Wall clock time and date at job start Tue Mar 31 2020 11:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47102 * 2 1 4 4 C 1.50691 * 109.47480 * 239.99450 * 2 1 3 5 5 O 1.21276 * 120.00128 * 275.02641 * 4 2 1 6 6 N 1.34783 * 120.00026 * 95.03056 * 4 2 1 7 7 C 1.46499 * 119.99667 * 354.86694 * 6 4 2 8 8 C 1.50699 * 109.47437 * 275.42720 * 7 6 4 9 9 H 1.08006 * 119.99653 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00079 * 180.02562 * 8 7 6 11 11 N 1.31509 * 120.00316 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 119.99940 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.47203 * 359.97438 * 12 10 8 14 14 H 1.48507 * 109.46988 * 119.99292 * 12 10 8 15 15 H 1.48496 * 109.47217 * 239.99549 * 12 10 8 16 16 C 1.46493 * 120.00056 * 174.87221 * 6 4 2 17 17 C 1.50708 * 109.47328 * 89.99732 * 16 6 4 18 18 C 1.38673 * 120.41899 * 89.99585 * 17 16 6 19 19 C 1.38624 * 118.42335 * 179.97438 * 18 17 16 20 20 C 1.38228 * 119.15897 * 0.25283 * 19 18 17 21 21 N 1.31864 * 120.76191 * 359.50350 * 20 19 18 22 22 C 1.31885 * 121.72475 * 0.48314 * 21 20 19 23 23 C 1.53004 * 109.47102 * 119.99271 * 2 1 3 24 24 C 1.54264 * 110.03467 * 297.17163 * 23 2 1 25 25 C 1.54890 * 104.19587 * 217.10665 * 24 23 2 26 26 C 1.54886 * 102.74842 * 37.93772 * 25 24 23 27 27 C 1.53877 * 110.03419 * 180.02562 * 23 2 1 28 28 H 1.09001 * 109.46581 * 175.07775 * 1 2 3 29 29 H 1.08996 * 109.47510 * 295.07473 * 1 2 3 30 30 H 1.09001 * 109.46793 * 55.07903 * 1 2 3 31 31 H 1.09000 * 109.47037 * 35.42560 * 7 6 4 32 32 H 1.09003 * 109.46883 * 155.42497 * 7 6 4 33 33 H 0.97003 * 120.00566 * 180.02562 * 11 10 8 34 34 H 1.08993 * 109.47372 * 329.99902 * 16 6 4 35 35 H 1.09000 * 109.47019 * 209.99334 * 16 6 4 36 36 H 1.08006 * 120.78587 * 359.96419 * 18 17 16 37 37 H 1.07999 * 120.42183 * 179.97438 * 19 18 17 38 38 H 1.07996 * 119.61979 * 179.74595 * 20 19 18 39 39 H 1.07993 * 119.61640 * 179.75056 * 22 21 20 40 40 H 1.09004 * 110.01545 * 58.61127 * 23 2 1 41 41 H 1.09005 * 110.48746 * 335.78108 * 24 23 2 42 42 H 1.08998 * 110.48658 * 98.42391 * 24 23 2 43 43 H 1.09010 * 110.75214 * 279.62409 * 25 24 23 44 44 H 1.09003 * 110.91421 * 156.33600 * 25 24 23 45 45 H 1.08999 * 110.48157 * 203.37889 * 26 25 24 46 46 H 1.09005 * 110.59447 * 80.79897 * 26 25 24 47 47 H 1.08999 * 110.03076 * 238.57311 * 27 23 2 48 48 H 1.08997 * 110.02949 * 359.94895 * 27 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 2.1478 -1.9177 -1.2287 6 7 2.3536 -0.0042 -2.3324 7 6 2.1089 1.4396 -2.3742 8 6 0.6833 1.6957 -2.7904 9 1 0.0255 0.8659 -3.0029 10 6 0.2192 2.9893 -2.9008 11 7 1.0204 3.9997 -2.6425 12 14 -1.5477 3.3067 -3.4174 13 1 -2.2361 2.0115 -3.6489 14 1 -2.2500 4.0562 -2.3448 15 1 -1.5616 4.1049 -4.6695 16 6 2.9472 -0.6804 -3.4885 17 6 1.8532 -1.1474 -4.4137 18 6 1.3926 -0.3228 -5.4291 19 6 0.3852 -0.7944 -6.2564 20 6 -0.1267 -2.0601 -6.0400 21 7 0.3389 -2.8187 -5.0672 22 6 1.2967 -2.4030 -4.2614 23 6 2.0400 -0.7211 1.2494 24 6 1.5922 0.0362 2.5165 25 6 2.7935 -0.0999 3.4848 26 6 4.0122 0.0245 2.5371 27 6 3.5787 -0.7281 1.2628 28 1 -0.3632 -1.0239 -0.0882 29 1 -0.3634 0.4355 0.9308 30 1 -0.3633 0.5883 -0.8426 31 1 2.2811 1.8660 -1.3860 32 1 2.7858 1.9021 -3.0926 33 1 0.6938 4.9098 -2.7199 34 1 3.5271 -1.5386 -3.1492 35 1 3.6003 0.0127 -4.0189 36 1 1.8088 0.6636 -5.5717 37 1 0.0021 -0.1791 -7.0570 38 1 -0.9145 -2.4333 -6.6775 39 1 1.6497 -3.0512 -3.4731 40 1 1.6615 -1.7431 1.2710 41 1 1.4038 1.0852 2.2875 42 1 0.7032 -0.4275 2.9439 43 1 2.7845 -1.0724 3.9771 44 1 2.7928 0.7040 4.2210 45 1 4.8892 -0.4479 2.9796 46 1 4.2169 1.0710 2.3110 47 1 3.9472 -1.7535 1.2915 48 1 3.9621 -0.2186 0.3788 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610520607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:37 Heat of formation + Delta-G solvation = -25.403076 kcal Electronic energy + Delta-G solvation = -27918.673131 eV Core-core repulsion = 24358.370513 eV Total energy + Delta-G solvation = -3560.302618 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.04470 -39.33401 -37.54569 -35.18338 -33.29084 -32.52448 -31.88249 -31.04479 -28.57143 -27.66797 -27.15056 -26.03559 -23.37216 -23.11097 -22.75559 -21.54826 -20.40431 -19.56607 -17.95933 -16.75411 -16.54884 -16.51849 -15.70318 -15.66708 -15.24266 -14.94524 -14.74560 -14.43174 -13.87338 -13.42593 -13.13054 -13.11584 -12.80463 -12.67517 -12.53632 -12.45403 -12.09439 -11.90143 -11.60251 -11.48713 -11.13338 -11.09743 -11.00114 -10.90333 -10.86044 -10.78511 -10.58746 -10.43302 -10.31454 -10.07342 -9.84828 -9.76230 -9.30749 -9.05648 -8.95291 -8.63238 -8.44594 -7.77381 -6.23401 -4.28202 1.53385 1.78666 3.16166 3.26246 3.30437 3.43359 3.88274 4.27826 4.39563 4.81666 4.86230 4.87298 4.98433 5.09983 5.19810 5.34640 5.39239 5.44738 5.49573 5.54347 5.67066 5.72887 5.76928 5.83540 5.88702 5.94962 5.99636 6.01553 6.06538 6.10390 6.13393 6.22974 6.27104 6.29932 6.39681 6.48587 6.55682 6.57332 6.59285 6.65444 6.79331 6.83230 6.98049 7.16218 7.17449 7.48496 7.72672 8.01740 8.28037 8.40013 8.77384 9.02424 9.38576 10.83314 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.010689 B = 0.005677 C = 0.004271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.866470 B = 4931.156138 C = 6554.982603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.095 4.095 3 H 0.097 0.903 4 C 0.528 3.472 5 O -0.571 6.571 6 N -0.595 5.595 7 C 0.237 3.763 8 C -0.524 4.524 9 H 0.061 0.939 10 C 0.068 3.932 11 N -0.890 5.890 12 Si 0.886 3.114 13 H -0.272 1.272 14 H -0.282 1.282 15 H -0.283 1.283 16 C 0.163 3.837 17 C -0.140 4.140 18 C -0.038 4.038 19 C -0.181 4.181 20 C 0.087 3.913 21 N -0.496 5.496 22 C 0.115 3.885 23 C -0.074 4.074 24 C -0.119 4.119 25 C -0.124 4.124 26 C -0.125 4.125 27 C -0.116 4.116 28 H 0.046 0.954 29 H 0.056 0.944 30 H 0.084 0.916 31 H 0.040 0.960 32 H 0.034 0.966 33 H 0.264 0.736 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.136 0.864 37 H 0.128 0.872 38 H 0.146 0.854 39 H 0.155 0.845 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.058 0.942 46 H 0.064 0.936 47 H 0.060 0.940 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.544 -5.355 2.934 7.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 H 0.115 0.885 4 C 0.317 3.683 5 O -0.451 6.451 6 N -0.325 5.325 7 C 0.117 3.883 8 C -0.562 4.562 9 H 0.079 0.921 10 C -0.135 4.135 11 N -0.528 5.528 12 Si 0.713 3.287 13 H -0.197 1.197 14 H -0.208 1.208 15 H -0.209 1.209 16 C 0.039 3.961 17 C -0.143 4.143 18 C -0.065 4.065 19 C -0.201 4.201 20 C -0.070 4.070 21 N -0.205 5.205 22 C -0.042 4.042 23 C -0.093 4.093 24 C -0.156 4.156 25 C -0.161 4.161 26 C -0.162 4.162 27 C -0.154 4.154 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.103 0.897 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.154 0.846 37 H 0.146 0.854 38 H 0.163 0.837 39 H 0.172 0.828 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.077 0.923 46 H 0.083 0.917 47 H 0.079 0.921 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.280 -6.588 3.049 7.966 hybrid contribution -0.860 1.474 -0.599 1.809 sum 2.421 -5.113 2.450 6.165 Atomic orbital electron populations 1.21779 0.92999 1.01849 1.03368 1.21346 0.97821 1.00713 0.91693 0.88475 1.20497 0.76215 0.87026 0.84534 1.90550 1.55454 1.14534 1.84594 1.48317 1.60522 1.11149 1.12494 1.19498 0.96932 0.73426 0.98417 1.21440 0.96331 0.92049 1.46428 0.92106 1.24871 0.97474 0.96019 0.95153 1.69914 1.35426 0.98933 1.48576 0.86617 0.85099 0.78493 0.78456 1.19665 1.20806 1.20885 1.20113 0.92201 0.97614 0.86148 1.21245 1.00620 0.95358 0.97072 1.21513 0.94094 0.98661 0.92209 1.22050 0.98889 0.97569 1.01611 1.22617 0.98104 0.91279 0.95030 1.67673 1.11438 1.36613 1.04778 1.22749 0.91451 0.94085 0.95928 1.21645 0.94891 0.99623 0.93128 1.22445 0.97433 1.00839 0.94893 1.22478 0.95230 1.01062 0.97379 1.22355 0.97464 1.00524 0.95867 1.22150 0.95505 1.00175 0.97562 0.93468 0.92545 0.89684 0.94201 0.94774 0.92635 0.90112 0.90133 0.84640 0.85434 0.83660 0.82761 0.90541 0.91147 0.91932 0.91919 0.91980 0.92286 0.91692 0.92076 0.92076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.06 37.16 0.34 -2.24 16 2 C -0.09 -1.69 1.49 -91.77 -0.14 -1.83 16 3 H 0.10 1.84 5.78 -51.93 -0.30 1.54 16 4 C 0.53 10.41 5.51 -10.99 -0.06 10.35 16 5 O -0.57 -12.04 15.10 5.56 0.08 -11.96 16 6 N -0.59 -11.65 2.45 -176.44 -0.43 -12.09 16 7 C 0.24 5.18 5.01 -5.19 -0.03 5.15 16 8 C -0.52 -12.56 7.63 -34.44 -0.26 -12.82 16 9 H 0.06 1.56 7.57 -52.48 -0.40 1.16 16 10 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 11 N -0.89 -23.23 13.29 55.43 0.74 -22.49 16 12 Si 0.89 20.02 29.54 -169.99 -5.02 15.00 16 13 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 14 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 15 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 16 C 0.16 2.84 5.56 -5.19 -0.03 2.81 16 17 C -0.14 -2.50 5.48 -104.48 -0.57 -3.07 16 18 C -0.04 -0.66 9.84 -39.28 -0.39 -1.04 16 19 C -0.18 -2.86 10.11 -39.44 -0.40 -3.26 16 20 C 0.09 1.40 11.18 -17.54 -0.20 1.20 16 21 N -0.50 -9.12 10.36 -13.25 -0.14 -9.26 16 22 C 0.11 2.13 10.75 -17.55 -0.19 1.94 16 23 C -0.07 -1.14 2.15 -89.50 -0.19 -1.33 16 24 C -0.12 -1.56 5.23 -25.07 -0.13 -1.70 16 25 C -0.12 -1.43 6.91 -24.74 -0.17 -1.61 16 26 C -0.12 -1.53 6.83 -25.10 -0.17 -1.70 16 27 C -0.12 -1.70 5.94 -25.64 -0.15 -1.85 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.06 0.89 7.13 -51.93 -0.37 0.52 16 30 H 0.08 1.76 6.05 -51.93 -0.31 1.45 16 31 H 0.04 0.92 5.88 -51.93 -0.31 0.61 16 32 H 0.03 0.78 7.83 -51.93 -0.41 0.37 16 33 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 34 H 0.08 1.35 7.45 -51.93 -0.39 0.96 16 35 H 0.08 1.26 7.81 -51.93 -0.41 0.85 16 36 H 0.14 2.29 8.06 -52.48 -0.42 1.86 16 37 H 0.13 1.68 8.06 -52.49 -0.42 1.25 16 38 H 0.15 1.87 8.06 -52.49 -0.42 1.45 16 39 H 0.16 2.89 7.41 -52.49 -0.39 2.50 16 40 H 0.08 1.26 7.92 -51.93 -0.41 0.85 16 41 H 0.07 0.97 7.77 -51.93 -0.40 0.56 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.06 0.97 7.10 -51.93 -0.37 0.60 16 LS Contribution 381.41 15.07 5.75 5.75 Total: -1.00 -27.43 381.41 -9.68 -37.12 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -7.82 Total: 7.35 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -2.84 Total: -9.41 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: 0.17 Total: -43.84 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.08 Total: -11.96 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -27.43 -9.68 -37.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610520607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.712 kcal (2) G-P(sol) polarization free energy of solvation -27.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds