Wall clock time and date at job start Tue Mar 31 2020 13:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.45727 * 2 1 4 4 C 1.53037 * 109.46412 * 240.01883 * 2 1 3 5 5 C 1.53117 * 109.31419 * 299.14717 * 4 2 1 6 6 C 1.53124 * 109.15460 * 302.40247 * 5 4 2 7 7 C 1.53033 * 109.30987 * 57.59734 * 6 5 4 8 8 H 1.09000 * 109.45787 * 60.85199 * 7 6 5 9 9 C 1.53003 * 109.46214 * 180.82652 * 7 6 5 10 10 N 1.46846 * 109.52306 * 300.83734 * 7 6 5 11 11 N 1.36601 * 111.00134 * 185.84076 * 10 7 6 12 12 C 1.34779 * 120.00310 * 115.78973 * 11 10 7 13 13 O 1.21280 * 119.99621 * 0.02562 * 12 11 10 14 14 C 1.50697 * 120.00289 * 179.97438 * 12 11 10 15 15 H 1.08999 * 109.47658 * 300.00780 * 14 12 11 16 16 C 1.50708 * 109.46905 * 60.00437 * 14 12 11 17 17 H 1.07998 * 119.99797 * 35.02116 * 16 14 12 18 18 C 1.37870 * 120.00014 * 215.02524 * 16 14 12 19 19 N 1.31522 * 119.99985 * 6.37410 * 18 16 14 20 20 Si 1.86803 * 120.00181 * 186.38216 * 18 16 14 21 21 H 1.48501 * 109.47118 * 59.99010 * 20 18 16 22 22 H 1.48495 * 109.47222 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46960 * 299.99753 * 20 18 16 24 24 C 1.50700 * 109.47427 * 179.97438 * 14 12 11 25 25 C 1.38236 * 119.99898 * 293.90698 * 24 14 12 26 26 C 1.38237 * 119.99528 * 179.76394 * 25 24 14 27 27 C 1.38228 * 120.00160 * 0.50339 * 26 25 24 28 28 C 1.38234 * 120.00219 * 359.74411 * 27 26 25 29 29 C 1.38232 * 119.99889 * 114.16783 * 24 14 12 30 30 H 1.08999 * 109.46952 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47531 * 299.97500 * 1 2 3 32 32 H 1.08998 * 109.47031 * 59.98220 * 1 2 3 33 33 H 1.09008 * 109.50212 * 59.10822 * 4 2 1 34 34 H 1.09007 * 109.50207 * 179.18030 * 4 2 1 35 35 H 1.08992 * 109.52270 * 62.26859 * 5 4 2 36 36 H 1.08999 * 109.51877 * 182.46081 * 5 4 2 37 37 H 1.09005 * 109.47205 * 297.65493 * 6 5 4 38 38 H 1.09001 * 109.53565 * 177.57918 * 6 5 4 39 39 H 1.09000 * 109.47116 * 180.02562 * 9 7 6 40 40 H 1.09000 * 109.46921 * 300.05187 * 9 7 6 41 41 H 1.08994 * 109.47257 * 60.05353 * 9 7 6 42 42 H 0.97007 * 119.99896 * 295.79166 * 11 10 7 43 43 H 0.97001 * 119.99416 * 180.02562 * 19 18 16 44 44 H 1.07999 * 120.00145 * 359.97438 * 25 24 14 45 45 H 1.08004 * 119.99592 * 180.22553 * 26 25 24 46 46 H 1.07998 * 120.00369 * 179.72903 * 27 26 25 47 47 H 1.07998 * 120.00471 * 179.97438 * 28 27 26 48 48 H 1.08003 * 120.00187 * 0.02562 * 29 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0400 -0.7210 -1.2498 5 6 1.5451 -2.1700 -1.2359 6 6 2.0270 -2.8531 0.0470 7 6 1.5174 -2.0704 1.2592 8 1 0.4274 -2.0607 1.2532 9 6 2.0141 -2.7384 2.5430 10 7 2.0193 -0.6916 1.1994 11 7 1.6899 -0.0012 2.3312 12 6 2.6591 0.4438 3.1552 13 8 3.8238 0.2317 2.8916 14 6 2.2958 1.2060 4.4034 15 1 1.7465 2.1074 4.1319 16 6 1.4352 0.3407 5.2877 17 1 1.6078 -0.7244 5.3337 18 6 0.4275 0.9088 6.0378 19 7 0.1347 2.1823 5.8887 20 14 -0.5218 -0.1302 7.2662 21 1 0.4152 -0.6778 8.2799 22 1 -1.5437 0.7104 7.9402 23 1 -1.1910 -1.2492 6.5554 24 6 3.5522 1.5864 5.1435 25 6 4.3500 0.6048 5.7010 26 6 5.5051 0.9535 6.3756 27 6 5.8569 2.2844 6.5016 28 6 5.0564 3.2663 5.9485 29 6 3.9041 2.9173 5.2693 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5134 0.8901 32 1 -0.3633 0.5141 -0.8898 33 1 1.6638 -0.2166 -2.1399 34 1 3.1299 -0.7087 -1.2578 35 1 0.4558 -2.1832 -1.2679 36 1 1.9424 -2.6988 -2.1023 37 1 3.1167 -2.8750 0.0598 38 1 1.6421 -3.8723 0.0839 39 1 1.6508 -2.1812 3.4065 40 1 1.6416 -3.7618 2.5875 41 1 3.1040 -2.7478 2.5494 42 1 0.7583 0.1687 2.5418 43 1 -0.5740 2.5820 6.4167 44 1 4.0727 -0.4347 5.6066 45 1 6.1304 0.1864 6.8081 46 1 6.7570 2.5571 7.0324 47 1 5.3310 4.3061 6.0472 48 1 3.2783 3.6845 4.8377 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362650845.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:20 Heat of formation + Delta-G solvation = -6.788859 kcal Electronic energy + Delta-G solvation = -27921.088758 eV Core-core repulsion = 24361.593313 eV Total energy + Delta-G solvation = -3559.495445 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.51716 -40.21479 -38.88975 -35.64836 -35.48503 -34.17415 -32.90206 -31.53895 -31.49082 -29.49197 -28.27804 -27.49840 -25.78657 -23.92192 -23.21723 -22.82948 -22.19599 -20.90772 -20.01895 -18.66591 -18.25216 -17.61813 -17.37876 -16.72616 -16.34995 -16.00212 -15.73521 -15.60027 -15.31287 -14.89918 -14.63187 -14.41017 -14.33138 -14.02900 -13.98055 -13.61238 -13.43520 -13.33717 -13.29265 -13.02314 -12.86086 -12.77949 -12.70582 -12.54678 -12.17799 -11.97300 -11.87812 -11.67558 -11.51691 -11.43199 -11.28764 -11.23900 -10.70108 -10.32826 -9.91077 -9.56338 -9.52228 -9.26525 -8.23022 -6.32557 0.75082 0.79391 1.40034 1.43459 1.49229 1.97891 2.09830 2.42382 3.06633 3.24026 3.45376 3.84323 3.90176 3.96915 4.10565 4.21344 4.23813 4.30153 4.36503 4.40868 4.45523 4.50121 4.54798 4.57197 4.58940 4.73355 4.81644 4.87668 4.94781 4.96672 5.01517 5.04480 5.09898 5.12481 5.18365 5.24015 5.30668 5.32585 5.36425 5.44970 5.55060 5.64467 5.78272 5.82301 5.93456 6.07592 6.23153 6.39802 6.56438 6.68777 6.81643 7.33639 7.92273 8.85267 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.011785 B = 0.005103 C = 0.004215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.399626 B = 5486.024928 C = 6641.587166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.059 3.941 3 H 0.064 0.936 4 C -0.102 4.102 5 C -0.117 4.117 6 C -0.103 4.103 7 C 0.062 3.938 8 H 0.054 0.946 9 C -0.140 4.140 10 N -0.305 5.305 11 N -0.569 5.569 12 C 0.547 3.453 13 O -0.574 6.574 14 C 0.056 3.944 15 H 0.068 0.932 16 C -0.513 4.513 17 H 0.052 0.948 18 C 0.037 3.963 19 N -0.906 5.906 20 Si 0.949 3.051 21 H -0.278 1.278 22 H -0.282 1.282 23 H -0.265 1.265 24 C -0.039 4.039 25 C -0.108 4.108 26 C -0.135 4.135 27 C -0.142 4.142 28 C -0.129 4.129 29 C -0.144 4.144 30 H 0.073 0.927 31 H 0.040 0.960 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.058 0.942 38 H 0.089 0.911 39 H 0.036 0.964 40 H 0.079 0.921 41 H 0.040 0.960 42 H 0.384 0.616 43 H 0.268 0.732 44 H 0.094 0.906 45 H 0.135 0.865 46 H 0.148 0.852 47 H 0.141 0.859 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.567 -5.654 -10.335 11.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.049 4.049 3 H 0.083 0.917 4 C -0.141 4.141 5 C -0.154 4.154 6 C -0.142 4.142 7 C -0.046 4.046 8 H 0.072 0.928 9 C -0.197 4.197 10 N -0.122 5.122 11 N -0.312 5.312 12 C 0.336 3.664 13 O -0.452 6.452 14 C 0.034 3.966 15 H 0.086 0.914 16 C -0.551 4.551 17 H 0.070 0.930 18 C -0.165 4.165 19 N -0.543 5.543 20 Si 0.774 3.226 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.190 1.190 24 C -0.040 4.040 25 C -0.126 4.126 26 C -0.153 4.153 27 C -0.160 4.160 28 C -0.146 4.146 29 C -0.162 4.162 30 H 0.091 0.909 31 H 0.059 0.941 32 H 0.102 0.898 33 H 0.110 0.890 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.077 0.923 38 H 0.107 0.893 39 H 0.055 0.945 40 H 0.098 0.902 41 H 0.059 0.941 42 H 0.224 0.776 43 H 0.077 0.923 44 H 0.112 0.888 45 H 0.153 0.847 46 H 0.165 0.835 47 H 0.158 0.842 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.761 -5.661 -10.463 12.026 hybrid contribution -2.003 -0.084 1.069 2.272 sum -0.242 -5.745 -9.394 11.014 Atomic orbital electron populations 1.22412 0.95875 1.02995 1.02697 1.22273 0.94316 0.98068 0.90223 0.91732 1.21566 1.00904 0.96271 0.95363 1.21634 1.01426 0.94831 0.97527 1.21606 1.01160 0.98855 0.92569 1.22191 0.97767 0.87731 0.96913 0.92773 1.21753 1.00761 1.00477 0.96729 1.63065 1.56334 0.99380 0.93418 1.45192 1.08807 1.56603 1.20573 1.21307 0.84248 0.77481 0.83316 1.90525 1.20351 1.59111 1.75212 1.17978 0.92198 0.97072 0.89385 0.91444 1.20680 1.14878 0.93229 1.26296 0.92956 1.25539 0.97133 0.95983 0.97831 1.69971 1.31107 1.12618 1.40618 0.85748 0.78253 0.79004 0.79565 1.20337 1.20752 1.19027 1.20101 0.94498 0.93321 0.96105 1.20837 0.95289 0.98375 0.98142 1.21326 0.96706 0.97428 0.99810 1.21276 1.00790 0.92424 1.01490 1.21301 0.94601 1.00331 0.98407 1.21148 0.97910 0.95525 1.01638 0.90854 0.94125 0.89758 0.88976 0.92336 0.90741 0.89622 0.92327 0.89254 0.94483 0.90192 0.94056 0.77642 0.92319 0.88789 0.84687 0.83462 0.84161 0.87513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.22 8.29 71.98 0.60 -3.62 16 2 C 0.06 1.64 3.15 44.94 0.14 1.78 16 3 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 4 C -0.10 -2.17 5.61 30.65 0.17 -2.00 16 5 C -0.12 -2.07 5.70 30.67 0.17 -1.89 16 6 C -0.10 -2.28 5.37 30.65 0.16 -2.12 16 7 C 0.06 1.78 2.34 44.94 0.11 1.89 16 8 H 0.05 1.47 6.19 -2.39 -0.01 1.46 16 9 C -0.14 -4.56 8.99 71.98 0.65 -3.91 16 10 N -0.30 -10.41 4.20 -469.58 -1.97 -12.38 16 11 N -0.57 -22.79 3.47 -173.53 -0.60 -23.39 16 12 C 0.55 25.99 6.85 87.66 0.60 26.59 16 13 O -0.57 -30.12 15.74 -3.03 -0.05 -30.16 16 14 C 0.06 2.82 2.46 -13.03 -0.03 2.79 16 15 H 0.07 3.64 6.98 -2.39 -0.02 3.62 16 16 C -0.51 -26.42 7.46 25.60 0.19 -26.23 16 17 H 0.05 2.74 7.82 -2.91 -0.02 2.71 16 18 C 0.04 1.91 5.45 84.65 0.46 2.37 16 19 N -0.91 -48.70 12.77 21.45 0.27 -48.42 16 20 Si 0.95 41.32 29.54 68.60 2.03 43.34 16 21 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 22 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 23 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 24 C -0.04 -1.91 4.30 -19.87 -0.09 -2.00 16 25 C -0.11 -5.02 8.31 22.27 0.19 -4.84 16 26 C -0.13 -5.20 10.05 22.27 0.22 -4.98 16 27 C -0.14 -4.94 10.05 22.27 0.22 -4.71 16 28 C -0.13 -4.79 10.05 22.27 0.22 -4.56 16 29 C -0.14 -6.45 9.67 22.27 0.22 -6.23 16 30 H 0.07 1.55 4.80 -2.39 -0.01 1.54 16 31 H 0.04 1.09 6.97 -2.39 -0.02 1.07 16 32 H 0.08 1.58 8.14 -2.39 -0.02 1.57 16 33 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 34 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 35 H 0.07 1.17 6.56 -2.39 -0.02 1.15 16 36 H 0.09 1.19 8.14 -2.39 -0.02 1.18 16 37 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 38 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.04 1.42 7.33 -2.39 -0.02 1.40 16 40 H 0.08 2.09 8.14 -2.39 -0.02 2.08 16 41 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.38 15.18 7.40 -215.49 -1.59 13.58 16 43 H 0.27 13.75 8.31 -92.71 -0.77 12.98 16 44 H 0.09 4.55 7.89 -2.91 -0.02 4.52 16 45 H 0.14 4.31 8.06 -2.91 -0.02 4.29 16 46 H 0.15 3.87 8.06 -2.91 -0.02 3.85 16 47 H 0.14 4.19 8.06 -2.91 -0.02 4.16 16 48 H 0.11 4.73 7.96 -2.91 -0.02 4.70 16 Total: -1.00 -63.90 376.77 3.24 -60.67 By element: Atomic # 1 Polarization: 42.67 SS G_CDS: -0.65 Total: 42.02 kcal Atomic # 6 Polarization: -35.88 SS G_CDS: 4.21 Total: -31.67 kcal Atomic # 7 Polarization: -81.89 SS G_CDS: -2.30 Total: -84.19 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: -0.05 Total: -30.16 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.34 kcal Total: -63.90 3.24 -60.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362650845.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.879 kcal (2) G-P(sol) polarization free energy of solvation -63.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds