Wall clock time and date at job start Tue Mar 31 2020 12:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46738 * 2 1 4 4 H 1.08993 * 109.47444 * 55.00137 * 3 2 1 5 5 N 1.46499 * 109.47044 * 294.99356 * 3 2 1 6 6 C 1.34781 * 119.99762 * 85.00392 * 5 3 2 7 7 O 1.21594 * 119.99964 * 355.69902 * 6 5 3 8 8 N 1.34772 * 120.00214 * 175.69486 * 6 5 3 9 9 C 1.46924 * 120.62749 * 5.24807 * 8 6 5 10 10 C 1.53191 * 108.77606 * 126.36887 * 9 8 6 11 11 C 1.53038 * 109.31518 * 54.63069 * 10 9 8 12 12 C 1.53037 * 109.53671 * 298.63555 * 11 10 9 13 13 H 1.09004 * 109.50157 * 301.41400 * 12 11 10 14 14 C 1.50706 * 109.49897 * 181.32013 * 12 11 10 15 15 H 1.08005 * 119.99581 * 359.97438 * 14 12 11 16 16 C 1.37874 * 120.00116 * 180.02562 * 14 12 11 17 17 N 1.31517 * 119.99438 * 179.97438 * 16 14 12 18 18 Si 1.86798 * 120.00185 * 359.97438 * 16 14 12 19 19 H 1.48501 * 109.47079 * 89.99729 * 18 16 14 20 20 H 1.48493 * 109.46945 * 210.00096 * 18 16 14 21 21 H 1.48506 * 109.46859 * 329.99970 * 18 16 14 22 22 C 1.46930 * 120.63143 * 184.96052 * 8 6 5 23 23 C 1.50700 * 109.47045 * 174.99918 * 3 2 1 24 24 C 1.38239 * 120.00095 * 259.99939 * 23 3 2 25 25 C 1.38230 * 120.00016 * 180.02562 * 24 23 3 26 26 C 1.38235 * 120.00099 * 0.02562 * 25 24 23 27 27 C 1.38230 * 120.00104 * 359.97438 * 26 25 24 28 28 C 1.38235 * 120.00020 * 80.01821 * 23 3 2 29 29 H 1.08998 * 109.46905 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47343 * 299.99780 * 1 2 3 31 31 H 1.08997 * 109.47510 * 60.00568 * 1 2 3 32 32 H 1.08994 * 109.47154 * 239.99549 * 2 1 3 33 33 H 1.09007 * 109.47008 * 119.99528 * 2 1 3 34 34 H 0.97000 * 120.00707 * 265.00169 * 5 3 2 35 35 H 1.09003 * 109.58368 * 246.14742 * 9 8 6 36 36 H 1.08995 * 109.58928 * 6.57580 * 9 8 6 37 37 H 1.09002 * 109.49964 * 174.58855 * 10 9 8 38 38 H 1.09005 * 109.49776 * 294.67780 * 10 9 8 39 39 H 1.08997 * 109.45992 * 58.65914 * 11 10 9 40 40 H 1.09002 * 109.45898 * 178.61795 * 11 10 9 41 41 H 0.97002 * 119.99410 * 180.02562 * 17 16 14 42 42 H 1.08999 * 109.58606 * 353.42348 * 22 8 6 43 43 H 1.09000 * 109.58352 * 113.85111 * 22 8 6 44 44 H 1.07997 * 119.99759 * 359.97438 * 24 23 3 45 45 H 1.08001 * 120.00223 * 179.97438 * 25 24 23 46 46 H 1.08003 * 120.00200 * 179.69632 * 26 25 24 47 47 H 1.08007 * 120.00042 * 179.97438 * 27 26 25 48 48 H 1.07999 * 120.00399 * 0.02562 * 28 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 7 1.6524 2.0974 -1.2519 6 6 0.4350 2.6643 -1.3671 7 8 -0.3702 2.5647 -0.4615 8 7 0.1103 3.3417 -2.4860 9 6 1.0269 3.3744 -3.6338 10 6 0.2682 2.9179 -4.8839 11 6 -0.9863 3.7773 -5.0566 12 6 -1.9014 3.5966 -3.8434 13 1 -2.1686 2.5446 -3.7425 14 6 -3.1512 4.4180 -4.0292 15 1 -3.2802 5.0103 -4.9231 16 6 -4.1295 4.4142 -3.0576 17 7 -5.2199 5.1314 -3.2197 18 14 -3.9062 3.3904 -1.5113 19 1 -3.2262 4.2049 -0.4723 20 1 -5.2344 2.9560 -1.0091 21 1 -3.0802 2.1963 -1.8232 22 6 -1.1699 4.0562 -2.5836 23 6 3.5418 1.4444 0.1239 24 6 4.1340 1.6873 1.3491 25 6 5.5116 1.6896 1.4626 26 6 6.2971 1.4494 0.3508 27 6 5.7050 1.2065 -0.8744 28 6 4.3273 1.2036 -0.9878 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.2719 2.1231 -1.9978 35 1 1.3935 4.3905 -3.7797 36 1 1.8662 2.7037 -3.4504 37 1 0.9086 3.0289 -5.7590 38 1 -0.0194 1.8723 -4.7734 39 1 -0.6996 4.8253 -5.1424 40 1 -1.5151 3.4706 -5.9591 41 1 -5.9080 5.1290 -2.5360 42 1 -1.7795 3.8351 -1.7075 43 1 -0.9860 5.1290 -2.6421 44 1 3.5203 1.8762 2.2175 45 1 5.9744 1.8798 2.4197 46 1 7.3736 1.4561 0.4384 47 1 6.3188 1.0193 -1.7432 48 1 3.8647 1.0145 -1.9453 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596217841.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:04 Heat of formation + Delta-G solvation = -21.734408 kcal Electronic energy + Delta-G solvation = -27477.206926 eV Core-core repulsion = 23917.063393 eV Total energy + Delta-G solvation = -3560.143533 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.74890 -40.26816 -38.77356 -36.74691 -35.42624 -33.99382 -32.78169 -32.19314 -31.87990 -31.66085 -27.47349 -26.93885 -25.88306 -23.66330 -23.54019 -23.13756 -22.02159 -21.23249 -20.49644 -19.29950 -18.87682 -17.77007 -17.43118 -16.81965 -16.64824 -16.14104 -15.83670 -15.48019 -15.35560 -15.29822 -15.04605 -14.87112 -14.59092 -14.31146 -14.20475 -13.96677 -13.93830 -13.66840 -13.24913 -13.14125 -12.91070 -12.82405 -12.56906 -12.30684 -12.13888 -11.98836 -11.85247 -11.82589 -11.71643 -11.57642 -11.27888 -11.04442 -10.95391 -10.79121 -10.17443 -9.81555 -9.67112 -9.40249 -8.39306 -6.40751 0.38326 0.50451 1.23626 1.29985 1.44578 1.67207 2.15402 2.21697 2.84677 2.95718 3.01372 3.53694 3.91736 3.97496 4.04698 4.07526 4.14321 4.18089 4.20037 4.29879 4.40631 4.44392 4.53381 4.56623 4.63085 4.66292 4.71040 4.75877 4.87289 4.88492 4.95324 4.99939 5.04167 5.10990 5.14551 5.16796 5.21014 5.39389 5.44455 5.46833 5.54443 5.56973 5.62869 5.63933 5.70377 5.73270 6.00976 6.10640 6.27081 6.68231 7.01842 7.25106 7.58681 8.76625 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.019643 B = 0.003802 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.072816 B = 7361.932827 C = 8182.261570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.116 4.116 3 C 0.205 3.795 4 H 0.070 0.930 5 N -0.725 5.725 6 C 0.697 3.303 7 O -0.628 6.628 8 N -0.629 5.629 9 C 0.110 3.890 10 C -0.126 4.126 11 C -0.097 4.097 12 C 0.004 3.996 13 H 0.011 0.989 14 C -0.510 4.510 15 H 0.052 0.948 16 C 0.029 3.971 17 N -0.938 5.938 18 Si 0.942 3.058 19 H -0.284 1.284 20 H -0.297 1.297 21 H -0.267 1.267 22 C 0.129 3.871 23 C -0.098 4.098 24 C -0.123 4.123 25 C -0.122 4.122 26 C -0.124 4.124 27 C -0.119 4.119 28 C -0.119 4.119 29 H 0.054 0.946 30 H 0.038 0.962 31 H 0.032 0.968 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.406 0.594 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.108 0.892 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.267 0.733 42 H 0.048 0.952 43 H 0.060 0.940 44 H 0.124 0.876 45 H 0.140 0.860 46 H 0.144 0.856 47 H 0.146 0.854 48 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.164 -10.387 4.121 30.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.155 4.155 3 C 0.100 3.900 4 H 0.088 0.912 5 N -0.385 5.385 6 C 0.398 3.602 7 O -0.509 6.509 8 N -0.366 5.366 9 C -0.012 4.012 10 C -0.164 4.164 11 C -0.135 4.135 12 C -0.016 4.016 13 H 0.029 0.971 14 C -0.548 4.548 15 H 0.070 0.930 16 C -0.170 4.170 17 N -0.578 5.578 18 Si 0.772 3.228 19 H -0.211 1.211 20 H -0.225 1.225 21 H -0.193 1.193 22 C 0.006 3.994 23 C -0.098 4.098 24 C -0.141 4.141 25 C -0.140 4.140 26 C -0.142 4.142 27 C -0.136 4.136 28 C -0.138 4.138 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.246 0.754 35 H 0.102 0.898 36 H 0.120 0.880 37 H 0.126 0.874 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.078 0.922 44 H 0.142 0.858 45 H 0.158 0.842 46 H 0.162 0.838 47 H 0.164 0.836 48 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 27.439 -10.389 4.840 29.736 hybrid contribution -0.904 -0.023 0.662 1.121 sum 26.535 -10.412 5.502 29.030 Atomic orbital electron populations 1.21753 0.96647 1.00084 1.01344 1.21880 0.94883 0.95293 1.03400 1.19664 0.90743 0.93394 0.86183 0.91204 1.45234 1.14861 1.60824 1.17534 1.16073 0.82870 0.78542 0.82669 1.90891 1.51221 1.66723 1.42084 1.47556 1.20630 1.53492 1.14891 1.21911 0.91501 1.03058 0.84708 1.21936 0.96898 0.99269 0.98314 1.21361 0.95344 0.99902 0.96886 1.19348 0.93517 0.95399 0.93299 0.97065 1.21331 1.01360 1.27279 1.04849 0.93025 1.25613 0.95047 0.95851 1.00489 1.69990 1.09359 1.42341 1.36143 0.86010 0.75377 0.80566 0.80857 1.21073 1.22502 1.19260 1.21841 0.83100 0.95043 0.99442 1.19822 0.93269 1.01628 0.95118 1.21181 0.95865 1.00075 0.96993 1.21411 0.93116 0.99468 1.00039 1.21538 1.01152 0.98805 0.92689 1.21453 0.94401 0.99052 0.98734 1.21113 0.94369 1.00145 0.98146 0.92722 0.94309 0.94845 0.90558 0.89665 0.75370 0.89835 0.88028 0.87351 0.92555 0.92162 0.92636 0.92415 0.93363 0.92195 0.85811 0.84173 0.83792 0.83591 0.85009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.34 8.46 71.98 0.61 -3.73 16 2 C -0.12 -2.64 5.59 30.59 0.17 -2.47 16 3 C 0.21 4.90 2.46 44.25 0.11 5.01 16 4 H 0.07 2.03 7.50 -2.39 -0.02 2.02 16 5 N -0.72 -18.73 4.89 -461.41 -2.26 -20.98 16 6 C 0.70 25.55 7.02 179.05 1.26 26.80 16 7 O -0.63 -28.84 12.57 -4.01 -0.05 -28.89 16 8 N -0.63 -22.62 2.98 -837.75 -2.50 -25.11 16 9 C 0.11 2.66 6.39 86.36 0.55 3.21 16 10 C -0.13 -3.20 6.08 30.67 0.19 -3.02 16 11 C -0.10 -3.49 5.11 30.62 0.16 -3.34 16 12 C 0.00 0.20 1.83 -11.61 -0.02 0.17 16 13 H 0.01 0.57 7.20 -2.38 -0.02 0.55 16 14 C -0.51 -29.23 9.15 25.60 0.23 -29.00 16 15 H 0.05 3.16 7.99 -2.91 -0.02 3.14 16 16 C 0.03 1.73 5.45 84.65 0.46 2.19 16 17 N -0.94 -59.88 13.96 21.45 0.30 -59.58 16 18 Si 0.94 51.58 24.32 68.60 1.67 53.25 16 19 H -0.28 -15.82 6.92 99.48 0.69 -15.13 16 20 H -0.30 -15.98 7.11 99.48 0.71 -15.28 16 21 H -0.27 -14.74 6.53 99.48 0.65 -14.09 16 22 C 0.13 5.87 5.10 86.22 0.44 6.31 16 23 C -0.10 -1.81 4.95 -19.86 -0.10 -1.91 16 24 C -0.12 -2.12 9.67 22.27 0.22 -1.90 16 25 C -0.12 -1.67 10.05 22.27 0.22 -1.45 16 26 C -0.12 -1.46 10.05 22.27 0.22 -1.23 16 27 C -0.12 -1.41 10.05 22.27 0.22 -1.19 16 28 C -0.12 -1.75 9.06 22.27 0.20 -1.55 16 29 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.04 1.32 7.80 -2.39 -0.02 1.30 16 31 H 0.03 1.24 5.55 -2.39 -0.01 1.23 16 32 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 34 H 0.41 7.78 4.36 -92.71 -0.40 7.38 16 35 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.10 1.67 5.65 -2.39 -0.01 1.66 16 37 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 39 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 42 H 0.05 2.53 2.30 -2.39 -0.01 2.52 16 43 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 44 H 0.12 2.04 8.04 -2.91 -0.02 2.01 16 45 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 46 H 0.14 0.98 8.06 -2.91 -0.02 0.96 16 47 H 0.15 1.02 8.06 -2.91 -0.02 1.00 16 48 H 0.13 1.52 6.91 -2.91 -0.02 1.50 16 Total: -1.00 -77.25 364.77 2.78 -74.46 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 0.47 Total: 13.95 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: 5.14 Total: -7.09 kcal Atomic # 7 Polarization: -101.22 SS G_CDS: -4.45 Total: -105.67 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -0.05 Total: -28.89 kcal Atomic # 14 Polarization: 51.58 SS G_CDS: 1.67 Total: 53.25 kcal Total: -77.25 2.78 -74.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596217841.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.728 kcal (2) G-P(sol) polarization free energy of solvation -77.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds