Wall clock time and date at job start Tue Mar 31 2020 11:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.50540 * 2 1 4 4 C 1.53103 * 109.50466 * 120.08041 * 2 1 3 5 5 N 1.47013 * 109.25732 * 176.83086 * 4 2 1 6 6 C 1.39673 * 110.99992 * 177.61428 * 5 4 2 7 7 C 1.38928 * 120.07775 * 59.46923 * 6 5 4 8 8 C 1.38080 * 119.92360 * 179.75353 * 7 6 5 9 9 C 1.38301 * 120.07827 * 0.27032 * 8 7 6 10 10 C 1.38264 * 120.14980 * 359.96304 * 9 8 7 11 11 C 1.38134 * 120.07388 * 0.02562 * 10 9 8 12 12 C 1.50694 * 120.03718 * 179.97438 * 11 10 9 13 13 N 1.46494 * 109.47433 * 261.78861 * 12 11 10 14 14 C 1.36946 * 119.99722 * 83.83105 * 13 12 11 15 15 H 1.07998 * 119.99968 * 218.05223 * 14 13 12 16 16 C 1.38807 * 119.99789 * 38.05496 * 14 13 12 17 17 N 1.31627 * 120.00031 * 213.08094 * 16 14 13 18 18 Si 1.86802 * 120.00233 * 33.08276 * 16 14 13 19 19 H 1.48494 * 109.47322 * 94.02140 * 18 16 14 20 20 H 1.48504 * 109.47153 * 214.01819 * 18 16 14 21 21 H 1.48501 * 109.47144 * 334.01858 * 18 16 14 22 22 C 1.46498 * 120.00386 * 263.83172 * 13 12 11 23 23 C 1.52995 * 117.50155 * 243.74679 * 22 13 12 24 24 C 1.52995 * 60.00328 * 252.51017 * 23 22 13 25 25 C 1.47014 * 110.75131 * 301.38259 * 5 4 2 26 26 C 1.53103 * 109.25788 * 58.61932 * 25 5 4 27 27 O 1.43012 * 109.54398 * 239.88827 * 2 1 3 28 28 H 1.08998 * 109.47127 * 299.92094 * 1 2 3 29 29 H 1.09003 * 109.46762 * 59.91743 * 1 2 3 30 30 H 1.08997 * 109.47208 * 179.91202 * 1 2 3 31 31 H 1.08994 * 109.50426 * 56.89702 * 4 2 1 32 32 H 1.09003 * 109.50591 * 296.76332 * 4 2 1 33 33 H 1.07999 * 120.03569 * 0.02562 * 7 6 5 34 34 H 1.08006 * 119.95907 * 180.25789 * 8 7 6 35 35 H 1.08001 * 119.92855 * 179.97438 * 9 8 7 36 36 H 1.07997 * 119.97016 * 180.02562 * 10 9 8 37 37 H 1.09004 * 109.47195 * 21.79531 * 12 11 10 38 38 H 1.09005 * 109.46877 * 141.78943 * 12 11 10 39 39 H 0.96995 * 119.99947 * 180.02562 * 17 16 14 40 40 H 1.09000 * 115.54788 * 29.45572 * 22 13 12 41 41 H 1.09002 * 117.49752 * 359.97438 * 23 22 13 42 42 H 1.08999 * 117.50505 * 145.02077 * 23 22 13 43 43 H 1.09007 * 117.50431 * 252.51334 * 24 23 22 44 44 H 1.09009 * 117.50381 * 107.48395 * 24 23 22 45 45 H 1.09001 * 109.50731 * 178.55072 * 25 5 4 46 46 H 1.08995 * 109.51214 * 298.68855 * 25 5 4 47 47 H 1.08998 * 109.51205 * 183.21489 * 26 25 5 48 48 H 1.09006 * 109.54381 * 63.10596 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0412 -0.7233 1.2488 5 7 3.5093 -0.7869 1.2055 6 6 4.0182 -1.3935 2.3561 7 6 3.6504 -2.6938 2.6785 8 6 4.1594 -3.2922 3.8141 9 6 5.0301 -2.5966 4.6331 10 6 5.3946 -1.3007 4.3178 11 6 4.8893 -0.6961 3.1832 12 6 5.2866 0.7165 2.8407 13 7 4.2432 1.6404 3.2921 14 6 4.2284 2.0748 4.5907 15 1 3.2884 2.2002 5.1075 16 6 5.4215 2.3540 5.2428 17 7 5.5314 2.1360 6.5362 18 14 6.8714 3.0392 4.2847 19 1 6.8649 4.5217 4.3698 20 1 8.1366 2.5160 4.8600 21 1 6.7655 2.6245 2.8627 22 6 3.2156 2.0997 2.3544 23 6 3.1725 3.5942 2.0297 24 6 2.0889 2.9716 2.9123 25 6 3.9649 -1.4869 -0.0044 26 6 3.4344 -0.7558 -1.2407 27 8 2.0084 -0.6761 -1.1658 28 1 -0.3633 0.5126 0.8907 29 1 -0.3633 0.5151 -0.8893 30 1 -0.3633 -1.0276 -0.0016 31 1 1.6338 -1.7339 1.2764 32 1 1.7266 -0.1789 2.1392 33 1 2.9705 -3.2375 2.0394 34 1 3.8771 -4.3045 4.0630 35 1 5.4265 -3.0669 5.5209 36 1 6.0750 -0.7604 4.9592 37 1 6.2266 0.9599 3.3360 38 1 5.4104 0.8076 1.7615 39 1 6.3650 2.3315 6.9919 40 1 2.9639 1.4031 1.5546 41 1 3.9086 4.2358 2.5142 42 1 2.8927 3.8812 1.0161 43 1 1.0960 2.8489 2.4794 44 1 2.1123 3.2036 3.9772 45 1 5.0546 -1.4998 -0.0289 46 1 3.5882 -2.5096 0.0031 47 1 3.7217 -1.3031 -2.1384 48 1 3.8537 0.2497 -1.2776 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000297640708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:46 Heat of formation + Delta-G solvation = 54.741642 kcal Electronic energy + Delta-G solvation = -28762.382045 eV Core-core repulsion = 25205.554763 eV Total energy + Delta-G solvation = -3556.827282 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.31638 -38.45484 -36.95600 -35.30793 -33.69876 -32.78923 -31.78259 -29.97361 -29.78193 -27.96612 -25.84668 -25.10480 -23.70272 -23.00498 -21.86798 -21.43149 -20.46427 -20.08599 -19.50442 -17.02987 -16.44940 -16.36834 -15.67469 -15.43662 -15.42746 -15.01346 -14.89993 -14.60988 -14.35084 -13.71953 -13.56781 -13.27580 -12.88162 -12.66985 -12.60166 -12.36320 -12.27222 -12.03878 -11.82019 -11.74422 -11.47723 -11.25515 -11.15448 -10.97015 -10.79751 -10.54618 -10.48324 -10.32978 -9.92326 -9.89702 -9.57621 -9.38419 -9.30820 -8.42163 -8.29262 -8.27566 -8.01807 -6.64513 -6.09808 -3.36655 1.78577 1.94096 3.34700 3.47823 3.54024 3.71167 3.91165 4.20495 4.53161 4.83773 4.89268 4.99441 5.07763 5.11701 5.18153 5.19927 5.26607 5.32953 5.37964 5.45899 5.54702 5.56699 5.62641 5.74848 5.82149 5.88618 5.91043 5.94620 6.03123 6.04389 6.10331 6.16764 6.20342 6.32333 6.37824 6.47165 6.59289 6.64517 6.74423 6.89577 6.98038 6.99565 7.05519 7.15842 7.16348 7.20134 7.45115 7.78665 8.02089 8.42564 9.02055 9.71722 10.17496 11.05335 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.012178 B = 0.006554 C = 0.005083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.589146 B = 4271.206460 C = 5507.034488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.087 3.913 3 H 0.071 0.929 4 C 0.030 3.970 5 N -0.488 5.488 6 C 0.084 3.916 7 C -0.155 4.155 8 C -0.129 4.129 9 C -0.122 4.122 10 C -0.088 4.088 11 C -0.049 4.049 12 C 0.194 3.806 13 N -0.556 5.556 14 C -0.272 4.272 15 H 0.077 0.923 16 C 0.051 3.949 17 N -0.877 5.877 18 Si 0.842 3.158 19 H -0.291 1.291 20 H -0.295 1.295 21 H -0.258 1.258 22 C 0.122 3.878 23 C -0.230 4.230 24 C -0.197 4.197 25 C 0.022 3.978 26 C 0.065 3.935 27 O -0.385 6.385 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.041 0.959 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.126 0.874 37 H 0.052 0.948 38 H 0.058 0.942 39 H 0.263 0.737 40 H 0.115 0.885 41 H 0.085 0.915 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.099 0.901 45 H 0.085 0.915 46 H 0.042 0.958 47 H 0.095 0.905 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.688 -8.352 -12.399 15.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.029 3.971 3 H 0.089 0.911 4 C -0.097 4.097 5 N -0.209 5.209 6 C -0.010 4.010 7 C -0.175 4.175 8 C -0.148 4.148 9 C -0.140 4.140 10 C -0.107 4.107 11 C -0.052 4.052 12 C 0.068 3.932 13 N -0.272 5.272 14 C -0.400 4.400 15 H 0.094 0.906 16 C -0.152 4.152 17 N -0.516 5.516 18 Si 0.669 3.331 19 H -0.218 1.218 20 H -0.221 1.221 21 H -0.182 1.182 22 C 0.014 3.986 23 C -0.270 4.270 24 C -0.236 4.236 25 C -0.105 4.105 26 C -0.012 4.012 27 O -0.305 6.305 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.113 0.887 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.132 0.868 36 H 0.144 0.856 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.132 0.868 41 H 0.103 0.897 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.118 0.882 45 H 0.104 0.896 46 H 0.060 0.940 47 H 0.113 0.887 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.521 -7.927 -12.388 15.386 hybrid contribution 0.719 -0.177 0.143 0.754 sum -3.802 -8.105 -12.245 15.168 Atomic orbital electron populations 1.21741 0.92888 1.02735 1.02756 1.22252 0.94754 0.95901 0.84145 0.91129 1.22890 0.86949 1.00160 0.99736 1.59728 1.08795 1.51870 1.00480 1.18446 0.98622 0.91364 0.92555 1.21382 1.01713 0.95909 0.98525 1.20783 0.99025 0.99416 0.95572 1.21112 0.98485 0.95232 0.99184 1.21129 0.99673 0.93988 0.95952 1.20825 0.94498 0.96936 0.92972 1.20088 0.91534 0.83985 0.97551 1.43496 1.29701 1.46396 1.07627 1.18609 0.93805 1.41810 0.85775 0.90594 1.25431 0.97348 0.97751 0.94635 1.70064 1.26620 1.45063 1.09820 0.87480 0.83001 0.80309 0.82271 1.21826 1.22149 1.18224 1.21616 0.92684 0.89336 0.94970 1.23358 1.03221 1.02103 0.98361 1.23060 0.92700 1.07341 1.00465 1.22835 1.01288 0.96091 0.90297 1.22638 0.81057 1.00516 0.96948 1.87945 1.20987 1.78503 1.43024 0.90667 0.91679 0.92081 0.94069 0.88710 0.87496 0.87153 0.86754 0.85623 0.93032 0.92392 0.92761 0.86758 0.89658 0.91104 0.90903 0.88244 0.89638 0.93954 0.88688 0.92119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.57 37.16 0.36 -1.16 16 2 C 0.09 1.11 3.25 -26.68 -0.09 1.02 16 3 H 0.07 0.96 6.79 -51.93 -0.35 0.60 16 4 C 0.03 0.42 3.49 -3.71 -0.01 0.41 16 5 N -0.49 -7.38 2.56 -170.80 -0.44 -7.82 16 6 C 0.08 1.44 4.71 -83.79 -0.39 1.04 16 7 C -0.16 -2.43 8.63 -39.38 -0.34 -2.77 16 8 C -0.13 -1.98 10.04 -39.62 -0.40 -2.38 16 9 C -0.12 -2.05 10.04 -39.55 -0.40 -2.45 16 10 C -0.09 -1.73 9.67 -39.61 -0.38 -2.11 16 11 C -0.05 -0.96 5.43 -104.42 -0.57 -1.52 16 12 C 0.19 4.14 4.13 -5.20 -0.02 4.12 16 13 N -0.56 -12.67 2.37 -167.03 -0.40 -13.07 16 14 C -0.27 -7.22 8.82 -15.06 -0.13 -7.36 16 15 H 0.08 2.22 6.77 -52.49 -0.36 1.86 16 16 C 0.05 1.39 5.11 -17.43 -0.09 1.30 16 17 N -0.88 -25.39 13.97 55.49 0.78 -24.62 16 18 Si 0.84 20.92 26.32 -169.99 -4.47 16.45 16 19 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 20 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 21 H -0.26 -6.14 5.80 56.52 0.33 -5.81 16 22 C 0.12 2.43 6.11 -67.93 -0.42 2.01 16 23 C -0.23 -4.40 10.33 -26.74 -0.28 -4.68 16 24 C -0.20 -3.76 9.81 -26.73 -0.26 -4.02 16 25 C 0.02 0.28 5.41 -3.71 -0.02 0.26 16 26 C 0.07 0.75 7.01 37.21 0.26 1.01 16 27 O -0.39 -5.05 10.47 -35.23 -0.37 -5.42 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.04 0.58 7.19 -51.93 -0.37 0.20 16 32 H 0.09 1.52 7.45 -51.93 -0.39 1.13 16 33 H 0.11 1.50 7.04 -52.49 -0.37 1.13 16 34 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 35 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 36 H 0.13 2.66 8.05 -52.49 -0.42 2.24 16 37 H 0.05 1.18 4.01 -51.93 -0.21 0.98 16 38 H 0.06 1.17 7.61 -51.93 -0.40 0.77 16 39 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.12 2.05 3.08 -51.93 -0.16 1.89 16 41 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 42 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.07 1.18 8.14 -51.92 -0.42 0.76 16 44 H 0.10 2.15 6.41 -51.92 -0.33 1.82 16 45 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 46 H 0.04 0.53 7.44 -51.93 -0.39 0.15 16 47 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 366.79 15.07 5.53 5.53 Total: -1.00 -28.92 366.79 -10.15 -39.07 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -7.60 Total: 7.15 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: -3.18 Total: -17.27 kcal Atomic # 7 Polarization: -45.45 SS G_CDS: -0.06 Total: -45.50 kcal Atomic # 8 Polarization: -5.05 SS G_CDS: -0.37 Total: -5.42 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.47 Total: 16.45 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -28.92 -10.15 -39.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297640708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.816 kcal (2) G-P(sol) polarization free energy of solvation -28.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds