Wall clock time and date at job start Tue Mar 31 2020 11:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47134 * 2 1 4 4 C 1.50696 * 109.47055 * 120.00152 * 2 1 3 5 5 O 1.21281 * 119.99905 * 20.76456 * 4 2 1 6 6 N 1.34781 * 120.00065 * 201.03967 * 4 2 1 7 7 C 1.46918 * 120.62797 * 4.61272 * 6 4 2 8 8 C 1.53198 * 108.77686 * 126.36868 * 7 6 4 9 9 C 1.53039 * 109.31068 * 54.63125 * 8 7 6 10 10 C 1.53036 * 109.53928 * 298.63894 * 9 8 7 11 11 H 1.09004 * 109.49680 * 301.37806 * 10 9 8 12 12 N 1.46504 * 109.49656 * 181.31605 * 10 9 8 13 13 C 1.46496 * 120.00017 * 299.99761 * 12 10 9 14 14 C 1.36938 * 119.99778 * 119.99967 * 12 10 9 15 15 H 1.07995 * 120.00233 * 24.10582 * 14 12 10 16 16 C 1.38818 * 119.99759 * 204.10131 * 14 12 10 17 17 N 1.31617 * 119.99957 * 9.70935 * 16 14 12 18 18 Si 1.86797 * 119.99842 * 189.71516 * 16 14 12 19 19 H 1.48504 * 109.47179 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47262 * 120.00069 * 18 16 14 21 21 H 1.48499 * 109.47118 * 239.99841 * 18 16 14 22 22 C 1.46928 * 120.62912 * 184.33261 * 6 4 2 23 23 C 1.50701 * 109.47058 * 240.00219 * 2 1 3 24 24 C 1.38234 * 119.99900 * 299.72783 * 23 2 1 25 25 C 1.38237 * 119.99648 * 179.79165 * 24 23 2 26 26 C 1.38240 * 120.00192 * 0.45877 * 25 24 23 27 27 C 1.38237 * 119.99746 * 359.77462 * 26 25 24 28 28 C 1.38231 * 120.00166 * 0.02562 * 27 26 25 29 29 H 1.09000 * 109.47267 * 304.70182 * 1 2 3 30 30 H 1.09002 * 109.46988 * 64.70212 * 1 2 3 31 31 H 1.08994 * 109.47011 * 184.69623 * 1 2 3 32 32 H 1.09002 * 109.59114 * 246.15188 * 7 6 4 33 33 H 1.09003 * 109.59070 * 6.58085 * 7 6 4 34 34 H 1.09000 * 109.49910 * 174.58356 * 8 7 6 35 35 H 1.08999 * 109.49237 * 294.65406 * 8 7 6 36 36 H 1.09005 * 109.45996 * 58.65707 * 9 8 7 37 37 H 1.09004 * 109.46114 * 178.61495 * 9 8 7 38 38 H 1.09000 * 109.46953 * 95.21504 * 13 12 10 39 39 H 1.09005 * 109.47403 * 215.21125 * 13 12 10 40 40 H 1.08997 * 109.47033 * 335.21188 * 13 12 10 41 41 H 0.96996 * 119.99880 * 179.97438 * 17 16 14 42 42 H 1.08999 * 109.58867 * 353.42054 * 22 6 4 43 43 H 1.08999 * 109.58569 * 113.84698 * 22 6 4 44 44 H 1.07996 * 120.00298 * 359.97438 * 24 23 2 45 45 H 1.08001 * 120.00043 * 180.24841 * 25 24 23 46 46 H 1.07999 * 119.99947 * 179.78763 * 26 25 24 47 47 H 1.07997 * 119.99877 * 180.02562 * 27 26 25 48 48 H 1.08001 * 120.00181 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 1.3085 -1.4825 1.8228 6 7 3.2841 -0.4837 1.6757 7 6 4.1355 0.5268 1.0333 8 6 4.6462 1.4949 2.1052 9 6 5.3402 0.7014 3.2146 10 6 4.3370 -0.2539 3.8650 11 1 3.5005 0.3166 4.2686 12 7 4.9942 -0.9904 4.9475 13 6 6.1533 -1.8383 4.6582 14 6 4.5251 -0.8862 6.2298 15 1 3.4965 -0.6090 6.4076 16 6 5.3715 -1.1370 7.3011 17 7 6.6633 -1.2863 7.0981 18 14 4.6770 -1.2627 9.0306 19 1 3.2068 -1.0577 8.9898 20 1 4.9746 -2.6069 9.5871 21 1 5.2977 -0.2227 9.8900 22 6 3.8209 -1.2379 2.8167 23 6 2.0324 -0.7104 -1.2305 24 6 1.7031 -2.0354 -1.4464 25 6 2.1603 -2.6858 -2.5774 26 6 2.9547 -2.0138 -3.4875 27 6 3.2880 -0.6901 -3.2691 28 6 2.8273 -0.0386 -2.1403 29 1 -0.3634 0.5850 0.8449 30 1 -0.3633 0.4392 -0.9291 31 1 -0.3633 -1.0242 0.0841 32 1 4.9813 0.0380 0.5497 33 1 3.5552 1.0758 0.2918 34 1 5.3553 2.1916 1.6581 35 1 3.8065 2.0492 2.5245 36 1 6.1646 0.1283 2.7900 37 1 5.7262 1.3898 3.9665 38 1 7.0692 -1.2761 4.8400 39 1 6.1317 -2.7161 5.3041 40 1 6.1215 -2.1538 3.6154 41 1 7.2548 -1.4612 7.8467 42 1 3.0329 -1.8530 3.2514 43 1 4.6404 -1.8736 2.4814 44 1 1.0862 -2.5617 -0.7332 45 1 1.8997 -3.7199 -2.7481 46 1 3.3147 -2.5229 -4.3693 47 1 3.9082 -0.1650 -3.9803 48 1 3.0881 0.9955 -1.9694 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027656021.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:33 Heat of formation + Delta-G solvation = 10.803250 kcal Electronic energy + Delta-G solvation = -27304.282255 eV Core-core repulsion = 23745.549661 eV Total energy + Delta-G solvation = -3558.732594 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.189 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.54952 -39.02567 -37.46414 -35.08770 -34.18877 -32.21268 -31.30711 -31.07925 -29.53839 -28.80094 -26.01827 -25.69827 -24.23959 -23.33480 -22.74479 -21.82098 -21.43928 -19.29741 -18.46525 -17.33892 -16.97033 -16.69932 -15.77157 -15.67014 -14.90790 -14.82791 -14.64275 -14.06006 -13.98393 -13.79173 -13.60648 -13.45740 -13.41019 -12.92032 -12.65676 -12.49489 -12.41503 -12.25430 -12.07309 -11.96952 -11.61505 -11.17300 -11.13246 -10.98076 -10.86897 -10.81507 -10.59256 -10.37411 -10.27433 -10.07987 -9.86715 -9.79119 -9.59329 -9.09058 -8.81860 -8.59067 -8.29890 -6.71897 -5.69919 -3.18228 1.13234 1.23008 2.79746 3.19293 3.39662 3.47022 3.49791 3.61111 4.50478 4.51785 4.53853 4.66916 4.81462 4.89906 4.94191 5.00692 5.15855 5.22624 5.30611 5.33416 5.41228 5.47405 5.54994 5.61159 5.66767 5.74443 5.80265 5.84060 5.87324 5.90170 6.01965 6.10339 6.18929 6.25027 6.27775 6.34950 6.40904 6.41918 6.54413 6.68763 6.80912 6.82240 6.96969 7.02833 7.40987 7.66938 7.76479 7.84074 8.37198 8.44131 9.26165 9.88089 10.37088 11.34319 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.021411 B = 0.003221 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.452163 B = 8692.090994 C = 8964.983692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.073 4.073 3 H 0.099 0.901 4 C 0.520 3.480 5 O -0.540 6.540 6 N -0.601 5.601 7 C 0.108 3.892 8 C -0.133 4.133 9 C -0.131 4.131 10 C 0.170 3.830 11 H 0.064 0.936 12 N -0.593 5.593 13 C 0.163 3.837 14 C -0.253 4.253 15 H 0.068 0.932 16 C 0.003 3.997 17 N -0.908 5.908 18 Si 0.905 3.095 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.290 1.290 22 C 0.097 3.903 23 C -0.072 4.072 24 C -0.105 4.105 25 C -0.118 4.118 26 C -0.122 4.122 27 C -0.120 4.120 28 C -0.113 4.113 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.031 0.969 39 H 0.041 0.959 40 H -0.003 1.003 41 H 0.251 0.749 42 H 0.089 0.911 43 H 0.062 0.938 44 H 0.126 0.874 45 H 0.122 0.878 46 H 0.120 0.880 47 H 0.122 0.878 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.457 4.136 -22.114 23.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.095 4.095 3 H 0.117 0.883 4 C 0.307 3.693 5 O -0.417 6.417 6 N -0.334 5.334 7 C -0.015 4.015 8 C -0.172 4.172 9 C -0.171 4.171 10 C 0.060 3.940 11 H 0.082 0.918 12 N -0.315 5.315 13 C 0.018 3.982 14 C -0.383 4.383 15 H 0.086 0.914 16 C -0.195 4.195 17 N -0.553 5.553 18 Si 0.735 3.265 19 H -0.203 1.203 20 H -0.216 1.216 21 H -0.217 1.217 22 C -0.027 4.027 23 C -0.072 4.072 24 C -0.123 4.123 25 C -0.136 4.136 26 C -0.140 4.140 27 C -0.138 4.138 28 C -0.131 4.131 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.050 0.950 39 H 0.060 0.940 40 H 0.016 0.984 41 H 0.061 0.939 42 H 0.107 0.893 43 H 0.080 0.920 44 H 0.144 0.856 45 H 0.140 0.860 46 H 0.138 0.862 47 H 0.140 0.860 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.693 3.653 -21.626 22.931 hybrid contribution 0.027 -0.021 0.972 0.972 sum -6.666 3.632 -20.654 22.005 Atomic orbital electron populations 1.21652 0.91689 1.03620 1.01831 1.20372 0.98263 0.99801 0.91039 0.88286 1.20333 0.81342 0.82484 0.85135 1.90683 1.55312 1.37399 1.58336 1.48148 1.13485 1.38848 1.32889 1.21799 0.94540 0.89910 0.95263 1.21954 1.00602 0.97722 0.96929 1.22113 0.99196 0.98941 0.96873 1.20494 0.94330 0.90991 0.88164 0.91796 1.43877 1.33875 1.50587 1.03155 1.20791 0.89877 0.94242 0.93245 1.19284 0.93990 1.42983 0.82030 0.91405 1.25050 0.95070 1.01423 0.97975 1.70064 1.01849 1.53615 1.29814 0.86171 0.78382 0.77291 0.84655 1.20281 1.21624 1.21744 1.22320 0.98938 0.95441 0.85966 1.19482 0.98226 0.94447 0.95074 1.21138 0.99585 0.94157 0.97460 1.21158 0.98031 0.99941 0.94442 1.21168 0.98518 0.94911 0.99425 1.21103 1.00132 0.94973 0.97559 1.21047 0.97723 0.99872 0.94452 0.91862 0.91988 0.91171 0.91542 0.90403 0.91294 0.91785 0.92494 0.91479 0.95024 0.94016 0.98449 0.93855 0.89269 0.91975 0.85632 0.86038 0.86192 0.86004 0.85931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.40 8.52 37.16 0.32 -1.08 16 2 C -0.07 -0.84 2.10 -92.92 -0.20 -1.03 16 3 H 0.10 0.93 6.01 -51.93 -0.31 0.62 16 4 C 0.52 8.12 6.46 -10.99 -0.07 8.05 16 5 O -0.54 -10.44 15.35 5.56 0.09 -10.36 16 6 N -0.60 -9.35 2.98 -173.03 -0.52 -9.86 16 7 C 0.11 1.31 6.24 -3.71 -0.02 1.29 16 8 C -0.13 -1.74 6.08 -26.61 -0.16 -1.90 16 9 C -0.13 -2.31 5.15 -26.69 -0.14 -2.45 16 10 C 0.17 3.51 2.72 -68.03 -0.19 3.32 16 11 H 0.06 1.41 7.87 -51.93 -0.41 1.00 16 12 N -0.59 -14.92 2.81 -173.60 -0.49 -15.41 16 13 C 0.16 4.01 8.02 59.84 0.48 4.49 16 14 C -0.25 -7.06 9.59 -15.06 -0.14 -7.21 16 15 H 0.07 1.89 7.82 -52.49 -0.41 1.48 16 16 C 0.00 0.08 5.17 -17.43 -0.09 -0.01 16 17 N -0.91 -26.52 10.60 55.49 0.59 -25.93 16 18 Si 0.90 22.21 29.56 -169.99 -5.03 17.19 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 C 0.10 1.83 5.78 -3.93 -0.02 1.81 16 23 C -0.07 -0.78 4.65 -104.62 -0.49 -1.27 16 24 C -0.11 -1.22 8.86 -39.58 -0.35 -1.57 16 25 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 26 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 27 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 28 C -0.11 -1.03 9.24 -39.58 -0.37 -1.40 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.84 7.15 -51.93 -0.37 0.47 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.08 0.74 4.72 -51.93 -0.24 0.49 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.06 1.01 7.72 -51.93 -0.40 0.61 16 37 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.03 0.84 7.32 -51.93 -0.38 0.46 16 39 H 0.04 1.11 7.33 -51.93 -0.38 0.73 16 40 H 0.00 -0.06 6.35 -51.93 -0.33 -0.39 16 41 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.09 1.92 7.00 -51.93 -0.36 1.56 16 43 H 0.06 1.18 6.48 -51.93 -0.34 0.85 16 44 H 0.13 1.56 7.64 -52.49 -0.40 1.16 16 45 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 46 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 47 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 48 H 0.12 0.86 7.68 -52.49 -0.40 0.45 16 LS Contribution 373.76 15.07 5.63 5.63 Total: -1.00 -31.97 373.76 -10.04 -42.01 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -7.68 Total: 0.15 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -2.63 Total: -3.42 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: -0.42 Total: -51.20 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.09 Total: -10.36 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.03 Total: 17.19 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.97 -10.04 -42.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027656021.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.812 kcal (2) G-P(sol) polarization free energy of solvation -31.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds