Wall clock time and date at job start Tue Mar 31 2020 12:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.46912 * 2 1 4 4 C 1.53002 * 109.47191 * 120.00499 * 2 1 3 5 5 C 1.50701 * 109.46678 * 294.99850 * 4 2 1 6 6 C 1.38237 * 119.99925 * 269.72446 * 5 4 2 7 7 C 1.38240 * 119.99839 * 179.77107 * 6 5 4 8 8 C 1.38229 * 119.99896 * 0.50711 * 7 6 5 9 9 C 1.38236 * 120.00087 * 359.74567 * 8 7 6 10 10 C 1.38227 * 120.00234 * 0.02562 * 9 8 7 11 11 C 1.50694 * 109.46973 * 240.00252 * 2 1 3 12 12 O 1.21286 * 120.00256 * 240.00238 * 11 2 1 13 13 N 1.34779 * 120.00090 * 59.99868 * 11 2 1 14 14 C 1.47738 * 125.82166 * 5.15818 * 13 11 2 15 15 C 1.54913 * 104.84514 * 155.82749 * 14 13 11 16 16 C 1.55153 * 101.57658 * 37.09220 * 15 14 13 17 17 C 1.47022 * 125.65159 * 185.24591 * 13 11 2 18 18 H 1.09003 * 109.88445 * 300.60361 * 17 13 11 19 19 C 1.53001 * 109.88013 * 61.60860 * 17 13 11 20 20 N 1.46504 * 109.47419 * 183.64384 * 19 17 13 21 21 C 1.36936 * 120.00450 * 175.01893 * 20 19 17 22 22 H 1.08000 * 119.99343 * 359.97438 * 21 20 19 23 23 C 1.38807 * 119.99939 * 180.02562 * 21 20 19 24 24 N 1.31618 * 120.00301 * 359.97438 * 23 21 20 25 25 Si 1.86808 * 119.99751 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.46883 * 269.99618 * 25 23 21 27 27 H 1.48495 * 109.46842 * 29.99741 * 25 23 21 28 28 H 1.48503 * 109.46775 * 149.99765 * 25 23 21 29 29 H 1.08998 * 109.46778 * 299.99814 * 1 2 3 30 30 H 1.08994 * 109.47002 * 59.99387 * 1 2 3 31 31 H 1.08995 * 109.46912 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47095 * 54.99685 * 4 2 1 33 33 H 1.08990 * 109.46952 * 174.99976 * 4 2 1 34 34 H 1.08001 * 119.99947 * 0.02562 * 6 5 4 35 35 H 1.08000 * 119.99543 * 180.23048 * 7 6 5 36 36 H 1.08004 * 120.00360 * 179.72563 * 8 7 6 37 37 H 1.08005 * 119.99700 * 179.97438 * 9 8 7 38 38 H 1.08006 * 120.00300 * 179.97438 * 10 9 8 39 39 H 1.09002 * 110.29059 * 37.02321 * 14 13 11 40 40 H 1.09004 * 110.43501 * 274.70485 * 14 13 11 41 41 H 1.08998 * 111.00100 * 279.02422 * 15 14 13 42 42 H 1.09002 * 111.03942 * 155.18424 * 15 14 13 43 43 H 1.09006 * 110.71957 * 206.13674 * 16 15 14 44 44 H 1.09000 * 110.72066 * 82.86713 * 16 15 14 45 45 H 1.09004 * 109.47172 * 63.64639 * 19 17 13 46 46 H 1.09003 * 109.47472 * 303.64328 * 19 17 13 47 47 H 0.97003 * 119.99610 * 355.01793 * 20 19 17 48 48 H 0.97001 * 120.00036 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 1.2492 5 6 1.6414 0.0569 2.4765 6 6 2.4841 1.0289 2.9826 7 6 2.1162 1.7461 4.1056 8 6 0.9105 1.4841 4.7288 9 6 0.0702 0.5085 4.2258 10 6 0.4358 -0.2054 3.1000 11 6 2.0324 -0.7103 -1.2305 12 8 2.7296 -1.6965 -1.1193 13 7 1.7067 -0.2498 -2.4546 14 6 0.9601 0.9925 -2.7406 15 6 1.3783 1.3844 -4.1798 16 6 1.4886 -0.0051 -4.8613 17 6 2.0343 -0.9023 -3.7307 18 1 3.1151 -1.0050 -3.8279 19 6 1.3732 -2.2806 -3.7951 20 7 1.7754 -2.9580 -5.0303 21 6 1.3880 -4.2513 -5.2594 22 1 0.7864 -4.7721 -4.5292 23 6 1.7696 -4.8932 -6.4295 24 7 2.5033 -4.2586 -7.3191 25 14 1.2418 -6.6577 -6.7416 26 1 2.2643 -7.5845 -6.1934 27 1 -0.0618 -6.9094 -6.0765 28 1 1.1033 -6.8818 -8.2031 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6055 -1.7199 1.2950 33 1 3.1263 -0.7996 1.2055 34 1 3.4280 1.2308 2.4981 35 1 2.7730 2.5081 4.4988 36 1 0.6250 2.0413 5.6088 37 1 -0.8717 0.3035 4.7130 38 1 -0.2205 -0.9680 2.7073 39 1 1.2442 1.7748 -2.0368 40 1 -0.1136 0.8106 -2.6939 41 1 2.3400 1.8976 -4.1811 42 1 0.6117 1.9944 -4.6577 43 1 2.1873 0.0298 -5.6973 44 1 0.5090 -0.3521 -5.1903 45 1 0.2894 -2.1648 -3.7806 46 1 1.6866 -2.8745 -2.9365 47 1 2.3161 -2.4903 -5.6859 48 1 2.7696 -4.7071 -8.1369 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753601989.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:57 Heat of formation + Delta-G solvation = -7.005611 kcal Electronic energy + Delta-G solvation = -26375.049349 eV Core-core repulsion = 22815.544505 eV Total energy + Delta-G solvation = -3559.504844 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.38438 -39.42036 -37.49850 -35.10582 -34.39439 -31.95459 -31.29758 -31.14577 -30.56798 -28.62957 -26.90520 -25.19926 -24.28002 -22.83194 -22.49739 -21.97647 -21.20296 -20.20489 -18.66657 -17.41957 -16.94712 -16.63158 -16.18268 -15.56534 -15.33906 -15.20450 -14.54688 -14.44961 -13.84905 -13.70444 -13.58942 -13.52072 -13.39619 -13.00716 -12.92109 -12.70539 -12.50079 -12.47246 -12.41394 -11.97333 -11.55260 -11.38791 -11.27835 -11.14393 -11.13575 -10.96100 -10.87715 -10.81124 -10.50949 -10.34997 -10.00920 -9.71877 -9.48606 -9.13288 -8.89528 -8.80799 -8.39051 -6.86357 -5.71404 -2.99412 1.12019 1.16996 2.81658 3.10043 3.48020 3.52902 3.54412 3.57006 4.35172 4.60728 4.61671 4.67163 4.71266 4.73661 4.81210 4.86454 4.90355 5.00956 5.05110 5.23307 5.28102 5.31553 5.36781 5.48151 5.57451 5.60503 5.62936 5.64533 5.66842 5.79487 5.82508 5.85371 5.96123 6.03732 6.05733 6.09509 6.12452 6.20908 6.24460 6.28147 6.44771 6.46170 6.58626 6.78355 6.86940 7.00888 7.73067 7.76984 8.37873 8.48020 9.58646 10.15368 10.51106 11.51723 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.019193 B = 0.002711 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.531510 B =10327.400413 C =11194.899237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.097 4.097 3 H 0.093 0.907 4 C -0.065 4.065 5 C -0.074 4.074 6 C -0.117 4.117 7 C -0.120 4.120 8 C -0.128 4.128 9 C -0.120 4.120 10 C -0.114 4.114 11 C 0.529 3.471 12 O -0.529 6.529 13 N -0.611 5.611 14 C 0.100 3.900 15 C -0.135 4.135 16 C -0.121 4.121 17 C 0.129 3.871 18 H 0.076 0.924 19 C 0.148 3.852 20 N -0.728 5.728 21 C -0.233 4.233 22 H 0.069 0.931 23 C -0.015 4.015 24 N -0.935 5.935 25 Si 0.907 3.093 26 H -0.290 1.290 27 H -0.282 1.282 28 H -0.292 1.292 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.123 0.877 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.014 0.986 46 H 0.035 0.965 47 H 0.383 0.617 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.771 18.510 20.060 27.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.118 4.118 3 H 0.111 0.889 4 C -0.102 4.102 5 C -0.074 4.074 6 C -0.135 4.135 7 C -0.138 4.138 8 C -0.146 4.146 9 C -0.138 4.138 10 C -0.132 4.132 11 C 0.317 3.683 12 O -0.405 6.405 13 N -0.346 5.346 14 C -0.023 4.023 15 C -0.173 4.173 16 C -0.159 4.159 17 C 0.026 3.974 18 H 0.094 0.906 19 C 0.020 3.980 20 N -0.373 5.373 21 C -0.364 4.364 22 H 0.087 0.913 23 C -0.211 4.211 24 N -0.584 5.584 25 Si 0.739 3.261 26 H -0.217 1.217 27 H -0.208 1.208 28 H -0.218 1.218 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.141 0.859 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.100 0.900 43 H 0.102 0.898 44 H 0.101 0.899 45 H 0.032 0.968 46 H 0.053 0.947 47 H 0.217 0.783 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.450 17.774 20.223 27.289 hybrid contribution -0.104 -0.774 -0.444 0.898 sum -4.553 17.000 19.779 26.475 Atomic orbital electron populations 1.21963 0.92929 1.03098 1.02928 1.21187 0.97801 1.00454 0.92392 0.88883 1.20443 1.02319 0.98246 0.89237 1.19931 0.94454 0.96495 0.96558 1.21106 0.99670 0.96127 0.96636 1.21136 0.96804 0.99725 0.96102 1.21130 0.94859 0.98471 1.00140 1.21153 0.99678 0.96441 0.96538 1.21133 0.96325 0.99976 0.95800 1.20225 0.80174 0.84671 0.83239 1.90752 1.37337 1.26464 1.85950 1.48594 1.56217 1.24233 1.05569 1.22442 0.96377 0.86316 0.97144 1.22812 1.02079 0.97880 0.94558 1.22669 1.03058 0.93050 0.97154 1.21809 1.00152 0.93765 0.81653 0.90638 1.20921 0.95590 0.90279 0.91240 1.42210 1.63688 1.12840 1.18527 1.19214 1.26274 0.89092 1.01869 0.91298 1.24720 1.00809 0.98414 0.97154 1.69656 1.41755 1.36656 1.10352 0.86174 0.78092 0.84923 0.76943 1.21724 1.20813 1.21791 0.91283 0.91575 0.91923 0.90028 0.89965 0.86076 0.86237 0.86363 0.86196 0.85926 0.90961 0.91150 0.90848 0.90003 0.89814 0.89921 0.96825 0.94731 0.78325 0.93584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 8.61 37.16 0.32 -1.12 16 2 C -0.10 -1.07 2.10 -91.77 -0.19 -1.26 16 3 H 0.09 0.88 7.78 -51.93 -0.40 0.48 16 4 C -0.06 -0.72 4.19 -27.88 -0.12 -0.84 16 5 C -0.07 -0.72 4.71 -104.62 -0.49 -1.21 16 6 C -0.12 -1.06 9.70 -39.58 -0.38 -1.44 16 7 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 8 C -0.13 -0.99 10.05 -39.59 -0.40 -1.39 16 9 C -0.12 -0.97 10.05 -39.59 -0.40 -1.36 16 10 C -0.11 -1.03 7.97 -39.58 -0.32 -1.34 16 11 C 0.53 8.18 6.93 -10.99 -0.08 8.11 16 12 O -0.53 -10.60 15.11 5.55 0.08 -10.51 16 13 N -0.61 -8.96 3.06 -162.76 -0.50 -9.45 16 14 C 0.10 1.05 5.31 -2.35 -0.01 1.03 16 15 C -0.14 -1.41 7.09 -24.58 -0.17 -1.58 16 16 C -0.12 -1.77 6.01 -24.90 -0.15 -1.92 16 17 C 0.13 2.28 2.93 -66.96 -0.20 2.09 16 18 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 19 C 0.15 3.28 5.64 -4.04 -0.02 3.26 16 20 N -0.73 -19.30 5.44 -59.90 -0.33 -19.62 16 21 C -0.23 -6.83 9.99 -15.06 -0.15 -6.98 16 22 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 23 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 24 N -0.94 -28.84 13.06 55.49 0.72 -28.11 16 25 Si 0.91 23.14 29.55 -169.99 -5.02 18.12 16 26 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 27 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 28 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 29 H 0.07 0.57 6.27 -51.93 -0.33 0.25 16 30 H 0.07 0.58 5.23 -51.93 -0.27 0.31 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.99 8.08 -51.93 -0.42 0.57 16 33 H 0.08 0.99 7.90 -51.93 -0.41 0.58 16 34 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 36 H 0.12 0.68 8.06 -52.48 -0.42 0.25 16 37 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 38 H 0.12 1.00 8.04 -52.48 -0.42 0.58 16 39 H 0.07 0.59 7.53 -51.93 -0.39 0.20 16 40 H 0.07 0.68 6.92 -51.93 -0.36 0.32 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.08 1.30 7.79 -51.93 -0.40 0.89 16 45 H 0.01 0.31 8.06 -51.93 -0.42 -0.11 16 46 H 0.03 0.86 6.92 -51.93 -0.36 0.50 16 47 H 0.38 10.42 7.40 -40.82 -0.30 10.12 16 48 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 381.37 15.07 5.75 5.75 Total: -1.00 -34.35 381.37 -10.38 -44.73 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -7.84 Total: 6.99 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -3.25 Total: -7.88 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: -0.10 Total: -57.19 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.08 Total: -10.51 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -5.02 Total: 18.12 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.35 -10.38 -44.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753601989.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.728 kcal (2) G-P(sol) polarization free energy of solvation -34.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds