Wall clock time and date at job start Tue Mar 31 2020 11:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47370 * 2 1 4 4 C 1.50696 * 109.47620 * 119.99956 * 2 1 3 5 5 O 1.21293 * 119.99604 * 92.88501 * 4 2 1 6 6 N 1.34769 * 120.00560 * 272.88846 * 4 2 1 7 7 C 1.46502 * 120.00570 * 183.63642 * 6 4 2 8 8 C 1.46506 * 119.99760 * 3.63487 * 6 4 2 9 9 C 1.50699 * 109.47301 * 92.59693 * 8 6 4 10 10 H 1.08006 * 119.99791 * 0.02562 * 9 8 6 11 11 C 1.37870 * 120.00072 * 179.97438 * 9 8 6 12 12 N 1.31515 * 119.99977 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99826 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47089 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47080 * 240.00149 * 13 11 9 16 16 H 1.48504 * 109.46868 * 120.00451 * 13 11 9 17 17 N 1.46901 * 109.46940 * 240.00510 * 2 1 3 18 18 C 1.47478 * 111.00102 * 155.97046 * 17 2 1 19 19 C 1.53520 * 87.93101 * 221.29228 * 18 17 2 20 20 H 1.08996 * 114.16786 * 272.37477 * 19 18 17 21 21 C 1.52999 * 114.16922 * 139.66790 * 19 18 17 22 22 C 1.47475 * 111.00440 * 59.99609 * 17 2 1 23 23 H 1.09003 * 113.47461 * 23.87566 * 22 17 2 24 24 C 1.50708 * 113.47630 * 253.47545 * 22 17 2 25 25 C 1.38235 * 119.99538 * 339.22467 * 24 22 17 26 26 C 1.38238 * 119.99129 * 179.81256 * 25 24 22 27 27 C 1.38230 * 120.00439 * 0.42138 * 26 25 24 28 28 C 1.38241 * 119.99898 * 359.80973 * 27 26 25 29 29 C 1.38227 * 119.99981 * 0.02562 * 28 27 26 30 30 H 1.09001 * 109.46856 * 296.15323 * 1 2 3 31 31 H 1.09002 * 109.47762 * 56.15654 * 1 2 3 32 32 H 1.09006 * 109.46887 * 176.16409 * 1 2 3 33 33 H 1.08997 * 109.47057 * 275.09543 * 7 6 4 34 34 H 1.09005 * 109.46830 * 35.09514 * 7 6 4 35 35 H 1.09001 * 109.47147 * 155.09558 * 7 6 4 36 36 H 1.09004 * 109.46860 * 332.59837 * 8 6 4 37 37 H 1.09003 * 109.46966 * 212.60033 * 8 6 4 38 38 H 0.96999 * 120.00335 * 359.97438 * 12 11 9 39 39 H 1.08999 * 113.47509 * 336.06179 * 18 17 2 40 40 H 1.09003 * 113.47715 * 106.52947 * 18 17 2 41 41 H 1.08997 * 109.47103 * 326.16554 * 21 19 18 42 42 H 1.09006 * 109.46966 * 86.16124 * 21 19 18 43 43 H 1.08996 * 109.47191 * 206.16354 * 21 19 18 44 44 H 1.07988 * 120.00286 * 0.02562 * 25 24 22 45 45 H 1.08007 * 119.99310 * 180.21091 * 26 25 24 46 46 H 1.08002 * 120.00360 * 179.79005 * 27 26 25 47 47 H 1.08002 * 119.99738 * 179.97438 * 28 27 26 48 48 H 1.08004 * 120.00433 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.2844 -1.8960 1.1857 6 7 2.2017 -0.0284 2.3804 7 6 2.7651 -0.7000 3.5543 8 6 1.8222 1.3846 2.4568 9 6 0.4055 1.4980 2.9577 10 1 -0.1560 0.6066 3.1959 11 6 -0.1735 2.7395 3.1131 12 7 0.5104 3.8249 2.8235 13 14 -1.9295 2.8800 3.7347 14 1 -2.4758 1.5222 3.9857 15 1 -2.7621 3.5673 2.7151 16 1 -1.9466 3.6623 4.9969 17 7 2.0196 -0.6924 -1.1995 18 6 3.3813 -0.2464 -1.5484 19 6 2.9444 -0.2468 -3.0201 20 1 3.0681 -1.2064 -3.5220 21 6 3.4762 0.9360 -3.8318 22 6 1.5467 -0.0237 -2.4259 23 1 1.2989 1.0276 -2.2793 24 6 0.4609 -0.7836 -3.1435 25 6 0.2982 -2.1372 -2.9153 26 6 -0.7002 -2.8334 -3.5707 27 6 -1.5302 -2.1778 -4.4607 28 6 -1.3644 -0.8251 -4.6924 29 6 -0.3682 -0.1282 -4.0346 30 1 -0.3633 0.4530 0.9225 31 1 -0.3635 0.5723 -0.8535 32 1 -0.3633 -1.0254 -0.0688 33 1 1.9703 -1.2130 4.0957 34 1 3.5131 -1.4252 3.2338 35 1 3.2311 0.0386 4.2066 36 1 1.8945 1.8342 1.4664 37 1 2.4925 1.9043 3.1415 38 1 1.4223 3.7520 2.5011 39 1 3.6242 0.7457 -1.1677 40 1 4.1510 -0.9849 -1.3238 41 1 3.5370 1.8170 -3.1929 42 1 4.4679 0.6966 -4.2158 43 1 2.8028 1.1371 -4.6648 44 1 0.9488 -2.6501 -2.2226 45 1 -0.8295 -3.8903 -3.3898 46 1 -2.3081 -2.7224 -4.9752 47 1 -2.0126 -0.3129 -5.3881 48 1 -0.2383 0.9286 -4.2159 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081574446.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:48 Heat of formation + Delta-G solvation = 25.454172 kcal Electronic energy + Delta-G solvation = -27650.647811 eV Core-core repulsion = 24092.550528 eV Total energy + Delta-G solvation = -3558.097282 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.98583 -38.98455 -38.19669 -35.10186 -33.22234 -32.71790 -31.35862 -30.75703 -29.75118 -27.48789 -26.28786 -25.51150 -24.75678 -23.09612 -22.55748 -21.92235 -21.26808 -19.43123 -18.44161 -17.20309 -16.90173 -16.34284 -15.87255 -15.46151 -15.11090 -14.73152 -14.30675 -14.26462 -13.99964 -13.88068 -13.58490 -13.23414 -12.86708 -12.76870 -12.66644 -12.48295 -12.41370 -12.17618 -11.99121 -11.75166 -11.58373 -11.53013 -11.39527 -11.19741 -10.95963 -10.88303 -10.83109 -10.59847 -10.44400 -10.24373 -10.23901 -9.29908 -9.09367 -8.79061 -8.67530 -8.53510 -8.41506 -7.69543 -6.56457 -4.31757 1.44034 1.54873 3.33205 3.36024 3.36955 3.50985 3.65689 3.87698 4.28202 4.37830 4.39493 4.76391 4.97048 5.02976 5.08893 5.13245 5.16270 5.25794 5.28910 5.34990 5.43884 5.47236 5.60647 5.62515 5.65624 5.68922 5.77871 5.88861 5.91764 6.00199 6.05706 6.07677 6.18317 6.23402 6.28594 6.31844 6.37574 6.40162 6.50818 6.56955 6.66551 6.74835 6.82251 6.92501 7.13693 7.19715 7.39497 7.80550 8.09270 8.37933 8.61145 8.97601 9.38435 10.79240 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.011755 B = 0.004501 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.455438 B = 6219.155017 C = 7040.710573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.041 3.959 3 H 0.071 0.929 4 C 0.525 3.475 5 O -0.553 6.553 6 N -0.600 5.600 7 C 0.100 3.900 8 C 0.226 3.774 9 C -0.612 4.612 10 H 0.057 0.943 11 C 0.025 3.975 12 N -0.905 5.905 13 Si 1.070 2.930 14 H -0.287 1.287 15 H -0.285 1.285 16 H -0.285 1.285 17 N -0.439 5.439 18 C -0.001 4.001 19 C -0.105 4.105 20 H 0.102 0.898 21 C -0.142 4.142 22 C 0.070 3.930 23 H 0.087 0.913 24 C -0.062 4.062 25 C -0.088 4.088 26 C -0.126 4.126 27 C -0.126 4.126 28 C -0.126 4.126 29 C -0.116 4.116 30 H 0.097 0.903 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.047 0.953 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.028 0.972 37 H 0.023 0.977 38 H 0.268 0.732 39 H 0.069 0.931 40 H 0.086 0.914 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.135 0.865 45 H 0.118 0.882 46 H 0.116 0.884 47 H 0.117 0.883 48 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.071 -6.058 -13.682 15.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.070 4.070 3 H 0.089 0.911 4 C 0.312 3.688 5 O -0.432 6.432 6 N -0.332 5.332 7 C -0.044 4.044 8 C 0.105 3.895 9 C -0.650 4.650 10 H 0.076 0.924 11 C -0.180 4.180 12 N -0.540 5.540 13 Si 0.898 3.102 14 H -0.213 1.213 15 H -0.211 1.211 16 H -0.211 1.211 17 N -0.162 5.162 18 C -0.129 4.129 19 C -0.124 4.124 20 H 0.120 0.880 21 C -0.199 4.199 22 C -0.040 4.040 23 H 0.105 0.895 24 C -0.062 4.062 25 C -0.106 4.106 26 C -0.144 4.144 27 C -0.144 4.144 28 C -0.144 4.144 29 C -0.134 4.134 30 H 0.116 0.884 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.045 0.955 37 H 0.041 0.959 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.104 0.896 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.153 0.847 45 H 0.136 0.864 46 H 0.134 0.866 47 H 0.135 0.865 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.868 -6.281 -13.105 14.558 hybrid contribution 1.173 -0.017 -0.146 1.182 sum 2.041 -6.297 -13.251 14.813 Atomic orbital electron populations 1.21857 0.91400 1.02408 1.04449 1.22146 0.98475 0.96253 0.90165 0.91122 1.20094 0.77569 0.86897 0.84271 1.90590 1.52030 1.15271 1.85285 1.47955 1.61355 1.13463 1.10395 1.21379 0.97851 0.97188 0.87959 1.19574 0.96582 0.76148 0.97197 1.22323 0.98343 0.95412 1.48954 0.92434 1.25789 1.05611 0.91765 0.94824 1.70780 1.12002 1.30174 1.41072 0.83515 0.74340 0.75468 0.76889 1.21327 1.21089 1.21128 1.68833 1.03401 1.44437 0.99506 1.23910 0.94007 1.00326 0.94694 1.22791 0.94321 1.00155 0.95161 0.87986 1.21712 1.00979 0.97205 1.00035 1.22370 0.93238 0.96925 0.91445 0.89547 1.19551 0.95909 0.94145 0.96619 1.21174 0.97487 0.93878 0.98066 1.21180 0.96105 0.99873 0.97288 1.21097 0.99578 0.94806 0.98966 1.21019 0.98435 0.94548 1.00394 1.20966 0.95541 0.99668 0.97251 0.88398 0.92641 0.92380 0.93471 0.92341 0.91744 0.95477 0.95865 0.92160 0.91310 0.89599 0.92426 0.92216 0.92152 0.84727 0.86426 0.86642 0.86480 0.86451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 8.77 37.16 0.33 -2.44 16 2 C 0.04 0.78 1.42 -68.87 -0.10 0.68 16 3 H 0.07 1.37 5.42 -51.93 -0.28 1.09 16 4 C 0.52 11.36 6.71 -10.99 -0.07 11.29 16 5 O -0.55 -13.12 16.35 5.55 0.09 -13.03 16 6 N -0.60 -13.00 2.86 -182.94 -0.52 -13.52 16 7 C 0.10 1.90 10.39 59.85 0.62 2.52 16 8 C 0.23 5.26 4.34 -5.19 -0.02 5.23 16 9 C -0.61 -15.72 7.37 -34.44 -0.25 -15.97 16 10 H 0.06 1.55 7.78 -52.48 -0.41 1.14 16 11 C 0.03 0.67 5.46 -17.82 -0.10 0.57 16 12 N -0.90 -25.09 13.65 55.43 0.76 -24.33 16 13 Si 1.07 23.90 29.90 -169.99 -5.08 18.82 16 14 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 15 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 16 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 17 N -0.44 -7.22 4.49 -231.28 -1.04 -8.26 16 18 C 0.00 -0.01 7.14 -7.55 -0.05 -0.06 16 19 C -0.11 -1.25 4.22 -90.09 -0.38 -1.63 16 20 H 0.10 1.21 8.11 -51.93 -0.42 0.79 16 21 C -0.14 -1.38 9.79 37.16 0.36 -1.01 16 22 C 0.07 0.96 1.83 -72.59 -0.13 0.83 16 23 H 0.09 1.22 7.61 -51.93 -0.40 0.82 16 24 C -0.06 -0.85 4.83 -104.62 -0.50 -1.35 16 25 C -0.09 -1.25 9.43 -39.58 -0.37 -1.62 16 26 C -0.13 -1.58 10.05 -39.58 -0.40 -1.98 16 27 C -0.13 -1.44 10.05 -39.58 -0.40 -1.84 16 28 C -0.13 -1.44 10.05 -39.58 -0.40 -1.83 16 29 C -0.12 -1.43 9.74 -39.59 -0.39 -1.82 16 30 H 0.10 2.14 5.85 -51.93 -0.30 1.84 16 31 H 0.05 0.98 6.95 -51.93 -0.36 0.62 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 1.06 7.64 -51.93 -0.40 0.66 16 35 H 0.06 1.11 7.86 -51.93 -0.41 0.71 16 36 H 0.03 0.64 5.55 -51.93 -0.29 0.35 16 37 H 0.02 0.56 7.77 -51.93 -0.40 0.16 16 38 H 0.27 7.31 7.22 -40.82 -0.29 7.02 16 39 H 0.07 0.96 7.33 -51.93 -0.38 0.58 16 40 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 41 H 0.06 0.57 7.90 -51.93 -0.41 0.16 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.13 2.10 7.37 -52.49 -0.39 1.72 16 45 H 0.12 1.27 8.06 -52.48 -0.42 0.84 16 46 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 47 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 48 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 LS Contribution 383.43 15.07 5.78 5.78 Total: -1.00 -29.70 383.43 -10.02 -39.71 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -7.74 Total: 5.27 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: -2.26 Total: -10.44 kcal Atomic # 7 Polarization: -45.31 SS G_CDS: -0.80 Total: -46.11 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.09 Total: -13.03 kcal Atomic # 14 Polarization: 23.90 SS G_CDS: -5.08 Total: 18.82 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.70 -10.02 -39.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081574446.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.166 kcal (2) G-P(sol) polarization free energy of solvation -29.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds