Wall clock time and date at job start Tue Mar 31 2020 13:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.45727 * 2 1 4 4 C 1.53037 * 109.46412 * 240.01883 * 2 1 3 5 5 C 1.53117 * 109.31419 * 299.14717 * 4 2 1 6 6 C 1.53124 * 109.15460 * 302.40247 * 5 4 2 7 7 C 1.53033 * 109.30987 * 57.59734 * 6 5 4 8 8 H 1.09000 * 109.45787 * 60.85199 * 7 6 5 9 9 C 1.53003 * 109.46214 * 180.82652 * 7 6 5 10 10 N 1.46846 * 109.52306 * 300.83734 * 7 6 5 11 11 N 1.36601 * 111.00134 * 185.84076 * 10 7 6 12 12 C 1.34779 * 120.00310 * 115.78973 * 11 10 7 13 13 O 1.21280 * 119.99621 * 0.02562 * 12 11 10 14 14 C 1.50697 * 120.00289 * 179.97438 * 12 11 10 15 15 H 1.08999 * 109.47658 * 300.00780 * 14 12 11 16 16 C 1.50708 * 109.46905 * 60.00437 * 14 12 11 17 17 H 1.07998 * 119.99797 * 35.02116 * 16 14 12 18 18 C 1.37870 * 120.00014 * 215.02524 * 16 14 12 19 19 N 1.31522 * 119.99985 * 6.37410 * 18 16 14 20 20 Si 1.86803 * 120.00181 * 186.38216 * 18 16 14 21 21 H 1.48501 * 109.47118 * 59.99010 * 20 18 16 22 22 H 1.48495 * 109.47222 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46960 * 299.99753 * 20 18 16 24 24 C 1.50700 * 109.47427 * 179.97438 * 14 12 11 25 25 C 1.38236 * 119.99898 * 293.90698 * 24 14 12 26 26 C 1.38237 * 119.99528 * 179.76394 * 25 24 14 27 27 C 1.38228 * 120.00160 * 0.50339 * 26 25 24 28 28 C 1.38234 * 120.00219 * 359.74411 * 27 26 25 29 29 C 1.38232 * 119.99889 * 114.16783 * 24 14 12 30 30 H 1.08999 * 109.46952 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47531 * 299.97500 * 1 2 3 32 32 H 1.08998 * 109.47031 * 59.98220 * 1 2 3 33 33 H 1.09008 * 109.50212 * 59.10822 * 4 2 1 34 34 H 1.09007 * 109.50207 * 179.18030 * 4 2 1 35 35 H 1.08992 * 109.52270 * 62.26859 * 5 4 2 36 36 H 1.08999 * 109.51877 * 182.46081 * 5 4 2 37 37 H 1.09005 * 109.47205 * 297.65493 * 6 5 4 38 38 H 1.09001 * 109.53565 * 177.57918 * 6 5 4 39 39 H 1.09000 * 109.47116 * 180.02562 * 9 7 6 40 40 H 1.09000 * 109.46921 * 300.05187 * 9 7 6 41 41 H 1.08994 * 109.47257 * 60.05353 * 9 7 6 42 42 H 0.97007 * 119.99896 * 295.79166 * 11 10 7 43 43 H 0.97001 * 119.99416 * 180.02562 * 19 18 16 44 44 H 1.07999 * 120.00145 * 359.97438 * 25 24 14 45 45 H 1.08004 * 119.99592 * 180.22553 * 26 25 24 46 46 H 1.07998 * 120.00369 * 179.72903 * 27 26 25 47 47 H 1.07998 * 120.00471 * 179.97438 * 28 27 26 48 48 H 1.08003 * 120.00187 * 0.02562 * 29 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0400 -0.7210 -1.2498 5 6 1.5451 -2.1700 -1.2359 6 6 2.0270 -2.8531 0.0470 7 6 1.5174 -2.0704 1.2592 8 1 0.4274 -2.0607 1.2532 9 6 2.0141 -2.7384 2.5430 10 7 2.0193 -0.6916 1.1994 11 7 1.6899 -0.0012 2.3312 12 6 2.6591 0.4438 3.1552 13 8 3.8238 0.2317 2.8916 14 6 2.2958 1.2060 4.4034 15 1 1.7465 2.1074 4.1319 16 6 1.4352 0.3407 5.2877 17 1 1.6078 -0.7244 5.3337 18 6 0.4275 0.9088 6.0378 19 7 0.1347 2.1823 5.8887 20 14 -0.5218 -0.1302 7.2662 21 1 0.4152 -0.6778 8.2799 22 1 -1.5437 0.7104 7.9402 23 1 -1.1910 -1.2492 6.5554 24 6 3.5522 1.5864 5.1435 25 6 4.3500 0.6048 5.7010 26 6 5.5051 0.9535 6.3756 27 6 5.8569 2.2844 6.5016 28 6 5.0564 3.2663 5.9485 29 6 3.9041 2.9173 5.2693 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5134 0.8901 32 1 -0.3633 0.5141 -0.8898 33 1 1.6638 -0.2166 -2.1399 34 1 3.1299 -0.7087 -1.2578 35 1 0.4558 -2.1832 -1.2679 36 1 1.9424 -2.6988 -2.1023 37 1 3.1167 -2.8750 0.0598 38 1 1.6421 -3.8723 0.0839 39 1 1.6508 -2.1812 3.4065 40 1 1.6416 -3.7618 2.5875 41 1 3.1040 -2.7478 2.5494 42 1 0.7583 0.1687 2.5418 43 1 -0.5740 2.5820 6.4167 44 1 4.0727 -0.4347 5.6066 45 1 6.1304 0.1864 6.8081 46 1 6.7570 2.5571 7.0324 47 1 5.3310 4.3061 6.0472 48 1 3.2783 3.6845 4.8377 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362650845.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:21 Heat of formation + Delta-G solvation = 6.869762 kcal Electronic energy + Delta-G solvation = -27920.496476 eV Core-core repulsion = 24361.593313 eV Total energy + Delta-G solvation = -3558.903163 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.15799 -38.63573 -37.29195 -34.29047 -33.61228 -33.03258 -31.09887 -30.20933 -29.92152 -28.03744 -26.73178 -26.42421 -23.96682 -22.76166 -21.63653 -21.54230 -20.71603 -19.21703 -18.85356 -16.90291 -16.77534 -15.89520 -15.80045 -15.47706 -14.89105 -14.53435 -14.25232 -14.01347 -13.92437 -13.62097 -13.36069 -13.03478 -12.77941 -12.53612 -12.41552 -12.36852 -12.24601 -11.84620 -11.65915 -11.64531 -11.48769 -11.40177 -11.05923 -11.02084 -10.76822 -10.55394 -10.40612 -10.37248 -10.25857 -10.22764 -9.96173 -9.44342 -8.76507 -8.53456 -8.33070 -8.21358 -7.92686 -7.60163 -6.29413 -4.34176 2.38599 2.41371 3.19102 3.25171 3.27802 3.42854 3.86624 4.28323 4.63171 4.82577 4.87125 4.91079 5.05426 5.11536 5.16776 5.29797 5.44505 5.52138 5.58451 5.60374 5.73680 5.76550 5.80925 5.90253 5.91845 5.93914 5.97588 6.05922 6.14997 6.17551 6.23150 6.29897 6.32537 6.33029 6.50600 6.54338 6.60962 6.68766 6.88550 6.98467 7.18974 7.26139 7.38477 7.45814 7.61953 7.75540 7.96519 8.06513 8.17282 8.40937 8.71305 9.30424 9.59831 10.79134 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.011785 B = 0.005103 C = 0.004215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.399626 B = 5486.024928 C = 6641.587166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.064 3.936 3 H 0.086 0.914 4 C -0.107 4.107 5 C -0.123 4.123 6 C -0.108 4.108 7 C 0.063 3.937 8 H 0.045 0.955 9 C -0.145 4.145 10 N -0.283 5.283 11 N -0.579 5.579 12 C 0.545 3.455 13 O -0.544 6.544 14 C 0.052 3.948 15 H 0.092 0.908 16 C -0.514 4.514 17 H 0.062 0.938 18 C 0.076 3.924 19 N -0.880 5.880 20 Si 0.895 3.105 21 H -0.273 1.273 22 H -0.286 1.286 23 H -0.275 1.275 24 C -0.011 4.011 25 C -0.083 4.083 26 C -0.134 4.134 27 C -0.148 4.148 28 C -0.132 4.132 29 C -0.120 4.120 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.051 0.949 41 H 0.062 0.938 42 H 0.385 0.615 43 H 0.267 0.733 44 H 0.111 0.889 45 H 0.106 0.894 46 H 0.105 0.895 47 H 0.106 0.894 48 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.482 -4.727 -9.605 10.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.045 4.045 3 H 0.104 0.896 4 C -0.146 4.146 5 C -0.160 4.160 6 C -0.146 4.146 7 C -0.045 4.045 8 H 0.063 0.937 9 C -0.202 4.202 10 N -0.100 5.100 11 N -0.325 5.325 12 C 0.334 3.666 13 O -0.419 6.419 14 C 0.030 3.970 15 H 0.109 0.891 16 C -0.552 4.552 17 H 0.080 0.920 18 C -0.129 4.129 19 N -0.516 5.516 20 Si 0.722 3.278 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.201 1.201 24 C -0.012 4.012 25 C -0.101 4.101 26 C -0.152 4.152 27 C -0.166 4.166 28 C -0.150 4.150 29 C -0.138 4.138 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.224 0.776 43 H 0.077 0.923 44 H 0.129 0.871 45 H 0.124 0.876 46 H 0.123 0.877 47 H 0.124 0.876 48 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.707 -4.724 -9.711 10.933 hybrid contribution -2.053 -0.385 0.877 2.265 sum -0.346 -5.109 -8.834 10.211 Atomic orbital electron populations 1.22489 0.97514 1.02288 1.02534 1.22182 0.92952 0.98961 0.90365 0.89600 1.21558 1.01743 0.95230 0.96042 1.21638 1.00625 0.95997 0.97787 1.21601 1.02006 0.97921 0.93106 1.22085 0.97277 0.88883 0.96285 0.93694 1.21798 1.02288 0.99099 0.97030 1.63003 1.54998 0.98311 0.93696 1.45444 1.09665 1.57321 1.20080 1.21560 0.84257 0.77552 0.83202 1.90567 1.19230 1.57617 1.74437 1.18109 0.91995 0.98151 0.88751 0.89058 1.20644 1.14706 0.93651 1.26180 0.91988 1.24942 0.96339 0.95094 0.96526 1.69870 1.30478 1.11440 1.39769 0.86594 0.79469 0.80100 0.81616 1.19836 1.21110 1.20053 1.20012 0.93978 0.92187 0.95005 1.20827 0.93608 0.99351 0.96323 1.20956 0.97667 0.95687 1.00920 1.20796 0.99892 0.93376 1.02574 1.20895 0.95938 0.98181 0.99996 1.20996 0.96375 0.96208 1.00244 0.91937 0.92213 0.91994 0.91521 0.90890 0.92071 0.91941 0.90890 0.91619 0.91272 0.92986 0.91858 0.77579 0.92267 0.87073 0.87602 0.87730 0.87569 0.87011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.32 8.29 37.16 0.31 -2.01 16 2 C 0.06 0.89 3.15 -67.72 -0.21 0.68 16 3 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 4 C -0.11 -1.23 5.61 -26.65 -0.15 -1.38 16 5 C -0.12 -1.28 5.70 -26.61 -0.15 -1.43 16 6 C -0.11 -1.30 5.37 -26.65 -0.14 -1.44 16 7 C 0.06 0.92 2.34 -67.72 -0.16 0.76 16 8 H 0.05 0.64 6.19 -51.93 -0.32 0.32 16 9 C -0.14 -2.32 8.99 37.16 0.33 -1.98 16 10 N -0.28 -4.73 4.20 -99.77 -0.42 -5.14 16 11 N -0.58 -10.99 3.47 31.22 0.11 -10.89 16 12 C 0.54 12.15 6.85 -10.99 -0.08 12.08 16 13 O -0.54 -13.48 15.74 5.56 0.09 -13.39 16 14 C 0.05 1.23 2.46 -94.07 -0.23 1.00 16 15 H 0.09 2.29 6.98 -51.93 -0.36 1.92 16 16 C -0.51 -12.61 7.46 -34.44 -0.26 -12.87 16 17 H 0.06 1.53 7.82 -52.49 -0.41 1.12 16 18 C 0.08 1.90 5.45 -17.82 -0.10 1.80 16 19 N -0.88 -22.88 12.77 55.43 0.71 -22.18 16 20 Si 0.90 19.82 29.54 -169.99 -5.02 14.80 16 21 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 22 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 24 C -0.01 -0.25 4.30 -104.62 -0.45 -0.70 16 25 C -0.08 -1.86 8.31 -39.58 -0.33 -2.19 16 26 C -0.13 -2.66 10.05 -39.59 -0.40 -3.06 16 27 C -0.15 -2.77 10.05 -39.59 -0.40 -3.16 16 28 C -0.13 -2.55 10.05 -39.58 -0.40 -2.95 16 29 C -0.12 -2.62 9.67 -39.58 -0.38 -3.00 16 30 H 0.06 0.73 4.80 -51.93 -0.25 0.48 16 31 H 0.06 0.80 6.97 -51.93 -0.36 0.44 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.65 8.14 -51.92 -0.42 0.22 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.61 6.56 -51.93 -0.34 0.27 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.07 1.28 7.33 -51.93 -0.38 0.90 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.39 7.17 7.40 -185.15 -1.37 5.80 16 43 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 44 H 0.11 2.53 7.89 -52.49 -0.41 2.12 16 45 H 0.11 1.80 8.06 -52.48 -0.42 1.38 16 46 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 47 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 48 H 0.11 2.35 7.96 -52.48 -0.42 1.93 16 LS Contribution 376.77 15.07 5.68 5.68 Total: -1.00 -28.05 376.77 -10.88 -38.93 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: -8.84 Total: 12.05 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: -3.19 Total: -19.86 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: 0.40 Total: -38.21 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: 0.09 Total: -13.39 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -28.05 -10.88 -38.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362650845.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.804 kcal (2) G-P(sol) polarization free energy of solvation -28.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds