 8.11 -51.93 -0.42 0.19 16 46 H 0.07 0.88 4.77 -51.93 -0.25 0.63 16 47 H 0.13 1.94 7.66 -52.49 -0.40 1.54 16 48 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 379.25 15.07 5.72 5.72 Total: -1.00 -32.64 379.25 -10.00 -42.64 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -7.65 Total: 9.65 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: -3.07 Total: -7.55 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: -0.06 Total: -55.55 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: 0.09 Total: -12.27 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.64 -10.00 -42.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989384607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.667 kcal (2) G-P(sol) polarization free energy of solvation -32.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds