Wall clock time and date at job start Tue Mar 31 2020 13:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.73856 * 2 1 4 4 C 1.53387 * 109.60698 * 239.58341 * 2 1 3 5 5 C 1.53053 * 107.91354 * 171.97030 * 4 2 1 6 6 C 1.50802 * 109.64780 * 47.32325 * 5 4 2 7 7 C 1.38613 * 118.12283 * 164.56242 * 6 5 4 8 8 C 1.38051 * 120.48938 * 179.63716 * 7 6 5 9 9 C 1.38301 * 119.88739 * 0.02562 * 8 7 6 10 10 C 1.37808 * 119.95533 * 0.12348 * 9 8 7 11 11 C 1.38375 * 122.01510 * 344.43924 * 6 5 4 12 12 N 1.39412 * 122.96503 * 0.52214 * 11 6 5 13 13 C 1.46902 * 110.99274 * 105.57525 * 12 11 6 14 14 C 1.52992 * 109.47460 * 76.06132 * 13 12 11 15 15 N 1.46499 * 109.47595 * 179.97438 * 14 13 12 16 16 C 1.34775 * 120.00261 * 179.72414 * 15 14 13 17 17 O 1.21277 * 120.00219 * 0.27328 * 16 15 14 18 18 C 1.50701 * 119.99964 * 180.28132 * 16 15 14 19 19 C 1.53002 * 109.47093 * 180.02562 * 18 16 15 20 20 C 1.50705 * 109.46753 * 179.97438 * 19 18 16 21 21 H 1.07995 * 120.00582 * 359.97438 * 20 19 18 22 22 C 1.37876 * 119.99624 * 179.97438 * 20 19 18 23 23 N 1.31510 * 120.00207 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 120.00114 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.47331 * 89.99818 * 24 22 20 26 26 H 1.48497 * 109.47426 * 209.99980 * 24 22 20 27 27 H 1.48502 * 109.46839 * 329.99960 * 24 22 20 28 28 H 1.08998 * 109.46896 * 290.87243 * 1 2 3 29 29 H 1.08989 * 109.47210 * 50.87744 * 1 2 3 30 30 H 1.09006 * 109.46561 * 170.87948 * 1 2 3 31 31 H 1.08993 * 109.76816 * 52.36903 * 4 2 1 32 32 H 1.08992 * 109.81783 * 291.60048 * 4 2 1 33 33 H 1.08992 * 109.44062 * 287.26611 * 5 4 2 34 34 H 1.09000 * 109.40675 * 167.35527 * 5 4 2 35 35 H 1.08003 * 119.74943 * 359.62448 * 7 6 5 36 36 H 1.08000 * 120.05202 * 179.97438 * 8 7 6 37 37 H 1.08007 * 120.02574 * 180.10095 * 9 8 7 38 38 H 1.08003 * 119.78757 * 180.02562 * 10 9 8 39 39 H 1.08997 * 109.47324 * 316.05593 * 13 12 11 40 40 H 1.09004 * 109.46912 * 196.06129 * 13 12 11 41 41 H 1.09005 * 109.47336 * 59.99692 * 14 13 12 42 42 H 1.08998 * 109.47381 * 300.00176 * 14 13 12 43 43 H 0.97004 * 119.99593 * 0.02562 * 15 14 13 44 44 H 1.09004 * 109.46962 * 299.99877 * 18 16 15 45 45 H 1.08994 * 109.47414 * 59.99568 * 18 16 15 46 46 H 1.08996 * 109.46742 * 299.99510 * 19 18 16 47 47 H 1.08991 * 109.47094 * 59.99835 * 19 18 16 48 48 H 0.97001 * 120.00634 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8982 1.0260 0.0000 4 6 2.0447 -0.7315 -1.2461 5 6 3.5611 -0.5356 -1.3142 6 6 4.1697 -0.8152 0.0370 7 6 5.5401 -1.0111 0.1084 8 6 6.1493 -1.2629 1.3214 9 6 5.3893 -1.3212 2.4754 10 6 4.0260 -1.1305 2.4118 11 6 3.4040 -0.8769 1.1879 12 7 2.0214 -0.6981 1.1896 13 6 1.3253 -1.9786 1.3736 14 6 1.4153 -2.4018 2.8411 15 7 0.7207 -3.6785 3.0247 16 6 0.6744 -4.2513 4.2438 17 8 1.2035 -3.7074 5.1898 18 6 -0.0348 -5.5677 4.4314 19 6 0.0594 -5.9933 5.8980 20 6 -0.6503 -7.3095 6.0856 21 1 -1.1217 -7.7938 5.2432 22 6 -0.6977 -7.8954 7.3328 23 7 -1.3175 -9.0437 7.4967 24 14 0.1182 -7.0582 8.7897 25 1 -0.8567 -6.1541 9.4510 26 1 0.5761 -8.0861 9.7587 27 1 1.2841 -6.2687 8.3177 28 1 -0.3633 0.3661 0.9602 29 1 -0.3633 0.6484 -0.7972 30 1 -0.3633 -1.0148 -0.1629 31 1 1.5785 -0.3132 -2.1380 32 1 1.8131 -1.7941 -1.1728 33 1 3.7815 0.4911 -1.6060 34 1 3.9821 -1.2204 -2.0504 35 1 6.1355 -0.9666 -0.7916 36 1 7.2175 -1.4149 1.3688 37 1 5.8639 -1.5164 3.4257 38 1 3.4352 -1.1762 3.3147 39 1 1.7915 -2.7389 0.7469 40 1 0.2785 -1.8670 1.0911 41 1 0.9490 -1.6415 3.4677 42 1 2.4621 -2.5134 3.1235 43 1 0.2978 -4.1138 2.2679 44 1 -1.0826 -5.4591 4.1515 45 1 0.4326 -6.3251 3.8021 46 1 1.1071 -6.1019 6.1782 47 1 -0.4083 -5.2359 6.5268 48 1 -1.3512 -9.4558 8.3742 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343629607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:33 Heat of formation + Delta-G solvation = -12.715889 kcal Electronic energy + Delta-G solvation = -26199.210304 eV Core-core repulsion = 22639.457844 eV Total energy + Delta-G solvation = -3559.752460 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.20258 -39.17710 -37.71269 -35.38600 -33.71543 -33.44907 -32.11854 -31.32437 -30.24977 -29.15685 -27.78037 -25.99672 -24.18013 -22.99868 -22.35307 -22.32220 -21.09722 -19.82464 -19.11522 -17.43393 -17.07148 -16.65893 -16.24802 -15.79829 -15.59315 -15.34870 -14.86828 -14.73954 -14.36687 -14.27191 -14.06547 -13.92858 -13.39179 -13.20117 -13.04452 -12.76150 -12.60485 -12.53788 -12.49741 -12.13573 -11.90558 -11.71669 -11.46450 -11.38584 -11.25988 -11.00344 -10.94206 -10.83168 -10.14139 -10.02147 -9.76391 -9.57349 -9.22434 -9.14543 -8.97953 -8.76797 -8.48844 -8.19097 -6.01343 -3.99963 1.11396 1.17773 3.07223 3.16631 3.39746 3.46176 3.54146 3.57587 3.79336 4.27040 4.35187 4.37626 4.52849 4.57362 4.77128 4.81548 4.85197 4.90565 4.97260 5.00167 5.12871 5.21698 5.25773 5.32067 5.34289 5.37784 5.42448 5.47586 5.50592 5.59721 5.74112 5.78402 5.80629 5.86552 5.93797 6.10538 6.12011 6.13232 6.22440 6.36259 6.51623 6.66512 6.71632 6.73661 7.14166 7.39212 7.46241 7.77640 7.82539 8.52076 8.69040 9.01820 9.61876 11.11499 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.018956 B = 0.002622 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.732253 B =10676.595343 C =11556.990735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.086 3.914 3 H 0.090 0.910 4 C -0.154 4.154 5 C -0.078 4.078 6 C -0.120 4.120 7 C -0.108 4.108 8 C -0.132 4.132 9 C -0.108 4.108 10 C -0.120 4.120 11 C 0.110 3.890 12 N -0.491 5.491 13 C 0.041 3.959 14 C 0.112 3.888 15 N -0.742 5.742 16 C 0.511 3.489 17 O -0.539 6.539 18 C -0.122 4.122 19 C 0.001 3.999 20 C -0.524 4.524 21 H 0.072 0.928 22 C 0.069 3.931 23 N -0.904 5.904 24 Si 0.877 3.123 25 H -0.277 1.277 26 H -0.289 1.289 27 H -0.261 1.261 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.125 0.875 38 H 0.134 0.866 39 H 0.048 0.952 40 H 0.095 0.905 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.397 0.603 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.023 0.977 47 H 0.019 0.981 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.952 20.662 -22.190 31.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.022 4.022 3 H 0.108 0.892 4 C -0.192 4.192 5 C -0.115 4.115 6 C -0.123 4.123 7 C -0.126 4.126 8 C -0.151 4.151 9 C -0.127 4.127 10 C -0.140 4.140 11 C 0.014 3.986 12 N -0.208 5.208 13 C -0.084 4.084 14 C -0.012 4.012 15 N -0.396 5.396 16 C 0.299 3.701 17 O -0.415 6.415 18 C -0.162 4.162 19 C -0.036 4.036 20 C -0.562 4.562 21 H 0.090 0.910 22 C -0.133 4.133 23 N -0.543 5.543 24 Si 0.704 3.296 25 H -0.202 1.202 26 H -0.215 1.215 27 H -0.185 1.185 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.143 0.857 38 H 0.152 0.848 39 H 0.067 0.933 40 H 0.114 0.886 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.230 0.770 44 H 0.104 0.896 45 H 0.103 0.897 46 H 0.042 0.958 47 H 0.037 0.963 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.118 21.223 -20.957 31.496 hybrid contribution 0.444 -0.301 -0.228 0.583 sum 10.563 20.922 -21.185 31.593 Atomic orbital electron populations 1.22010 0.93607 1.02318 1.03086 1.21767 0.95672 0.98084 0.86675 0.89202 1.22282 0.95870 1.01558 0.99537 1.20516 0.94982 1.02124 0.93859 1.19905 0.94319 1.03767 0.94320 1.20941 0.93620 1.00162 0.97918 1.21068 0.99858 1.01475 0.92701 1.21063 0.93686 0.99252 0.98653 1.21353 0.94743 1.00814 0.97072 1.18444 0.88294 0.99339 0.92567 1.58542 1.02394 1.20945 1.38943 1.22459 1.00076 0.89098 0.96805 1.21525 0.98445 0.86099 0.95104 1.46083 1.58592 1.23517 1.11444 1.21507 0.79552 0.87538 0.81491 1.90652 1.45877 1.64804 1.40185 1.21664 1.00097 0.91612 1.02802 1.19366 0.97813 0.96633 0.89831 1.21120 1.34864 1.04082 0.96174 0.90957 1.24973 0.94764 0.94648 0.98880 1.69909 1.43408 1.17376 1.23629 0.86794 0.80983 0.79370 0.82409 1.20231 1.21469 1.18499 0.91120 0.91550 0.91981 0.90458 0.91323 0.90568 0.90567 0.86323 0.86130 0.85739 0.84788 0.93339 0.88646 0.91003 0.90826 0.76995 0.89641 0.89657 0.95833 0.96260 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 8.31 37.16 0.31 -0.62 16 2 C 0.09 0.63 2.83 -67.77 -0.19 0.44 16 3 H 0.09 0.69 8.11 -51.93 -0.42 0.27 16 4 C -0.15 -0.99 5.32 -26.50 -0.14 -1.13 16 5 C -0.08 -0.54 5.81 -27.81 -0.16 -0.70 16 6 C -0.12 -1.13 5.74 -104.38 -0.60 -1.73 16 7 C -0.11 -0.96 9.63 -39.51 -0.38 -1.34 16 8 C -0.13 -1.22 10.05 -39.63 -0.40 -1.62 16 9 C -0.11 -1.12 10.03 -39.72 -0.40 -1.52 16 10 C -0.12 -1.37 8.14 -39.22 -0.32 -1.69 16 11 C 0.11 1.16 5.02 -83.85 -0.42 0.74 16 12 N -0.49 -4.69 4.36 -163.73 -0.71 -5.40 16 13 C 0.04 0.38 4.21 -3.83 -0.02 0.37 16 14 C 0.11 1.40 5.14 -4.05 -0.02 1.37 16 15 N -0.74 -9.96 5.56 -60.30 -0.33 -10.30 16 16 C 0.51 9.41 7.83 -10.99 -0.09 9.32 16 17 O -0.54 -12.15 15.98 5.56 0.09 -12.06 16 18 C -0.12 -2.38 5.64 -27.88 -0.16 -2.53 16 19 C 0.00 0.04 3.33 -27.88 -0.09 -0.06 16 20 C -0.52 -15.13 9.66 -34.44 -0.33 -15.46 16 21 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 22 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 23 N -0.90 -28.22 13.96 55.43 0.77 -27.44 16 24 Si 0.88 22.81 27.47 -169.99 -4.67 18.14 16 25 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 27 H -0.26 -6.76 6.54 56.52 0.37 -6.39 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.32 8.14 -51.94 -0.42 -0.11 16 30 H 0.06 0.36 6.40 -51.93 -0.33 0.03 16 31 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.49 6.95 -51.93 -0.36 0.13 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.12 0.81 8.06 -52.48 -0.42 0.38 16 36 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 37 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 38 H 0.13 1.62 6.02 -52.48 -0.32 1.30 16 39 H 0.05 0.46 7.34 -51.93 -0.38 0.08 16 40 H 0.10 0.75 5.13 -51.93 -0.27 0.49 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.07 1.02 4.99 -51.93 -0.26 0.76 16 43 H 0.40 4.08 8.47 -40.82 -0.35 3.73 16 44 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 45 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 46 H 0.02 0.62 7.15 -51.93 -0.37 0.25 16 47 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 48 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 373.95 15.07 5.64 5.64 Total: -1.00 -34.65 373.95 -10.41 -45.06 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -7.68 Total: 0.57 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: -3.51 Total: -14.20 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: -0.28 Total: -43.14 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.09 Total: -12.06 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.67 Total: 18.14 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.65 -10.41 -45.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343629607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.340 kcal (2) G-P(sol) polarization free energy of solvation -34.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds