Wall clock time and date at job start Tue Mar 31 2020 13:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.73856 * 2 1 4 4 C 1.53387 * 109.60698 * 239.58341 * 2 1 3 5 5 C 1.53053 * 107.91354 * 171.97030 * 4 2 1 6 6 C 1.50802 * 109.64780 * 47.32325 * 5 4 2 7 7 C 1.38613 * 118.12283 * 164.56242 * 6 5 4 8 8 C 1.38051 * 120.48938 * 179.63716 * 7 6 5 9 9 C 1.38301 * 119.88739 * 0.02562 * 8 7 6 10 10 C 1.37808 * 119.95533 * 0.12348 * 9 8 7 11 11 C 1.38375 * 122.01510 * 344.43924 * 6 5 4 12 12 N 1.39412 * 122.96503 * 0.52214 * 11 6 5 13 13 C 1.46902 * 110.99274 * 105.57525 * 12 11 6 14 14 C 1.52992 * 109.47460 * 76.06132 * 13 12 11 15 15 N 1.46499 * 109.47595 * 179.97438 * 14 13 12 16 16 C 1.34775 * 120.00261 * 179.72414 * 15 14 13 17 17 O 1.21277 * 120.00219 * 0.27328 * 16 15 14 18 18 C 1.50701 * 119.99964 * 180.28132 * 16 15 14 19 19 C 1.53002 * 109.47093 * 180.02562 * 18 16 15 20 20 C 1.50705 * 109.46753 * 179.97438 * 19 18 16 21 21 H 1.07995 * 120.00582 * 359.97438 * 20 19 18 22 22 C 1.37876 * 119.99624 * 179.97438 * 20 19 18 23 23 N 1.31510 * 120.00207 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 120.00114 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.47331 * 89.99818 * 24 22 20 26 26 H 1.48497 * 109.47426 * 209.99980 * 24 22 20 27 27 H 1.48502 * 109.46839 * 329.99960 * 24 22 20 28 28 H 1.08998 * 109.46896 * 290.87243 * 1 2 3 29 29 H 1.08989 * 109.47210 * 50.87744 * 1 2 3 30 30 H 1.09006 * 109.46561 * 170.87948 * 1 2 3 31 31 H 1.08993 * 109.76816 * 52.36903 * 4 2 1 32 32 H 1.08992 * 109.81783 * 291.60048 * 4 2 1 33 33 H 1.08992 * 109.44062 * 287.26611 * 5 4 2 34 34 H 1.09000 * 109.40675 * 167.35527 * 5 4 2 35 35 H 1.08003 * 119.74943 * 359.62448 * 7 6 5 36 36 H 1.08000 * 120.05202 * 179.97438 * 8 7 6 37 37 H 1.08007 * 120.02574 * 180.10095 * 9 8 7 38 38 H 1.08003 * 119.78757 * 180.02562 * 10 9 8 39 39 H 1.08997 * 109.47324 * 316.05593 * 13 12 11 40 40 H 1.09004 * 109.46912 * 196.06129 * 13 12 11 41 41 H 1.09005 * 109.47336 * 59.99692 * 14 13 12 42 42 H 1.08998 * 109.47381 * 300.00176 * 14 13 12 43 43 H 0.97004 * 119.99593 * 0.02562 * 15 14 13 44 44 H 1.09004 * 109.46962 * 299.99877 * 18 16 15 45 45 H 1.08994 * 109.47414 * 59.99568 * 18 16 15 46 46 H 1.08996 * 109.46742 * 299.99510 * 19 18 16 47 47 H 1.08991 * 109.47094 * 59.99835 * 19 18 16 48 48 H 0.97001 * 120.00634 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8982 1.0260 0.0000 4 6 2.0447 -0.7315 -1.2461 5 6 3.5611 -0.5356 -1.3142 6 6 4.1697 -0.8152 0.0370 7 6 5.5401 -1.0111 0.1084 8 6 6.1493 -1.2629 1.3214 9 6 5.3893 -1.3212 2.4754 10 6 4.0260 -1.1305 2.4118 11 6 3.4040 -0.8769 1.1879 12 7 2.0214 -0.6981 1.1896 13 6 1.3253 -1.9786 1.3736 14 6 1.4153 -2.4018 2.8411 15 7 0.7207 -3.6785 3.0247 16 6 0.6744 -4.2513 4.2438 17 8 1.2035 -3.7074 5.1898 18 6 -0.0348 -5.5677 4.4314 19 6 0.0594 -5.9933 5.8980 20 6 -0.6503 -7.3095 6.0856 21 1 -1.1217 -7.7938 5.2432 22 6 -0.6977 -7.8954 7.3328 23 7 -1.3175 -9.0437 7.4967 24 14 0.1182 -7.0582 8.7897 25 1 -0.8567 -6.1541 9.4510 26 1 0.5761 -8.0861 9.7587 27 1 1.2841 -6.2687 8.3177 28 1 -0.3633 0.3661 0.9602 29 1 -0.3633 0.6484 -0.7972 30 1 -0.3633 -1.0148 -0.1629 31 1 1.5785 -0.3132 -2.1380 32 1 1.8131 -1.7941 -1.1728 33 1 3.7815 0.4911 -1.6060 34 1 3.9821 -1.2204 -2.0504 35 1 6.1355 -0.9666 -0.7916 36 1 7.2175 -1.4149 1.3688 37 1 5.8639 -1.5164 3.4257 38 1 3.4352 -1.1762 3.3147 39 1 1.7915 -2.7389 0.7469 40 1 0.2785 -1.8670 1.0911 41 1 0.9490 -1.6415 3.4677 42 1 2.4621 -2.5134 3.1235 43 1 0.2978 -4.1138 2.2679 44 1 -1.0826 -5.4591 4.1515 45 1 0.4326 -6.3251 3.8021 46 1 1.1071 -6.1019 6.1782 47 1 -0.4083 -5.2359 6.5268 48 1 -1.3512 -9.4558 8.3742 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343629607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:32 Heat of formation + Delta-G solvation = -34.968830 kcal Electronic energy + Delta-G solvation = -26200.175264 eV Core-core repulsion = 22639.457844 eV Total energy + Delta-G solvation = -3560.717420 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.189 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -41.89638 -40.61820 -38.41202 -36.43024 -35.52480 -34.62175 -33.31870 -32.72371 -31.06106 -30.12546 -28.52647 -27.69439 -24.93563 -24.00619 -23.15143 -22.95346 -22.74341 -21.24732 -19.90031 -19.18136 -18.09715 -17.56785 -17.41154 -16.97186 -16.78673 -16.32324 -16.11864 -15.90236 -15.46609 -15.10183 -15.07034 -14.84040 -14.69680 -14.44491 -14.25101 -13.93212 -13.79681 -13.41660 -13.22855 -13.21717 -13.01571 -12.89227 -12.64771 -12.31828 -12.14602 -12.07895 -11.97187 -11.88788 -11.76931 -11.63428 -11.48137 -11.40038 -10.81194 -10.78287 -10.25000 -10.09692 -9.61961 -8.89971 -8.31738 -6.34403 0.38773 0.43183 1.32844 1.34760 1.50096 1.68824 2.06977 2.34852 2.76759 2.91456 3.04001 3.71263 3.74133 3.78869 3.89597 3.96289 4.07273 4.08614 4.22347 4.31340 4.38201 4.39585 4.41413 4.47790 4.48750 4.51700 4.62214 4.71910 4.79257 4.84164 4.90792 4.97635 4.99498 5.01862 5.06035 5.16591 5.26979 5.30594 5.32659 5.41387 5.44810 5.46775 5.54664 5.61172 5.62878 5.86042 6.04577 6.23433 6.43547 6.57946 6.71998 7.30622 7.31290 8.83898 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.018956 B = 0.002622 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.732253 B =10676.595343 C =11556.990735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.083 3.917 3 H 0.086 0.914 4 C -0.148 4.148 5 C -0.077 4.077 6 C -0.126 4.126 7 C -0.111 4.111 8 C -0.138 4.138 9 C -0.124 4.124 10 C -0.143 4.143 11 C 0.097 3.903 12 N -0.502 5.502 13 C 0.054 3.946 14 C 0.115 3.885 15 N -0.717 5.717 16 C 0.514 3.486 17 O -0.587 6.587 18 C -0.115 4.115 19 C 0.004 3.996 20 C -0.528 4.528 21 H 0.052 0.948 22 C 0.014 3.986 23 N -0.943 5.943 24 Si 0.937 3.063 25 H -0.268 1.268 26 H -0.278 1.278 27 H -0.263 1.263 28 H 0.058 0.942 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.143 0.857 36 H 0.140 0.860 37 H 0.127 0.873 38 H 0.116 0.884 39 H 0.052 0.948 40 H 0.115 0.885 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.416 0.584 44 H 0.105 0.895 45 H 0.103 0.897 46 H 0.008 0.992 47 H 0.008 0.992 48 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.333 21.917 -24.638 34.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.024 4.024 3 H 0.104 0.896 4 C -0.187 4.187 5 C -0.114 4.114 6 C -0.129 4.129 7 C -0.129 4.129 8 C -0.156 4.156 9 C -0.142 4.142 10 C -0.162 4.162 11 C 0.001 3.999 12 N -0.220 5.220 13 C -0.072 4.072 14 C -0.009 4.009 15 N -0.371 5.371 16 C 0.302 3.698 17 O -0.467 6.467 18 C -0.155 4.155 19 C -0.034 4.034 20 C -0.566 4.566 21 H 0.070 0.930 22 C -0.184 4.184 23 N -0.584 5.584 24 Si 0.762 3.238 25 H -0.193 1.193 26 H -0.203 1.203 27 H -0.187 1.187 28 H 0.077 0.923 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.116 0.884 32 H 0.082 0.918 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.161 0.839 36 H 0.158 0.842 37 H 0.145 0.855 38 H 0.134 0.866 39 H 0.070 0.930 40 H 0.133 0.867 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.253 0.747 44 H 0.123 0.877 45 H 0.121 0.879 46 H 0.027 0.973 47 H 0.027 0.973 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.482 22.486 -23.471 34.153 hybrid contribution 0.331 -0.674 0.451 0.876 sum 10.814 21.812 -23.020 33.506 Atomic orbital electron populations 1.21995 0.92555 1.03028 1.03116 1.21864 0.96468 0.97709 0.86323 0.89589 1.22255 0.95587 1.01173 0.99680 1.20590 0.95252 1.03045 0.92514 1.20250 0.94635 1.02932 0.95099 1.21293 0.93811 0.99183 0.98641 1.21341 1.00847 1.00962 0.92447 1.21227 0.93626 0.99827 0.99561 1.21360 0.95256 1.02523 0.97088 1.18573 0.88925 0.99730 0.92656 1.58480 1.02061 1.20925 1.40513 1.22331 1.01281 0.89353 0.94206 1.21548 0.97161 0.84868 0.97292 1.45777 1.57333 1.23488 1.10478 1.21219 0.79098 0.87127 0.82318 1.90641 1.48065 1.65903 1.42043 1.21494 1.01860 0.92819 0.99340 1.19223 0.95997 0.94518 0.93613 1.21431 1.34373 1.05272 0.95540 0.93012 1.25790 0.95517 0.95284 1.01793 1.70016 1.44965 1.18813 1.24593 0.85846 0.79999 0.78595 0.79376 1.19337 1.20312 1.18733 0.92304 0.89829 0.91381 0.88381 0.91787 0.89484 0.89369 0.83920 0.84188 0.85472 0.86633 0.92969 0.86729 0.92423 0.92286 0.74709 0.87664 0.87916 0.97341 0.97343 0.92367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 8.31 71.98 0.60 -0.86 16 2 C 0.08 1.06 2.83 45.14 0.13 1.19 16 3 H 0.09 1.16 8.11 -2.38 -0.02 1.15 16 4 C -0.15 -1.45 5.32 30.74 0.16 -1.29 16 5 C -0.08 -0.85 5.81 29.90 0.17 -0.67 16 6 C -0.13 -2.16 5.74 -19.71 -0.11 -2.27 16 7 C -0.11 -1.76 9.63 22.31 0.21 -1.55 16 8 C -0.14 -2.40 10.05 22.24 0.22 -2.18 16 9 C -0.12 -2.62 10.03 22.18 0.22 -2.40 16 10 C -0.14 -3.37 8.14 22.50 0.18 -3.18 16 11 C 0.10 2.01 5.02 38.30 0.19 2.20 16 12 N -0.50 -9.11 4.36 -671.91 -2.93 -12.04 16 13 C 0.05 0.93 4.21 86.30 0.36 1.29 16 14 C 0.12 2.83 5.14 86.38 0.44 3.28 16 15 N -0.72 -18.32 5.56 -463.08 -2.57 -20.89 16 16 C 0.51 18.63 7.83 87.66 0.69 19.32 16 17 O -0.59 -26.76 15.98 -3.02 -0.05 -26.80 16 18 C -0.12 -4.38 5.64 29.85 0.17 -4.21 16 19 C 0.00 0.23 3.33 29.85 0.10 0.33 16 20 C -0.53 -30.72 9.66 25.60 0.25 -30.47 16 21 H 0.05 3.15 7.99 -2.91 -0.02 3.12 16 22 C 0.01 0.83 5.47 84.65 0.46 1.29 16 23 N -0.94 -59.42 13.96 21.45 0.30 -59.12 16 24 Si 0.94 47.39 27.47 68.60 1.88 49.27 16 25 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16 26 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 27 H -0.26 -13.30 6.54 99.48 0.65 -12.65 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.07 0.58 6.40 -2.38 -0.02 0.57 16 31 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.06 0.71 6.95 -2.39 -0.02 0.69 16 33 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 36 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 37 H 0.13 2.45 8.06 -2.91 -0.02 2.42 16 38 H 0.12 3.05 6.02 -2.91 -0.02 3.03 16 39 H 0.05 0.88 7.34 -2.39 -0.02 0.86 16 40 H 0.11 1.53 5.13 -2.38 -0.01 1.51 16 41 H 0.06 1.60 8.14 -2.38 -0.02 1.59 16 42 H 0.06 1.69 4.99 -2.39 -0.01 1.67 16 43 H 0.42 7.50 8.47 -92.71 -0.79 6.71 16 44 H 0.11 3.58 8.14 -2.39 -0.02 3.56 16 45 H 0.10 3.54 8.14 -2.39 -0.02 3.52 16 46 H 0.01 0.44 7.15 -2.39 -0.02 0.42 16 47 H 0.01 0.43 7.53 -2.39 -0.02 0.41 16 48 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -75.98 373.95 1.20 -74.78 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 0.11 Total: 15.00 kcal Atomic # 6 Polarization: -24.65 SS G_CDS: 4.46 Total: -20.19 kcal Atomic # 7 Polarization: -86.85 SS G_CDS: -5.21 Total: -92.06 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -0.05 Total: -26.80 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 1.88 Total: 49.27 kcal Total: -75.98 1.20 -74.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343629607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.808 kcal (2) G-P(sol) polarization free energy of solvation -75.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds