Wall clock time and date at job start Tue Mar 31 2020 11:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.50540 * 2 1 4 4 C 1.53103 * 109.50466 * 120.08041 * 2 1 3 5 5 N 1.47013 * 109.25732 * 176.83086 * 4 2 1 6 6 C 1.39673 * 110.99992 * 177.61428 * 5 4 2 7 7 C 1.38928 * 120.07775 * 59.46923 * 6 5 4 8 8 C 1.38080 * 119.92360 * 179.75353 * 7 6 5 9 9 C 1.38301 * 120.07827 * 0.27032 * 8 7 6 10 10 C 1.38264 * 120.14980 * 359.96304 * 9 8 7 11 11 C 1.38134 * 120.07388 * 0.02562 * 10 9 8 12 12 C 1.50694 * 120.03718 * 179.97438 * 11 10 9 13 13 N 1.46494 * 109.47433 * 261.78861 * 12 11 10 14 14 C 1.36946 * 119.99722 * 83.83105 * 13 12 11 15 15 H 1.07998 * 119.99968 * 218.05223 * 14 13 12 16 16 C 1.38807 * 119.99789 * 38.05496 * 14 13 12 17 17 N 1.31627 * 120.00031 * 213.08094 * 16 14 13 18 18 Si 1.86802 * 120.00233 * 33.08276 * 16 14 13 19 19 H 1.48494 * 109.47322 * 94.02140 * 18 16 14 20 20 H 1.48504 * 109.47153 * 214.01819 * 18 16 14 21 21 H 1.48501 * 109.47144 * 334.01858 * 18 16 14 22 22 C 1.46498 * 120.00386 * 263.83172 * 13 12 11 23 23 C 1.52995 * 117.50155 * 243.74679 * 22 13 12 24 24 C 1.52995 * 60.00328 * 252.51017 * 23 22 13 25 25 C 1.47014 * 110.75131 * 301.38259 * 5 4 2 26 26 C 1.53103 * 109.25788 * 58.61932 * 25 5 4 27 27 O 1.43012 * 109.54398 * 239.88827 * 2 1 3 28 28 H 1.08998 * 109.47127 * 299.92094 * 1 2 3 29 29 H 1.09003 * 109.46762 * 59.91743 * 1 2 3 30 30 H 1.08997 * 109.47208 * 179.91202 * 1 2 3 31 31 H 1.08994 * 109.50426 * 56.89702 * 4 2 1 32 32 H 1.09003 * 109.50591 * 296.76332 * 4 2 1 33 33 H 1.07999 * 120.03569 * 0.02562 * 7 6 5 34 34 H 1.08006 * 119.95907 * 180.25789 * 8 7 6 35 35 H 1.08001 * 119.92855 * 179.97438 * 9 8 7 36 36 H 1.07997 * 119.97016 * 180.02562 * 10 9 8 37 37 H 1.09004 * 109.47195 * 21.79531 * 12 11 10 38 38 H 1.09005 * 109.46877 * 141.78943 * 12 11 10 39 39 H 0.96995 * 119.99947 * 180.02562 * 17 16 14 40 40 H 1.09000 * 115.54788 * 29.45572 * 22 13 12 41 41 H 1.09002 * 117.49752 * 359.97438 * 23 22 13 42 42 H 1.08999 * 117.50505 * 145.02077 * 23 22 13 43 43 H 1.09007 * 117.50431 * 252.51334 * 24 23 22 44 44 H 1.09009 * 117.50381 * 107.48395 * 24 23 22 45 45 H 1.09001 * 109.50731 * 178.55072 * 25 5 4 46 46 H 1.08995 * 109.51214 * 298.68855 * 25 5 4 47 47 H 1.08998 * 109.51205 * 183.21489 * 26 25 5 48 48 H 1.09006 * 109.54381 * 63.10596 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0412 -0.7233 1.2488 5 7 3.5093 -0.7869 1.2055 6 6 4.0182 -1.3935 2.3561 7 6 3.6504 -2.6938 2.6785 8 6 4.1594 -3.2922 3.8141 9 6 5.0301 -2.5966 4.6331 10 6 5.3946 -1.3007 4.3178 11 6 4.8893 -0.6961 3.1832 12 6 5.2866 0.7165 2.8407 13 7 4.2432 1.6404 3.2921 14 6 4.2284 2.0748 4.5907 15 1 3.2884 2.2002 5.1075 16 6 5.4215 2.3540 5.2428 17 7 5.5314 2.1360 6.5362 18 14 6.8714 3.0392 4.2847 19 1 6.8649 4.5217 4.3698 20 1 8.1366 2.5160 4.8600 21 1 6.7655 2.6245 2.8627 22 6 3.2156 2.0997 2.3544 23 6 3.1725 3.5942 2.0297 24 6 2.0889 2.9716 2.9123 25 6 3.9649 -1.4869 -0.0044 26 6 3.4344 -0.7558 -1.2407 27 8 2.0084 -0.6761 -1.1658 28 1 -0.3633 0.5126 0.8907 29 1 -0.3633 0.5151 -0.8893 30 1 -0.3633 -1.0276 -0.0016 31 1 1.6338 -1.7339 1.2764 32 1 1.7266 -0.1789 2.1392 33 1 2.9705 -3.2375 2.0394 34 1 3.8771 -4.3045 4.0630 35 1 5.4265 -3.0669 5.5209 36 1 6.0750 -0.7604 4.9592 37 1 6.2266 0.9599 3.3360 38 1 5.4104 0.8076 1.7615 39 1 6.3650 2.3315 6.9919 40 1 2.9639 1.4031 1.5546 41 1 3.9086 4.2358 2.5142 42 1 2.8927 3.8812 1.0161 43 1 1.0960 2.8489 2.4794 44 1 2.1123 3.2036 3.9772 45 1 5.0546 -1.4998 -0.0289 46 1 3.5882 -2.5096 0.0031 47 1 3.7217 -1.3031 -2.1384 48 1 3.8537 0.2497 -1.2776 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000297640708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:45 Heat of formation + Delta-G solvation = 39.688444 kcal Electronic energy + Delta-G solvation = -28763.034801 eV Core-core repulsion = 25205.554763 eV Total energy + Delta-G solvation = -3557.480038 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.189 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.49674 -39.65092 -38.60891 -36.45595 -35.40152 -33.74234 -33.67391 -31.53151 -31.03674 -29.00396 -27.42602 -26.38890 -25.43118 -24.06431 -23.17583 -22.93993 -21.79711 -21.39325 -21.05660 -18.59161 -17.91330 -17.43109 -17.16331 -17.07219 -16.75265 -16.31229 -16.15950 -15.93882 -15.47689 -15.26494 -14.93765 -14.65800 -14.39405 -14.27334 -14.13110 -13.58002 -13.52848 -13.29216 -13.08075 -13.02755 -12.83859 -12.67258 -12.45771 -12.34274 -12.18002 -12.11363 -12.01883 -11.78197 -11.66141 -11.38883 -11.18866 -10.86949 -10.59655 -10.50746 -9.65016 -9.49156 -9.32353 -8.52101 -8.23823 -5.45938 0.45374 0.56956 1.31061 1.41329 1.49910 2.44224 2.69593 2.79351 2.89248 3.05032 3.42348 3.48456 3.85442 3.97623 4.06332 4.13150 4.14449 4.19133 4.23241 4.26615 4.41294 4.46424 4.48688 4.53910 4.57012 4.62271 4.64080 4.75336 4.76437 4.83779 4.88871 4.94515 4.95934 4.99991 5.07741 5.10575 5.14042 5.24003 5.31539 5.44431 5.56259 5.56479 5.63183 5.77660 5.92112 5.96589 6.05457 6.25252 6.27252 6.51080 7.06225 7.71985 8.17583 8.95992 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.012178 B = 0.006554 C = 0.005083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.589146 B = 4271.206460 C = 5507.034488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.091 3.909 3 H 0.063 0.937 4 C 0.035 3.965 5 N -0.500 5.500 6 C 0.090 3.910 7 C -0.152 4.152 8 C -0.117 4.117 9 C -0.128 4.128 10 C -0.114 4.114 11 C -0.074 4.074 12 C 0.198 3.802 13 N -0.565 5.565 14 C -0.252 4.252 15 H 0.039 0.961 16 C 0.007 3.993 17 N -0.922 5.922 18 Si 0.897 3.103 19 H -0.301 1.301 20 H -0.298 1.298 21 H -0.242 1.242 22 C 0.111 3.889 23 C -0.221 4.221 24 C -0.193 4.193 25 C 0.023 3.977 26 C 0.066 3.934 27 O -0.392 6.392 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.073 0.927 33 H 0.132 0.868 34 H 0.146 0.854 35 H 0.132 0.868 36 H 0.095 0.905 37 H 0.028 0.972 38 H 0.069 0.931 39 H 0.261 0.739 40 H 0.139 0.861 41 H 0.057 0.943 42 H 0.106 0.894 43 H 0.109 0.891 44 H 0.065 0.935 45 H 0.087 0.913 46 H 0.049 0.951 47 H 0.122 0.878 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.980 -10.064 -15.510 19.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.033 3.967 3 H 0.081 0.919 4 C -0.092 4.092 5 N -0.222 5.222 6 C -0.004 4.004 7 C -0.172 4.172 8 C -0.136 4.136 9 C -0.146 4.146 10 C -0.133 4.133 11 C -0.078 4.078 12 C 0.073 3.927 13 N -0.283 5.283 14 C -0.382 4.382 15 H 0.057 0.943 16 C -0.192 4.192 17 N -0.564 5.564 18 Si 0.725 3.275 19 H -0.229 1.229 20 H -0.225 1.225 21 H -0.165 1.165 22 C 0.004 3.996 23 C -0.262 4.262 24 C -0.231 4.231 25 C -0.103 4.103 26 C -0.011 4.011 27 O -0.311 6.311 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.149 0.851 34 H 0.164 0.836 35 H 0.150 0.850 36 H 0.113 0.887 37 H 0.046 0.954 38 H 0.088 0.912 39 H 0.070 0.930 40 H 0.156 0.844 41 H 0.076 0.924 42 H 0.124 0.876 43 H 0.127 0.873 44 H 0.084 0.916 45 H 0.106 0.894 46 H 0.067 0.933 47 H 0.140 0.860 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.817 -9.646 -15.549 19.201 hybrid contribution 1.033 0.260 1.076 1.514 sum -4.784 -9.385 -14.473 17.901 Atomic orbital electron populations 1.21744 0.91268 1.03266 1.03530 1.22243 0.95990 0.95106 0.83357 0.91870 1.22837 0.86306 1.00341 0.99692 1.59680 1.09378 1.52528 1.00627 1.18485 0.97498 0.91741 0.92725 1.21661 1.01482 0.95295 0.98781 1.21176 0.97239 1.00661 0.94537 1.21312 0.98844 0.94193 1.00218 1.21048 1.00528 0.95504 0.96239 1.20654 0.96530 0.96457 0.94115 1.19961 0.90092 0.84997 0.97633 1.43553 1.30581 1.47346 1.06807 1.18382 0.92210 1.40333 0.87232 0.94344 1.25815 0.99574 0.98692 0.95127 1.70144 1.27307 1.47637 1.11334 0.86596 0.80353 0.78602 0.81981 1.22920 1.22465 1.16531 1.21878 0.92238 0.90269 0.95223 1.23351 1.02362 1.00664 0.99820 1.23029 0.94435 1.06816 0.98832 1.22900 1.01509 0.96350 0.89539 1.22769 0.80285 1.00658 0.97344 1.87953 1.21801 1.78441 1.42901 0.90091 0.90732 0.91700 0.93569 0.90854 0.85065 0.83602 0.85019 0.88722 0.95362 0.91224 0.92989 0.84389 0.92403 0.87595 0.87324 0.91612 0.89432 0.93299 0.86005 0.92414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.57 71.98 0.69 -1.84 16 2 C 0.09 2.04 3.25 30.63 0.10 2.14 16 3 H 0.06 1.52 6.79 -2.38 -0.02 1.50 16 4 C 0.03 0.91 3.49 86.32 0.30 1.21 16 5 N -0.50 -14.02 2.56 -694.30 -1.78 -15.80 16 6 C 0.09 2.92 4.71 38.21 0.18 3.10 16 7 C -0.15 -4.31 8.63 22.40 0.19 -4.12 16 8 C -0.12 -3.26 10.04 22.25 0.22 -3.04 16 9 C -0.13 -4.19 10.04 22.29 0.22 -3.96 16 10 C -0.11 -4.58 9.67 22.25 0.22 -4.37 16 11 C -0.07 -2.93 5.43 -19.73 -0.11 -3.04 16 12 C 0.20 8.53 4.13 85.63 0.35 8.89 16 13 N -0.57 -26.17 2.37 -682.36 -1.62 -27.78 16 14 C -0.25 -13.97 8.82 84.03 0.74 -13.23 16 15 H 0.04 2.40 6.77 -2.91 -0.02 2.38 16 16 C 0.01 0.37 5.11 84.86 0.43 0.81 16 17 N -0.92 -56.23 13.97 21.65 0.30 -55.93 16 18 Si 0.90 45.07 26.32 68.60 1.81 46.87 16 19 H -0.30 -15.46 7.11 99.48 0.71 -14.76 16 20 H -0.30 -14.95 7.11 99.48 0.71 -14.25 16 21 H -0.24 -11.35 5.80 99.48 0.58 -10.77 16 22 C 0.11 4.32 6.11 44.99 0.27 4.59 16 23 C -0.22 -8.18 10.33 30.59 0.32 -7.86 16 24 C -0.19 -7.21 9.81 30.59 0.30 -6.91 16 25 C 0.02 0.53 5.41 86.32 0.47 0.99 16 26 C 0.07 1.29 7.01 72.02 0.50 1.80 16 27 O -0.39 -8.89 10.47 -148.98 -1.56 -10.45 16 28 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.05 1.15 7.19 -2.39 -0.02 1.13 16 32 H 0.07 2.23 7.45 -2.39 -0.02 2.21 16 33 H 0.13 3.11 7.04 -2.91 -0.02 3.09 16 34 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 35 H 0.13 3.75 8.06 -2.91 -0.02 3.72 16 36 H 0.09 4.31 8.05 -2.91 -0.02 4.29 16 37 H 0.03 1.33 4.01 -2.38 -0.01 1.32 16 38 H 0.07 2.77 7.61 -2.38 -0.02 2.75 16 39 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 40 H 0.14 4.69 3.08 -2.39 -0.01 4.68 16 41 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 42 H 0.11 3.17 8.14 -2.39 -0.02 3.16 16 43 H 0.11 3.25 8.14 -2.38 -0.02 3.23 16 44 H 0.07 2.93 6.41 -2.38 -0.02 2.91 16 45 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.05 1.04 7.44 -2.39 -0.02 1.02 16 47 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 48 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 Total: -1.00 -65.38 366.79 3.38 -62.00 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: 0.82 Total: 25.93 kcal Atomic # 6 Polarization: -30.25 SS G_CDS: 5.41 Total: -24.85 kcal Atomic # 7 Polarization: -96.42 SS G_CDS: -3.09 Total: -99.51 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: -1.56 Total: -10.45 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.81 Total: 46.87 kcal Total: -65.38 3.38 -62.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297640708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.693 kcal (2) G-P(sol) polarization free energy of solvation -65.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds