Wall clock time and date at job start Tue Mar 31 2020 11:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47256 * 2 1 4 4 N 1.46504 * 109.47016 * 119.99721 * 2 1 3 5 5 C 1.34770 * 119.99832 * 274.72574 * 4 2 1 6 6 O 1.21280 * 120.00398 * 0.02562 * 5 4 2 7 7 C 1.50704 * 120.00193 * 179.97438 * 5 4 2 8 8 N 1.46894 * 109.47621 * 173.73409 * 7 5 4 9 9 C 1.46848 * 111.00270 * 169.40216 * 8 7 5 10 10 C 1.53032 * 109.52410 * 185.83763 * 9 8 7 11 11 C 1.53127 * 109.27772 * 300.82097 * 10 9 8 12 12 C 1.53115 * 109.16184 * 57.65575 * 11 10 9 13 13 H 1.08991 * 109.53688 * 62.30371 * 12 11 10 14 14 C 1.50702 * 109.50328 * 182.40750 * 12 11 10 15 15 H 1.07999 * 120.00186 * 119.79872 * 14 12 11 16 16 C 1.37876 * 119.99700 * 299.80267 * 14 12 11 17 17 N 1.31516 * 120.00106 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 119.99945 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47175 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47236 * 119.99526 * 18 16 14 21 21 H 1.48505 * 109.47222 * 239.99827 * 18 16 14 22 22 C 1.46850 * 110.99583 * 293.60883 * 8 7 5 23 23 C 1.50700 * 109.47265 * 239.99261 * 2 1 3 24 24 C 1.38232 * 120.00476 * 279.73254 * 23 2 1 25 25 C 1.38230 * 119.99766 * 179.74430 * 24 23 2 26 26 C 1.38232 * 120.00433 * 0.54445 * 25 24 23 27 27 C 1.38238 * 119.99935 * 359.70881 * 26 25 24 28 28 C 1.38239 * 119.99707 * 0.02562 * 27 26 25 29 29 H 1.08996 * 109.47256 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47215 * 300.00200 * 1 2 3 31 31 H 1.08997 * 109.46792 * 60.00215 * 1 2 3 32 32 H 0.97004 * 120.00002 * 94.99691 * 4 2 1 33 33 H 1.09000 * 109.46985 * 293.73670 * 7 5 4 34 34 H 1.09004 * 109.46985 * 53.72509 * 7 5 4 35 35 H 1.09001 * 109.45718 * 305.85338 * 9 8 7 36 36 H 1.09000 * 109.46263 * 65.82019 * 9 8 7 37 37 H 1.08998 * 109.50399 * 180.87620 * 10 9 8 38 38 H 1.08999 * 109.53618 * 60.77633 * 10 9 8 39 39 H 1.08997 * 109.51757 * 297.74644 * 11 10 9 40 40 H 1.08998 * 109.57181 * 177.59242 * 11 10 9 41 41 H 0.97004 * 119.99890 * 180.02562 * 17 16 14 42 42 H 1.09000 * 109.46415 * 294.17578 * 22 8 7 43 43 H 1.08994 * 109.46216 * 54.14760 * 22 8 7 44 44 H 1.08001 * 119.99555 * 359.97438 * 24 23 2 45 45 H 1.08014 * 119.99896 * 180.27345 * 25 24 23 46 46 H 1.08002 * 119.99929 * 179.72245 * 26 25 24 47 47 H 1.07997 * 119.99982 * 179.97438 * 27 26 25 48 48 H 1.07996 * 119.99901 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1523 -0.0168 2.3557 6 8 1.8681 1.1610 2.4091 7 6 2.6540 -0.7273 3.5865 8 7 2.8525 0.2471 4.6677 9 6 3.0974 -0.4297 5.9477 10 6 3.1543 0.6071 7.0718 11 6 4.2754 1.6084 6.7798 12 6 4.0220 2.2639 5.4195 13 1 3.0835 2.8172 5.4507 14 6 5.1520 3.2076 5.0974 15 1 5.7521 3.0498 4.2135 16 6 5.4198 4.2724 5.9314 17 7 4.6887 4.4649 7.0076 18 14 6.8200 5.4426 5.5319 19 1 7.4833 5.0101 4.2757 20 1 6.2833 6.8166 5.3611 21 1 7.8068 5.4309 6.6416 22 6 3.9400 1.1790 4.3432 23 6 2.0324 -0.7106 -1.2304 24 6 2.0720 -2.0919 -1.2631 25 6 2.5279 -2.7436 -2.3937 26 6 2.9547 -2.0139 -3.4874 27 6 2.9200 -0.6324 -3.4527 28 6 2.4589 0.0193 -2.3241 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.2490 -1.6318 1.1527 33 1 1.9230 -1.4729 3.8990 34 1 3.6007 -1.2186 3.3617 35 1 2.2908 -1.1358 6.1453 36 1 4.0454 -0.9657 5.8996 37 1 3.3516 0.1060 8.0194 38 1 2.2020 1.1340 7.1302 39 1 5.2328 1.0877 6.7606 40 1 4.2926 2.3738 7.5555 41 1 4.8769 5.2143 7.5941 42 1 4.8840 0.6355 4.3026 43 1 3.7454 1.6414 3.3756 44 1 1.7433 -2.6620 -0.4067 45 1 2.5547 -3.8231 -2.4209 46 1 3.3150 -2.5231 -4.3690 47 1 3.2538 -0.0623 -4.3071 48 1 2.4322 1.0986 -2.2969 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599467939.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:29 Heat of formation + Delta-G solvation = -12.911314 kcal Electronic energy + Delta-G solvation = -26375.515417 eV Core-core repulsion = 22815.754482 eV Total energy + Delta-G solvation = -3559.760935 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.23426 -39.18807 -37.67259 -35.46476 -33.61808 -32.07240 -31.49190 -31.12073 -29.76564 -29.39996 -26.90863 -24.86695 -24.05126 -23.03584 -22.28022 -21.29737 -20.85222 -20.04521 -18.55228 -17.63887 -16.60994 -16.37566 -15.99833 -15.40230 -15.23263 -14.88605 -14.57496 -14.36467 -14.03636 -13.94034 -13.65441 -13.58699 -13.32012 -12.95284 -12.74795 -12.45322 -12.33543 -12.23081 -12.21350 -11.82459 -11.58931 -11.41265 -11.27987 -11.00698 -10.89181 -10.62381 -10.56839 -10.05112 -9.80903 -9.54377 -9.35900 -9.21966 -9.18070 -8.94035 -8.86762 -8.56388 -8.21197 -7.62258 -5.88136 -3.93095 1.02947 1.10611 2.92874 3.14097 3.35925 3.43470 3.47793 3.53217 4.35229 4.45746 4.57838 4.63208 4.70181 4.82884 4.98696 5.12876 5.15366 5.23755 5.29740 5.41899 5.43611 5.47596 5.54594 5.68686 5.69510 5.71597 5.83387 5.85755 6.06194 6.08758 6.16099 6.22137 6.25497 6.29020 6.45977 6.55220 6.66664 6.69208 6.75744 6.82432 7.11344 7.29803 7.41186 7.57323 7.70492 7.84251 7.87872 8.22670 8.28227 8.51205 8.59152 9.11034 9.70218 11.18249 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.014893 B = 0.002993 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.622474 B = 9353.113690 C =10482.482714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.183 3.817 3 H 0.097 0.903 4 N -0.736 5.736 5 C 0.512 3.488 6 O -0.502 6.502 7 C 0.038 3.962 8 N -0.521 5.521 9 C 0.065 3.935 10 C -0.116 4.116 11 C -0.112 4.112 12 C 0.057 3.943 13 H 0.036 0.964 14 C -0.509 4.509 15 H 0.052 0.948 16 C 0.061 3.939 17 N -0.889 5.889 18 Si 0.889 3.111 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.285 1.285 22 C 0.066 3.934 23 C -0.086 4.086 24 C -0.115 4.115 25 C -0.118 4.118 26 C -0.123 4.123 27 C -0.116 4.116 28 C -0.108 4.108 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.395 0.605 33 H 0.095 0.905 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.024 0.976 37 H 0.047 0.953 38 H 0.062 0.938 39 H 0.029 0.971 40 H 0.091 0.909 41 H 0.258 0.742 42 H 0.012 0.988 43 H 0.072 0.928 44 H 0.121 0.879 45 H 0.122 0.878 46 H 0.121 0.879 47 H 0.123 0.877 48 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.483 -16.980 -16.648 24.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.078 3.922 3 H 0.115 0.885 4 N -0.391 5.391 5 C 0.298 3.702 6 O -0.374 6.374 7 C -0.094 4.094 8 N -0.246 5.246 9 C -0.063 4.063 10 C -0.154 4.154 11 C -0.150 4.150 12 C 0.038 3.962 13 H 0.054 0.946 14 C -0.548 4.548 15 H 0.070 0.930 16 C -0.139 4.139 17 N -0.528 5.528 18 Si 0.717 3.283 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.212 1.212 22 C -0.060 4.060 23 C -0.087 4.087 24 C -0.133 4.133 25 C -0.136 4.136 26 C -0.141 4.141 27 C -0.135 4.135 28 C -0.126 4.126 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.230 0.770 33 H 0.113 0.887 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.042 0.958 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.047 0.953 40 H 0.109 0.891 41 H 0.068 0.932 42 H 0.031 0.969 43 H 0.090 0.910 44 H 0.139 0.861 45 H 0.140 0.860 46 H 0.139 0.861 47 H 0.141 0.859 48 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.139 -15.683 -16.374 23.770 hybrid contribution 1.673 -0.411 -0.374 1.763 sum -5.466 -16.094 -16.748 23.862 Atomic orbital electron populations 1.22149 0.94246 1.02174 1.02888 1.19731 0.94140 0.96958 0.81336 0.88490 1.46190 1.69544 1.13826 1.09584 1.20741 0.77735 0.87746 0.84001 1.90758 1.47119 1.15345 1.84139 1.21907 1.00602 0.95322 0.91569 1.61755 1.46649 1.15952 1.00246 1.22052 0.98101 0.96020 0.90131 1.21664 1.01597 0.97161 0.95008 1.21674 0.93867 0.96894 1.02553 1.18624 0.97416 0.90972 0.89146 0.94568 1.21185 1.15066 1.10035 1.08515 0.92957 1.24927 0.96384 0.97453 0.95163 1.69909 1.39349 1.29921 1.13667 0.86586 0.82401 0.81099 0.78189 1.19916 1.21052 1.21170 1.22419 0.88008 0.93711 1.01859 1.20010 0.99140 0.93957 0.95589 1.20925 1.00276 0.93784 0.98346 1.21129 0.99075 0.99897 0.93476 1.21180 1.00069 0.94267 0.98604 1.21169 0.99501 0.94661 0.98120 1.21080 0.98296 1.00216 0.93027 0.92499 0.91273 0.91694 0.77047 0.88667 0.92968 0.92368 0.95818 0.93424 0.91953 0.95253 0.89092 0.93221 0.96939 0.91001 0.86127 0.85994 0.86118 0.85883 0.85633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.47 37.16 0.35 -1.26 16 2 C 0.18 2.06 2.78 -69.08 -0.19 1.87 16 3 H 0.10 1.31 7.43 -51.93 -0.39 0.93 16 4 N -0.74 -8.50 5.03 -54.93 -0.28 -8.78 16 5 C 0.51 8.07 7.33 -10.99 -0.08 7.99 16 6 O -0.50 -10.36 14.37 5.56 0.08 -10.29 16 7 C 0.04 0.56 5.45 -4.98 -0.03 0.53 16 8 N -0.52 -10.13 4.35 -236.11 -1.03 -11.16 16 9 C 0.06 1.14 5.46 -3.84 -0.02 1.12 16 10 C -0.12 -2.33 6.09 -26.65 -0.16 -2.50 16 11 C -0.11 -2.74 5.03 -26.61 -0.13 -2.87 16 12 C 0.06 1.52 2.26 -91.69 -0.21 1.32 16 13 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 14 C -0.51 -14.69 8.56 -34.44 -0.29 -14.98 16 15 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 17 N -0.89 -26.28 11.36 55.43 0.63 -25.65 16 18 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 19 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 C 0.07 1.53 4.34 -3.83 -0.02 1.51 16 23 C -0.09 -0.84 4.96 -104.62 -0.52 -1.36 16 24 C -0.11 -0.96 9.06 -39.59 -0.36 -1.32 16 25 C -0.12 -0.90 10.05 -39.59 -0.40 -1.29 16 26 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 27 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 28 C -0.11 -1.02 9.67 -39.58 -0.38 -1.40 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.39 3.41 6.85 -40.82 -0.28 3.13 16 33 H 0.10 1.13 7.98 -51.93 -0.41 0.71 16 34 H 0.05 0.70 8.12 -51.93 -0.42 0.28 16 35 H 0.06 0.86 8.01 -51.93 -0.42 0.45 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.09 2.48 6.16 -51.93 -0.32 2.16 16 41 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 42 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.07 1.76 6.06 -51.93 -0.31 1.45 16 44 H 0.12 0.79 6.90 -52.49 -0.36 0.43 16 45 H 0.12 0.67 8.06 -52.48 -0.42 0.25 16 46 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 47 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 48 H 0.13 1.08 8.04 -52.49 -0.42 0.66 16 LS Contribution 380.91 15.07 5.74 5.74 Total: -1.00 -33.31 380.91 -11.16 -44.46 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -7.95 Total: 2.33 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: -3.33 Total: -13.67 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: -0.67 Total: -45.59 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.08 Total: -10.29 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.31 -11.16 -44.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599467939.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.552 kcal (2) G-P(sol) polarization free energy of solvation -33.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds