Wall clock time and date at job start Tue Mar 31 2020 11:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47342 * 2 1 4 4 C 1.50706 * 109.47021 * 119.99844 * 2 1 3 5 5 O 1.21281 * 120.00057 * 120.00175 * 4 2 1 6 6 N 1.34772 * 119.99756 * 299.99958 * 4 2 1 7 7 C 1.46494 * 120.00140 * 0.02562 * 6 4 2 8 8 C 1.46503 * 119.99546 * 180.02562 * 6 4 2 9 9 C 1.50696 * 109.47376 * 89.99847 * 8 6 4 10 10 H 1.07999 * 120.00075 * 0.02562 * 9 8 6 11 11 C 1.37873 * 120.00192 * 179.97438 * 9 8 6 12 12 N 1.31517 * 120.00227 * 180.02562 * 11 9 8 13 13 Si 1.86806 * 119.99867 * 0.02562 * 11 9 8 14 14 H 1.48496 * 109.47217 * 89.99792 * 13 11 9 15 15 H 1.48504 * 109.47234 * 209.99750 * 13 11 9 16 16 H 1.48498 * 109.46849 * 329.99609 * 13 11 9 17 17 N 1.46905 * 109.47351 * 239.99651 * 2 1 3 18 18 C 1.47957 * 111.00038 * 159.35924 * 17 2 1 19 19 C 1.53939 * 86.18061 * 222.41908 * 18 17 2 20 20 H 1.08998 * 113.73331 * 138.07907 * 19 18 17 21 21 C 1.53001 * 113.82986 * 269.35058 * 19 18 17 22 22 C 1.47960 * 110.99673 * 59.99963 * 17 2 1 23 23 H 1.09002 * 113.76002 * 23.26871 * 22 17 2 24 24 C 1.50699 * 113.85907 * 251.91541 * 22 17 2 25 25 C 1.38233 * 120.00012 * 341.13588 * 24 22 17 26 26 C 1.38242 * 120.00002 * 179.81129 * 25 24 22 27 27 C 1.38231 * 119.99736 * 0.42073 * 26 25 24 28 28 C 1.38238 * 120.00168 * 359.81220 * 27 26 25 29 29 C 1.38227 * 119.99849 * 0.02562 * 28 27 26 30 30 H 1.09002 * 109.46776 * 60.00187 * 1 2 3 31 31 H 1.09002 * 109.47342 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47064 * 300.00167 * 1 2 3 33 33 H 1.08994 * 109.47572 * 90.00013 * 7 6 4 34 34 H 1.09004 * 109.46876 * 210.00261 * 7 6 4 35 35 H 1.08995 * 109.47275 * 329.99737 * 7 6 4 36 36 H 1.09005 * 109.46443 * 209.99777 * 8 6 4 37 37 H 1.08994 * 109.47405 * 329.99525 * 8 6 4 38 38 H 0.97003 * 119.99872 * 180.02562 * 12 11 9 39 39 H 1.09003 * 113.75785 * 108.10613 * 18 17 2 40 40 H 1.08998 * 113.86180 * 336.75186 * 18 17 2 41 41 H 1.09002 * 109.47136 * 156.77106 * 21 19 18 42 42 H 1.08999 * 109.47337 * 276.77682 * 21 19 18 43 43 H 1.09004 * 109.47020 * 36.77891 * 21 19 18 44 44 H 1.08002 * 119.99856 * 359.97438 * 25 24 22 45 45 H 1.07998 * 120.00170 * 180.21162 * 26 25 24 46 46 H 1.08000 * 119.99773 * 179.78731 * 27 26 25 47 47 H 1.08005 * 119.99828 * 179.97438 * 28 27 26 48 48 H 1.07998 * 119.99845 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1193 6 7 1.7067 -0.2499 2.4546 7 6 0.8640 0.9409 2.5889 8 6 2.1955 -0.9402 3.6507 9 6 3.5229 -0.3562 4.0606 10 1 3.9586 0.4490 3.4877 11 6 4.1805 -0.8490 5.1677 12 7 5.3387 -0.3390 5.5257 13 14 3.4265 -2.2412 6.1591 14 1 3.8873 -3.5433 5.6138 15 1 3.8467 -2.1223 7.5784 16 1 1.9460 -2.1646 6.0732 17 7 2.0197 -0.6926 -1.1994 18 6 3.4152 -0.3054 -1.5026 19 6 2.9685 -0.2400 -2.9743 20 1 3.3673 0.6176 -3.5161 21 6 3.1425 -1.5576 -3.7323 22 6 1.5453 -0.0217 -2.4299 23 1 1.2862 1.0273 -2.2861 24 6 0.4856 -0.7922 -3.1744 25 6 0.3192 -2.1439 -2.9376 26 6 -0.6556 -2.8499 -3.6177 27 6 -1.4580 -2.2060 -4.5409 28 6 -1.2884 -0.8553 -4.7812 29 6 -0.3160 -0.1487 -4.0987 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.1838 0.6427 2.6224 34 1 1.1218 1.4665 3.5084 35 1 1.0272 1.5996 1.7360 36 1 1.4775 -0.8149 4.4613 37 1 2.3169 -2.0014 3.4338 38 1 5.8015 -0.6860 6.3044 39 1 4.1430 -1.0910 -1.2992 40 1 3.7048 0.6602 -1.0882 41 1 2.4627 -1.5793 -4.5841 42 1 4.1703 -1.6407 -4.0855 43 1 2.9183 -2.3917 -3.0673 44 1 0.9489 -2.6478 -2.2193 45 1 -0.7879 -3.9052 -3.4302 46 1 -2.2172 -2.7583 -5.0747 47 1 -1.9151 -0.3523 -5.5028 48 1 -0.1832 0.9065 -4.2867 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081574443.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:46 Heat of formation + Delta-G solvation = 41.265937 kcal Electronic energy + Delta-G solvation = -27356.005822 eV Core-core repulsion = 23798.594189 eV Total energy + Delta-G solvation = -3557.411633 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.04720 -39.07805 -38.18173 -34.89912 -33.58310 -32.36460 -31.44864 -30.90223 -29.64009 -28.13209 -26.38307 -25.85210 -24.97377 -23.53839 -22.51539 -21.71211 -21.29239 -18.82307 -18.59656 -17.08880 -16.91495 -16.47009 -16.21054 -15.38668 -15.09224 -15.02953 -14.67483 -14.50172 -14.04688 -13.81364 -13.49404 -13.35102 -13.16171 -12.99782 -12.55511 -12.53143 -12.38803 -12.29283 -12.22621 -11.84319 -11.78602 -11.61422 -11.29355 -11.19859 -11.03929 -11.02325 -10.84390 -10.51187 -10.47320 -10.44773 -10.12746 -9.53598 -9.03389 -8.93395 -8.72492 -8.58385 -8.48919 -7.65911 -6.08438 -4.07008 1.28461 1.39751 3.29866 3.35777 3.37971 3.40949 3.53492 3.77047 4.12641 4.39836 4.40556 4.67621 4.82737 4.87116 4.93359 4.98031 5.05328 5.14062 5.15689 5.20920 5.26703 5.34927 5.40853 5.46535 5.54965 5.63513 5.70552 5.75324 5.80738 5.81968 5.87612 5.95212 5.99474 6.03513 6.07719 6.10799 6.25494 6.33771 6.41268 6.42365 6.53531 6.69177 6.71168 6.94992 6.98841 7.10291 7.38117 7.62135 8.29046 8.47960 8.93664 9.05844 9.52291 11.04996 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.021105 B = 0.003314 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.388209 B = 8447.016205 C = 8729.186361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.031 3.969 3 H 0.067 0.933 4 C 0.516 3.484 5 O -0.521 6.521 6 N -0.600 5.600 7 C 0.083 3.917 8 C 0.217 3.783 9 C -0.528 4.528 10 H 0.073 0.927 11 C 0.072 3.928 12 N -0.898 5.898 13 Si 0.877 3.123 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.266 1.266 17 N -0.441 5.441 18 C 0.014 3.986 19 C -0.107 4.107 20 H 0.079 0.921 21 C -0.128 4.128 22 C 0.068 3.932 23 H 0.084 0.916 24 C -0.058 4.058 25 C -0.085 4.085 26 C -0.127 4.127 27 C -0.126 4.126 28 C -0.127 4.127 29 C -0.118 4.118 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.048 0.952 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.029 0.971 37 H 0.036 0.964 38 H 0.264 0.736 39 H 0.097 0.903 40 H 0.069 0.931 41 H 0.056 0.944 42 H 0.054 0.946 43 H 0.069 0.931 44 H 0.136 0.864 45 H 0.118 0.882 46 H 0.116 0.884 47 H 0.117 0.883 48 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.338 2.361 -20.265 24.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.081 4.081 3 H 0.085 0.915 4 C 0.301 3.699 5 O -0.396 6.396 6 N -0.333 5.333 7 C -0.061 4.061 8 C 0.097 3.903 9 C -0.566 4.566 10 H 0.091 0.909 11 C -0.130 4.130 12 N -0.537 5.537 13 Si 0.704 3.296 14 H -0.199 1.199 15 H -0.211 1.211 16 H -0.191 1.191 17 N -0.164 5.164 18 C -0.115 4.115 19 C -0.126 4.126 20 H 0.097 0.903 21 C -0.186 4.186 22 C -0.041 4.041 23 H 0.102 0.898 24 C -0.058 4.058 25 C -0.104 4.104 26 C -0.145 4.145 27 C -0.144 4.144 28 C -0.145 4.145 29 C -0.137 4.137 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.066 0.934 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.047 0.953 37 H 0.054 0.946 38 H 0.074 0.926 39 H 0.116 0.884 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.154 0.846 45 H 0.136 0.864 46 H 0.134 0.866 47 H 0.135 0.865 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.978 1.126 -19.998 23.866 hybrid contribution -0.157 0.439 0.728 0.864 sum -13.134 1.565 -19.270 23.373 Atomic orbital electron populations 1.22031 0.92594 1.03507 1.02752 1.22192 0.97232 0.96614 0.92077 0.91525 1.19998 0.80942 0.85162 0.83752 1.90661 1.36875 1.26139 1.85956 1.47791 1.50333 1.28469 1.06698 1.21787 0.93595 0.88046 1.02700 1.19632 0.95190 0.93719 0.81781 1.21325 1.03154 1.20198 1.11928 0.90905 1.24858 0.94640 0.96475 0.97059 1.69901 1.14833 1.42366 1.26604 0.86841 0.80041 0.83294 0.79458 1.19881 1.21092 1.19075 1.68392 1.04052 1.45318 0.98638 1.23936 0.92684 1.01134 0.93718 1.22845 0.94146 0.99480 0.96162 0.90309 1.21568 1.01000 0.96252 0.99737 1.22419 0.93592 0.96294 0.91824 0.89819 1.19416 0.95724 0.94184 0.96505 1.21227 0.97042 0.93766 0.98323 1.21212 0.96268 0.99965 0.97014 1.21112 0.99705 0.94849 0.98707 1.21012 0.98642 0.94538 1.00270 1.20930 0.95964 0.99658 0.97125 0.92140 0.91534 0.90531 0.93392 0.90709 0.92281 0.95339 0.94582 0.92583 0.88416 0.91313 0.92499 0.92712 0.91195 0.84589 0.86356 0.86624 0.86513 0.86539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 8.61 37.16 0.32 -1.60 16 2 C 0.03 0.47 1.33 -68.86 -0.09 0.38 16 3 H 0.07 0.94 6.88 -51.93 -0.36 0.59 16 4 C 0.52 10.67 6.99 -10.98 -0.08 10.60 16 5 O -0.52 -13.03 15.67 5.56 0.09 -12.94 16 6 N -0.60 -12.49 2.86 -182.96 -0.52 -13.01 16 7 C 0.08 1.28 8.80 59.84 0.53 1.80 16 8 C 0.22 5.40 4.23 -5.19 -0.02 5.37 16 9 C -0.53 -15.29 9.94 -34.44 -0.34 -15.63 16 10 H 0.07 2.31 8.06 -52.49 -0.42 1.89 16 11 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 12 N -0.90 -27.88 13.96 55.43 0.77 -27.10 16 13 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 14 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 17 N -0.44 -6.36 4.14 -225.16 -0.93 -7.29 16 18 C 0.01 0.19 6.96 -2.77 -0.02 0.17 16 19 C -0.11 -1.18 4.52 -89.68 -0.41 -1.59 16 20 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 21 C -0.13 -1.39 8.22 37.16 0.31 -1.08 16 22 C 0.07 0.77 2.35 -67.81 -0.16 0.61 16 23 H 0.08 0.86 7.66 -51.93 -0.40 0.46 16 24 C -0.06 -0.64 3.83 -104.62 -0.40 -1.04 16 25 C -0.09 -1.02 7.88 -39.58 -0.31 -1.33 16 26 C -0.13 -1.33 10.05 -39.58 -0.40 -1.73 16 27 C -0.13 -1.18 10.05 -39.58 -0.40 -1.58 16 28 C -0.13 -1.15 10.05 -39.59 -0.40 -1.55 16 29 C -0.12 -1.14 9.74 -39.59 -0.39 -1.53 16 30 H 0.06 0.66 6.77 -51.93 -0.35 0.31 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.08 0.89 4.53 -51.93 -0.24 0.65 16 33 H 0.05 0.62 6.95 -51.93 -0.36 0.26 16 34 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 35 H 0.06 0.77 6.01 -51.93 -0.31 0.45 16 36 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 37 H 0.04 0.96 6.85 -51.93 -0.36 0.61 16 38 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 39 H 0.10 1.55 8.10 -51.93 -0.42 1.13 16 40 H 0.07 0.94 7.62 -51.93 -0.40 0.55 16 41 H 0.06 0.59 7.36 -51.93 -0.38 0.21 16 42 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.87 6.88 -51.93 -0.36 0.51 16 44 H 0.14 1.87 6.77 -52.49 -0.36 1.51 16 45 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 46 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 47 H 0.12 0.82 8.06 -52.48 -0.42 0.39 16 48 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 LS Contribution 374.46 15.07 5.64 5.64 Total: -1.00 -34.06 374.46 -9.59 -43.66 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -7.62 Total: 1.59 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -2.35 Total: -7.69 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: -0.68 Total: -47.41 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.09 Total: -12.94 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.06 -9.59 -43.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081574443.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.924 kcal (2) G-P(sol) polarization free energy of solvation -34.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds