Wall clock time and date at job start Tue Mar 31 2020 12:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46738 * 2 1 4 4 H 1.08993 * 109.47444 * 55.00137 * 3 2 1 5 5 N 1.46499 * 109.47044 * 294.99356 * 3 2 1 6 6 C 1.34781 * 119.99762 * 85.00392 * 5 3 2 7 7 O 1.21594 * 119.99964 * 355.69902 * 6 5 3 8 8 N 1.34772 * 120.00214 * 175.69486 * 6 5 3 9 9 C 1.46924 * 120.62749 * 5.24807 * 8 6 5 10 10 C 1.53191 * 108.77606 * 126.36887 * 9 8 6 11 11 C 1.53038 * 109.31518 * 54.63069 * 10 9 8 12 12 C 1.53037 * 109.53671 * 298.63555 * 11 10 9 13 13 H 1.09004 * 109.50157 * 301.41400 * 12 11 10 14 14 C 1.50706 * 109.49897 * 181.32013 * 12 11 10 15 15 H 1.08005 * 119.99581 * 359.97438 * 14 12 11 16 16 C 1.37874 * 120.00116 * 180.02562 * 14 12 11 17 17 N 1.31517 * 119.99438 * 179.97438 * 16 14 12 18 18 Si 1.86798 * 120.00185 * 359.97438 * 16 14 12 19 19 H 1.48501 * 109.47079 * 89.99729 * 18 16 14 20 20 H 1.48493 * 109.46945 * 210.00096 * 18 16 14 21 21 H 1.48506 * 109.46859 * 329.99970 * 18 16 14 22 22 C 1.46930 * 120.63143 * 184.96052 * 8 6 5 23 23 C 1.50700 * 109.47045 * 174.99918 * 3 2 1 24 24 C 1.38239 * 120.00095 * 259.99939 * 23 3 2 25 25 C 1.38230 * 120.00016 * 180.02562 * 24 23 3 26 26 C 1.38235 * 120.00099 * 0.02562 * 25 24 23 27 27 C 1.38230 * 120.00104 * 359.97438 * 26 25 24 28 28 C 1.38235 * 120.00020 * 80.01821 * 23 3 2 29 29 H 1.08998 * 109.46905 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47343 * 299.99780 * 1 2 3 31 31 H 1.08997 * 109.47510 * 60.00568 * 1 2 3 32 32 H 1.08994 * 109.47154 * 239.99549 * 2 1 3 33 33 H 1.09007 * 109.47008 * 119.99528 * 2 1 3 34 34 H 0.97000 * 120.00707 * 265.00169 * 5 3 2 35 35 H 1.09003 * 109.58368 * 246.14742 * 9 8 6 36 36 H 1.08995 * 109.58928 * 6.57580 * 9 8 6 37 37 H 1.09002 * 109.49964 * 174.58855 * 10 9 8 38 38 H 1.09005 * 109.49776 * 294.67780 * 10 9 8 39 39 H 1.08997 * 109.45992 * 58.65914 * 11 10 9 40 40 H 1.09002 * 109.45898 * 178.61795 * 11 10 9 41 41 H 0.97002 * 119.99410 * 180.02562 * 17 16 14 42 42 H 1.08999 * 109.58606 * 353.42348 * 22 8 6 43 43 H 1.09000 * 109.58352 * 113.85111 * 22 8 6 44 44 H 1.07997 * 119.99759 * 359.97438 * 24 23 3 45 45 H 1.08001 * 120.00223 * 179.97438 * 25 24 23 46 46 H 1.08003 * 120.00200 * 179.69632 * 26 25 24 47 47 H 1.08007 * 120.00042 * 179.97438 * 27 26 25 48 48 H 1.07999 * 120.00399 * 0.02562 * 28 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 7 1.6524 2.0974 -1.2519 6 6 0.4350 2.6643 -1.3671 7 8 -0.3702 2.5647 -0.4615 8 7 0.1103 3.3417 -2.4860 9 6 1.0269 3.3744 -3.6338 10 6 0.2682 2.9179 -4.8839 11 6 -0.9863 3.7773 -5.0566 12 6 -1.9014 3.5966 -3.8434 13 1 -2.1686 2.5446 -3.7425 14 6 -3.1512 4.4180 -4.0292 15 1 -3.2802 5.0103 -4.9231 16 6 -4.1295 4.4142 -3.0576 17 7 -5.2199 5.1314 -3.2197 18 14 -3.9062 3.3904 -1.5113 19 1 -3.2262 4.2049 -0.4723 20 1 -5.2344 2.9560 -1.0091 21 1 -3.0802 2.1963 -1.8232 22 6 -1.1699 4.0562 -2.5836 23 6 3.5418 1.4444 0.1239 24 6 4.1340 1.6873 1.3491 25 6 5.5116 1.6896 1.4626 26 6 6.2971 1.4494 0.3508 27 6 5.7050 1.2065 -0.8744 28 6 4.3273 1.2036 -0.9878 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.2719 2.1231 -1.9978 35 1 1.3935 4.3905 -3.7797 36 1 1.8662 2.7037 -3.4504 37 1 0.9086 3.0289 -5.7590 38 1 -0.0194 1.8723 -4.7734 39 1 -0.6996 4.8253 -5.1424 40 1 -1.5151 3.4706 -5.9591 41 1 -5.9080 5.1290 -2.5360 42 1 -1.7795 3.8351 -1.7075 43 1 -0.9860 5.1290 -2.6421 44 1 3.5203 1.8762 2.2175 45 1 5.9744 1.8798 2.4197 46 1 7.3736 1.4561 0.4384 47 1 6.3188 1.0193 -1.7432 48 1 3.8647 1.0145 -1.9453 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596217841.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:04 Heat of formation + Delta-G solvation = -1.186690 kcal Electronic energy + Delta-G solvation = -27476.315910 eV Core-core repulsion = 23917.063393 eV Total energy + Delta-G solvation = -3559.252517 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.50878 -39.36810 -37.39080 -35.57494 -33.61910 -32.27946 -31.49226 -31.19103 -31.05815 -30.33630 -26.31271 -25.20360 -24.37824 -22.96268 -22.27862 -22.01513 -20.87855 -19.90658 -19.05839 -18.02246 -16.94446 -16.66549 -16.28679 -15.48653 -15.43199 -15.05636 -14.63508 -14.12499 -13.97278 -13.88159 -13.81596 -13.64779 -13.41359 -13.10800 -12.98835 -12.75457 -12.56088 -12.20697 -12.12673 -12.00101 -11.41726 -11.35378 -11.29357 -11.02704 -10.94948 -10.73642 -10.58217 -10.34342 -10.07130 -9.76952 -9.60754 -9.22086 -9.20223 -9.08242 -9.05350 -8.81377 -8.55682 -7.93605 -6.07075 -4.08841 1.04342 1.11733 2.97378 3.43214 3.49170 3.52048 3.60309 3.64795 4.16349 4.38322 4.47056 4.59605 4.71181 4.83725 5.06588 5.10423 5.14195 5.22192 5.25691 5.27633 5.33813 5.43023 5.46817 5.65743 5.70740 5.76520 5.81030 5.90888 5.99137 6.10282 6.11257 6.15566 6.19199 6.22682 6.26609 6.32347 6.41285 6.57088 6.62538 6.68560 6.70514 6.71840 6.76087 6.91476 7.15336 7.35679 7.48425 7.76703 8.29677 8.51166 8.95399 8.98369 9.54636 11.04721 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.019643 B = 0.003802 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.072816 B = 7361.932827 C = 8182.261570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.125 4.125 3 C 0.203 3.797 4 H 0.095 0.905 5 N -0.746 5.746 6 C 0.702 3.298 7 O -0.584 6.584 8 N -0.625 5.625 9 C 0.116 3.884 10 C -0.136 4.136 11 C -0.099 4.099 12 C 0.004 3.996 13 H 0.030 0.970 14 C -0.516 4.516 15 H 0.077 0.923 16 C 0.072 3.928 17 N -0.897 5.897 18 Si 0.883 3.117 19 H -0.274 1.274 20 H -0.298 1.298 21 H -0.261 1.261 22 C 0.120 3.880 23 C -0.085 4.085 24 C -0.108 4.108 25 C -0.117 4.117 26 C -0.123 4.123 27 C -0.117 4.117 28 C -0.114 4.114 29 H 0.041 0.959 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.391 0.609 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.265 0.735 42 H 0.080 0.920 43 H 0.063 0.937 44 H 0.125 0.875 45 H 0.123 0.877 46 H 0.121 0.879 47 H 0.122 0.878 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.711 -8.993 4.793 25.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.164 4.164 3 C 0.097 3.903 4 H 0.113 0.887 5 N -0.406 5.406 6 C 0.404 3.596 7 O -0.462 6.462 8 N -0.361 5.361 9 C -0.007 4.007 10 C -0.174 4.174 11 C -0.137 4.137 12 C -0.016 4.016 13 H 0.048 0.952 14 C -0.554 4.554 15 H 0.095 0.905 16 C -0.131 4.131 17 N -0.535 5.535 18 Si 0.713 3.287 19 H -0.200 1.200 20 H -0.226 1.226 21 H -0.185 1.185 22 C -0.001 4.001 23 C -0.085 4.085 24 C -0.127 4.127 25 C -0.135 4.135 26 C -0.141 4.141 27 C -0.135 4.135 28 C -0.132 4.132 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.229 0.771 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.098 0.902 43 H 0.081 0.919 44 H 0.143 0.857 45 H 0.141 0.859 46 H 0.139 0.861 47 H 0.140 0.860 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 22.917 -8.972 5.541 25.226 hybrid contribution 0.400 -0.466 0.481 0.780 sum 23.317 -9.438 6.022 25.865 Atomic orbital electron populations 1.21840 0.94086 1.00216 1.04118 1.21938 0.97484 0.95132 1.01802 1.19687 0.88974 0.93811 0.87806 0.88693 1.45431 1.16501 1.62131 1.16508 1.15881 0.81978 0.78481 0.83256 1.90918 1.49542 1.65217 1.40486 1.47662 1.21375 1.53826 1.13254 1.21537 0.91539 1.00824 0.86840 1.21989 0.98465 1.00765 0.96225 1.21422 0.94158 0.98511 0.99608 1.19421 0.94115 0.97721 0.90336 0.95223 1.20954 0.99697 1.28303 1.06456 0.90538 1.25057 0.94937 0.94819 0.98270 1.69902 1.08293 1.40300 1.34995 0.86934 0.76147 0.82160 0.83490 1.20017 1.22580 1.18549 1.22386 0.81240 0.94848 1.01613 1.20030 0.94995 0.99476 0.94037 1.21042 0.94957 0.99570 0.97084 1.21147 0.93659 0.99926 0.98778 1.21168 0.99844 1.00132 0.93001 1.21136 0.94658 0.99947 0.97735 1.20943 0.93770 1.00295 0.98212 0.94000 0.92138 0.91495 0.92079 0.91510 0.77141 0.91626 0.91943 0.91758 0.92067 0.92536 0.92283 0.92568 0.90187 0.91900 0.85742 0.85943 0.86128 0.85963 0.86235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 8.46 37.16 0.31 -1.91 16 2 C -0.12 -1.51 5.59 -26.73 -0.15 -1.66 16 3 C 0.20 2.53 2.46 -69.08 -0.17 2.36 16 4 H 0.10 1.35 7.50 -51.93 -0.39 0.96 16 5 N -0.75 -10.31 4.89 -59.81 -0.29 -10.60 16 6 C 0.70 13.03 7.02 -86.92 -0.61 12.42 16 7 O -0.58 -13.03 12.57 5.28 0.07 -12.96 16 8 N -0.62 -11.59 2.98 -178.76 -0.53 -12.12 16 9 C 0.12 1.62 6.39 -3.71 -0.02 1.60 16 10 C -0.14 -1.98 6.08 -26.61 -0.16 -2.14 16 11 C -0.10 -1.86 5.11 -26.69 -0.14 -2.00 16 12 C 0.00 0.09 1.83 -91.87 -0.17 -0.08 16 13 H 0.03 0.74 7.20 -51.93 -0.37 0.37 16 14 C -0.52 -14.39 9.15 -34.44 -0.31 -14.71 16 15 H 0.08 2.27 7.99 -52.48 -0.42 1.85 16 16 C 0.07 2.10 5.45 -17.82 -0.10 2.01 16 17 N -0.90 -27.74 13.96 55.43 0.77 -26.96 16 18 Si 0.88 23.63 24.32 -169.99 -4.13 19.50 16 19 H -0.27 -7.42 6.92 56.52 0.39 -7.02 16 20 H -0.30 -7.96 7.11 56.52 0.40 -7.56 16 21 H -0.26 -7.00 6.53 56.52 0.37 -6.63 16 22 C 0.12 2.71 5.10 -3.93 -0.02 2.69 16 23 C -0.08 -0.88 4.95 -104.62 -0.52 -1.40 16 24 C -0.11 -1.03 9.67 -39.58 -0.38 -1.41 16 25 C -0.12 -0.96 10.05 -39.59 -0.40 -1.36 16 26 C -0.12 -0.96 10.05 -39.59 -0.40 -1.36 16 27 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 28 C -0.11 -1.04 9.06 -39.58 -0.36 -1.40 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 1.00 7.80 -51.93 -0.40 0.59 16 31 H 0.07 1.24 5.55 -51.93 -0.29 0.95 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.39 4.43 4.36 -40.82 -0.18 4.26 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.68 5.65 -51.93 -0.29 0.38 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 42 H 0.08 2.04 2.30 -51.93 -0.12 1.92 16 43 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 44 H 0.12 1.06 8.04 -52.49 -0.42 0.64 16 45 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 46 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 47 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 48 H 0.12 0.96 6.91 -52.49 -0.36 0.59 16 LS Contribution 364.77 15.07 5.50 5.50 Total: -1.00 -33.36 364.77 -10.11 -43.48 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -7.50 Total: 3.84 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: -3.99 Total: -9.67 kcal Atomic # 7 Polarization: -49.63 SS G_CDS: -0.05 Total: -49.68 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.07 Total: -12.96 kcal Atomic # 14 Polarization: 23.63 SS G_CDS: -4.13 Total: 19.50 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.36 -10.11 -43.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596217841.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.292 kcal (2) G-P(sol) polarization free energy of solvation -33.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds