Wall clock time and date at job start Tue Mar 31 2020 11:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47346 * 2 1 4 4 N 1.46494 * 109.47465 * 120.00470 * 2 1 3 5 5 C 1.34775 * 120.00271 * 274.99779 * 4 2 1 6 6 O 1.21283 * 119.99637 * 0.02562 * 5 4 2 7 7 C 1.50698 * 120.00296 * 180.02562 * 5 4 2 8 8 N 1.46902 * 109.47143 * 180.02562 * 7 5 4 9 9 C 1.46839 * 110.99936 * 66.04390 * 8 7 5 10 10 C 1.53045 * 109.52202 * 174.16183 * 9 8 7 11 11 C 1.53116 * 109.27676 * 59.18112 * 10 9 8 12 12 C 1.53125 * 109.16116 * 302.34291 * 11 10 9 13 13 H 1.08993 * 109.50377 * 297.71777 * 12 11 10 14 14 C 1.50700 * 109.50434 * 177.59805 * 12 11 10 15 15 H 1.08001 * 119.99758 * 275.20568 * 14 12 11 16 16 C 1.37868 * 120.00061 * 95.20192 * 14 12 11 17 17 N 1.31519 * 120.00270 * 185.50136 * 16 14 12 18 18 Si 1.86806 * 120.00121 * 5.50481 * 16 14 12 19 19 H 1.48501 * 109.47088 * 84.77829 * 18 16 14 20 20 H 1.48498 * 109.47286 * 204.77871 * 18 16 14 21 21 H 1.48498 * 109.46878 * 324.77856 * 18 16 14 22 22 C 1.46847 * 110.99621 * 301.83647 * 8 7 5 23 23 C 1.50702 * 109.46900 * 240.00512 * 2 1 3 24 24 C 1.38232 * 120.00172 * 279.72773 * 23 2 1 25 25 C 1.38232 * 120.00136 * 179.78808 * 24 23 2 26 26 C 1.38233 * 120.00070 * 0.45797 * 25 24 23 27 27 C 1.38239 * 120.00056 * 359.77080 * 26 25 24 28 28 C 1.38235 * 119.99462 * 0.02562 * 27 26 25 29 29 H 1.09008 * 109.46772 * 299.99369 * 1 2 3 30 30 H 1.08992 * 109.47446 * 59.99593 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 0.96998 * 119.99903 * 94.99897 * 4 2 1 33 33 H 1.08996 * 109.46759 * 59.99966 * 7 5 4 34 34 H 1.08998 * 109.46731 * 299.99874 * 7 5 4 35 35 H 1.09002 * 109.46625 * 54.14978 * 9 8 7 36 36 H 1.09004 * 109.46591 * 294.17648 * 9 8 7 37 37 H 1.08995 * 109.50436 * 179.12189 * 10 9 8 38 38 H 1.09002 * 109.50102 * 299.23882 * 10 9 8 39 39 H 1.08993 * 109.52725 * 62.25173 * 11 10 9 40 40 H 1.09005 * 109.52123 * 182.37812 * 11 10 9 41 41 H 0.96998 * 120.00315 * 180.02562 * 17 16 14 42 42 H 1.08997 * 109.46404 * 65.82475 * 22 8 7 43 43 H 1.09003 * 109.45587 * 305.84730 * 22 8 7 44 44 H 1.08002 * 120.00074 * 359.97438 * 24 23 2 45 45 H 1.08001 * 120.00035 * 180.25033 * 25 24 23 46 46 H 1.08001 * 120.00193 * 179.79168 * 26 25 24 47 47 H 1.07993 * 119.99959 * 179.97438 * 27 26 25 48 48 H 1.08001 * 119.99655 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.1472 -0.0185 2.3571 6 8 1.8583 1.1582 2.4117 7 6 2.6502 -0.7288 3.5873 8 7 2.6990 0.2149 4.7121 9 6 1.3496 0.6541 5.0894 10 6 1.4268 1.5178 6.3505 11 6 2.3211 2.7305 6.0786 12 6 3.7060 2.2456 5.6408 13 1 4.1620 1.6710 6.4469 14 6 4.5749 3.4329 5.3144 15 1 4.5317 3.8798 4.3321 16 6 5.4247 3.9486 6.2696 17 7 6.1023 5.0483 6.0223 18 14 5.6139 3.0854 7.9154 19 1 6.6269 2.0062 7.7948 20 1 6.0542 4.0653 8.9407 21 1 4.3110 2.4984 8.3191 22 6 3.5626 1.3609 4.4003 23 6 2.0323 -0.7103 -1.2306 24 6 2.0719 -2.0917 -1.2635 25 6 2.5286 -2.7433 -2.3939 26 6 2.9544 -2.0134 -3.4878 27 6 2.9192 -0.6319 -3.4532 28 6 2.4586 0.0196 -2.3243 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 2.2491 -1.6318 1.1524 33 1 3.6494 -1.1205 3.3975 34 1 1.9780 -1.5511 3.8323 35 1 0.7249 -0.2177 5.2840 36 1 0.9165 1.2367 4.2762 37 1 0.4268 1.8565 6.6214 38 1 1.8469 0.9316 7.1678 39 1 1.8810 3.3378 5.2877 40 1 2.4130 3.3262 6.9868 41 1 6.7005 5.4110 6.6942 42 1 3.1193 1.9401 3.5904 43 1 4.5455 1.0022 4.0946 44 1 1.7434 -2.6619 -0.4072 45 1 2.5557 -3.8226 -2.4211 46 1 3.3143 -2.5225 -4.3697 47 1 3.2523 -0.0617 -4.3077 48 1 2.4315 1.0989 -2.2971 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599467940.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:32 Heat of formation + Delta-G solvation = -10.448561 kcal Electronic energy + Delta-G solvation = -26672.400005 eV Core-core repulsion = 23112.745864 eV Total energy + Delta-G solvation = -3559.654142 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.45996 -39.47104 -37.59911 -35.53353 -33.51105 -32.22998 -31.72719 -31.16814 -30.12203 -29.46365 -27.01221 -24.89558 -24.12759 -23.07710 -22.39708 -21.32590 -20.80501 -20.20179 -18.80881 -17.67202 -16.76519 -16.70729 -16.16610 -15.41534 -15.33572 -15.03674 -14.63778 -14.32138 -14.26930 -13.87650 -13.69879 -13.67152 -13.38740 -13.29355 -12.74474 -12.49926 -12.41663 -12.30453 -12.20071 -11.82953 -11.80419 -11.43192 -11.36843 -11.06276 -10.93686 -10.83384 -10.49385 -10.17116 -10.02642 -9.71053 -9.42337 -9.26093 -9.23651 -9.12231 -8.94719 -8.81952 -8.39221 -7.54298 -5.96969 -3.94829 0.99931 1.07836 2.74022 3.14763 3.38764 3.45758 3.50733 3.51328 4.30373 4.42078 4.53454 4.54774 4.67427 4.80145 4.93613 5.06920 5.10463 5.19220 5.25469 5.29769 5.34891 5.47066 5.54706 5.64583 5.65128 5.65877 5.77222 5.79786 5.97840 6.01038 6.12518 6.18777 6.19924 6.27300 6.37845 6.45882 6.49495 6.58330 6.66264 6.74317 6.95192 6.99017 7.06705 7.38428 7.45214 7.60242 7.67964 7.73423 7.98378 8.34870 8.67215 9.09888 9.67422 11.16617 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.019185 B = 0.002953 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.152487 B = 9481.153032 C =10133.298906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.180 3.820 3 H 0.096 0.904 4 N -0.732 5.732 5 C 0.479 3.521 6 O -0.519 6.519 7 C 0.036 3.964 8 N -0.518 5.518 9 C 0.051 3.949 10 C -0.118 4.118 11 C -0.111 4.111 12 C 0.023 3.977 13 H 0.034 0.966 14 C -0.506 4.506 15 H 0.070 0.930 16 C 0.069 3.931 17 N -0.905 5.905 18 Si 0.879 3.121 19 H -0.277 1.277 20 H -0.293 1.293 21 H -0.263 1.263 22 C 0.051 3.949 23 C -0.087 4.087 24 C -0.115 4.115 25 C -0.117 4.117 26 C -0.122 4.122 27 C -0.116 4.116 28 C -0.108 4.108 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.396 0.604 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.051 0.949 38 H 0.057 0.943 39 H 0.051 0.949 40 H 0.049 0.951 41 H 0.262 0.738 42 H 0.067 0.933 43 H 0.057 0.943 44 H 0.120 0.880 45 H 0.122 0.878 46 H 0.121 0.879 47 H 0.124 0.876 48 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.637 -18.132 -16.033 26.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.075 3.925 3 H 0.114 0.886 4 N -0.386 5.386 5 C 0.265 3.735 6 O -0.394 6.394 7 C -0.096 4.096 8 N -0.240 5.240 9 C -0.077 4.077 10 C -0.155 4.155 11 C -0.149 4.149 12 C 0.004 3.996 13 H 0.052 0.948 14 C -0.544 4.544 15 H 0.089 0.911 16 C -0.132 4.132 17 N -0.543 5.543 18 Si 0.707 3.293 19 H -0.203 1.203 20 H -0.219 1.219 21 H -0.188 1.188 22 C -0.075 4.075 23 C -0.088 4.088 24 C -0.133 4.133 25 C -0.135 4.135 26 C -0.141 4.141 27 C -0.134 4.134 28 C -0.126 4.126 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.231 0.769 33 H 0.119 0.881 34 H 0.114 0.886 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.138 0.862 45 H 0.140 0.860 46 H 0.139 0.861 47 H 0.142 0.858 48 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.504 -17.351 -15.456 25.500 hybrid contribution 0.034 -0.474 0.039 0.477 sum -10.470 -17.825 -15.417 25.788 Atomic orbital electron populations 1.22134 0.94300 1.02136 1.02770 1.19756 0.94089 0.97020 0.81649 0.88582 1.46463 1.68590 1.13925 1.09672 1.22616 0.77400 0.88207 0.85304 1.90687 1.48532 1.15771 1.84427 1.22367 1.02731 0.97156 0.87386 1.62530 1.11832 1.18038 1.31609 1.22151 0.89470 0.97890 0.98188 1.21645 0.99192 0.97879 0.96827 1.21834 0.97231 0.95478 1.00340 1.19121 0.92965 0.94271 0.93264 0.94799 1.20991 1.20869 1.12133 1.00445 0.91149 1.25057 0.95327 0.94574 0.98193 1.69926 1.28570 1.20580 1.35232 0.86824 0.79000 0.79413 0.84085 1.20303 1.21940 1.18763 1.22608 0.94378 0.89963 1.00556 1.19994 0.99264 0.93957 0.95571 1.20916 1.00320 0.93748 0.98363 1.21131 0.99030 0.99920 0.93462 1.21187 0.99998 0.94259 0.98612 1.21173 0.99438 0.94673 0.98118 1.21077 0.98305 1.00198 0.93039 0.91520 0.91679 0.92491 0.76914 0.88069 0.88615 0.92817 0.92826 0.93077 0.92374 0.93024 0.93258 0.92834 0.91495 0.92436 0.86159 0.85959 0.86075 0.85849 0.85677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.46 37.16 0.35 -1.17 16 2 C 0.18 1.93 2.78 -69.08 -0.19 1.74 16 3 H 0.10 1.26 7.44 -51.93 -0.39 0.88 16 4 N -0.73 -7.82 5.03 -54.94 -0.28 -8.10 16 5 C 0.48 6.85 7.21 -10.99 -0.08 6.77 16 6 O -0.52 -9.70 11.29 5.55 0.06 -9.64 16 7 C 0.04 0.48 5.86 -4.98 -0.03 0.45 16 8 N -0.52 -9.29 4.86 -236.11 -1.15 -10.44 16 9 C 0.05 0.88 5.09 -3.83 -0.02 0.86 16 10 C -0.12 -2.19 6.09 -26.65 -0.16 -2.36 16 11 C -0.11 -2.52 5.27 -26.61 -0.14 -2.66 16 12 C 0.02 0.57 1.94 -91.69 -0.18 0.40 16 13 H 0.03 0.86 5.27 -51.93 -0.27 0.59 16 14 C -0.51 -14.78 8.86 -34.44 -0.31 -15.08 16 15 H 0.07 2.26 8.06 -52.49 -0.42 1.83 16 16 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 17 N -0.90 -28.48 13.96 55.43 0.77 -27.70 16 18 Si 0.88 22.43 27.01 -169.99 -4.59 17.84 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 21 H -0.26 -6.47 6.80 56.52 0.38 -6.09 16 22 C 0.05 1.13 4.24 -3.83 -0.02 1.11 16 23 C -0.09 -0.82 4.96 -104.62 -0.52 -1.34 16 24 C -0.12 -0.92 9.06 -39.59 -0.36 -1.28 16 25 C -0.12 -0.87 10.05 -39.59 -0.40 -1.26 16 26 C -0.12 -0.92 10.05 -39.58 -0.40 -1.31 16 27 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 28 C -0.11 -1.00 9.67 -39.58 -0.38 -1.38 16 29 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.40 3.12 6.85 -40.82 -0.28 2.84 16 33 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.10 1.00 8.06 -51.93 -0.42 0.58 16 35 H 0.05 0.79 8.06 -51.93 -0.42 0.37 16 36 H 0.05 1.02 6.00 -51.93 -0.31 0.70 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 42 H 0.07 1.59 5.36 -51.93 -0.28 1.32 16 43 H 0.06 1.27 8.12 -51.93 -0.42 0.85 16 44 H 0.12 0.75 6.90 -52.49 -0.36 0.38 16 45 H 0.12 0.65 8.06 -52.49 -0.42 0.22 16 46 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 47 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 48 H 0.13 1.07 8.04 -52.49 -0.42 0.64 16 LS Contribution 375.02 15.07 5.65 5.65 Total: -1.00 -34.13 375.02 -10.65 -44.78 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -7.80 Total: 3.50 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: -3.32 Total: -15.88 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: -0.65 Total: -46.24 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.06 Total: -9.64 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.59 Total: 17.84 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.13 -10.65 -44.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599467940.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.329 kcal (2) G-P(sol) polarization free energy of solvation -34.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds