Wall clock time and date at job start Tue Mar 31 2020 12:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46496 * 120.00061 * 2 1 4 4 C 1.50698 * 109.47594 * 270.00336 * 3 2 1 5 5 H 1.07998 * 119.99902 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99943 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99924 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99639 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47222 * 359.97438 * 8 6 4 10 10 H 1.48489 * 109.47275 * 120.00004 * 8 6 4 11 11 H 1.48497 * 109.46819 * 239.99842 * 8 6 4 12 12 C 1.39671 * 119.99615 * 180.02562 * 2 1 3 13 13 C 1.38906 * 120.07967 * 359.97438 * 12 2 1 14 14 C 1.38102 * 119.92753 * 179.97438 * 13 12 2 15 15 C 1.38287 * 120.07615 * 0.02562 * 14 13 12 16 16 C 1.50702 * 119.92770 * 180.02562 * 15 14 13 17 17 N 1.46898 * 109.47286 * 89.99887 * 16 15 14 18 18 C 1.46896 * 110.99827 * 180.02562 * 17 16 15 19 19 C 1.53003 * 109.47213 * 180.02562 * 18 17 16 20 20 C 1.52998 * 110.05489 * 58.57768 * 19 18 17 21 21 C 1.53869 * 110.03485 * 179.97438 * 19 18 17 22 22 C 1.54270 * 106.63967 * 119.25869 * 21 19 18 23 23 C 1.55005 * 104.13720 * 23.62421 * 22 21 19 24 24 C 1.54268 * 110.02859 * 297.16878 * 19 18 17 25 25 C 1.38286 * 120.14513 * 0.27190 * 15 14 13 26 26 C 1.38107 * 120.07771 * 359.45259 * 25 15 14 27 27 H 1.08997 * 109.46979 * 269.99672 * 1 2 3 28 28 H 1.09002 * 109.47266 * 29.99543 * 1 2 3 29 29 H 1.09001 * 109.46907 * 149.99773 * 1 2 3 30 30 H 1.09006 * 109.46604 * 30.00656 * 3 2 1 31 31 H 1.09007 * 109.46949 * 149.99705 * 3 2 1 32 32 H 0.96993 * 119.99201 * 180.02562 * 7 6 4 33 33 H 1.08006 * 120.03566 * 359.96142 * 13 12 2 34 34 H 1.08001 * 119.96534 * 179.97438 * 14 13 12 35 35 H 1.09004 * 109.46819 * 329.99790 * 16 15 14 36 36 H 1.09005 * 109.46687 * 210.00208 * 16 15 14 37 37 H 1.00901 * 110.99745 * 303.95241 * 17 16 15 38 38 H 1.09003 * 109.47390 * 59.99967 * 18 17 16 39 39 H 1.08997 * 109.47392 * 299.99702 * 18 17 16 40 40 H 1.08998 * 109.47417 * 181.41792 * 20 19 18 41 41 H 1.08995 * 109.47912 * 301.42187 * 20 19 18 42 42 H 1.09003 * 109.46563 * 61.42261 * 20 19 18 43 43 H 1.09002 * 110.03268 * 238.56956 * 21 19 18 44 44 H 1.08995 * 110.03391 * 359.95262 * 21 19 18 45 45 H 1.08998 * 110.48170 * 142.31277 * 22 21 19 46 46 H 1.08998 * 110.48753 * 264.95665 * 22 21 19 47 47 H 1.09001 * 110.74691 * 203.73447 * 23 22 21 48 48 H 1.09005 * 110.92280 * 80.43999 * 23 22 21 49 49 H 1.09003 * 110.49208 * 335.77788 * 24 19 18 50 50 H 1.08998 * 110.48781 * 98.29484 * 24 19 18 51 51 H 1.08003 * 119.96118 * 179.70247 * 25 15 14 52 52 H 1.07997 * 120.03805 * 180.26938 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7039 -1.4208 5 1 2.0974 1.0964 -2.2417 6 6 3.1269 2.8776 -1.6726 7 7 3.5543 3.6176 -0.6729 8 14 3.4376 3.4173 -3.4337 9 1 2.8596 2.4174 -4.3671 10 1 2.8007 4.7383 -3.6663 11 1 4.9001 3.5248 -3.6677 12 6 2.1633 -1.2096 -0.0005 13 6 1.4704 -2.4135 -0.0005 14 6 2.1640 -3.6077 -0.0016 15 6 3.5468 -3.6060 -0.0021 16 6 4.3003 -4.9111 -0.0039 17 7 4.5446 -5.3337 -1.3894 18 6 5.2783 -6.6056 -1.4302 19 6 5.5140 -7.0120 -2.8864 20 6 6.3011 -5.9208 -3.6148 21 6 6.2828 -8.3436 -2.9442 22 6 5.3736 -9.3468 -3.6836 23 6 4.4351 -8.4524 -4.5332 24 6 4.1639 -7.2509 -3.5934 25 6 4.2398 -2.4093 0.0041 26 6 3.5524 -1.2114 -0.0006 27 1 -0.3633 -0.0001 1.0276 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5139 30 1 1.6084 2.0283 0.5140 31 1 3.1500 1.1383 0.5139 32 1 4.0311 4.4434 -0.8501 33 1 0.3903 -2.4156 0.0005 34 1 1.6258 -4.5441 -0.0012 35 1 3.7114 -5.6713 0.5094 36 1 5.2530 -4.7813 0.5098 37 1 3.6800 -5.3986 -1.9054 38 1 4.6958 -7.3774 -0.9270 39 1 6.2377 -6.4881 -0.9265 40 1 6.4418 -6.2082 -4.6567 41 1 5.7492 -4.9820 -3.5683 42 1 7.2733 -5.7946 -3.1382 43 1 7.2164 -8.2122 -3.4913 44 1 6.4888 -8.6999 -1.9350 45 1 5.9668 -9.9972 -4.3264 46 1 4.7971 -9.9363 -2.9707 47 1 3.5087 -8.9771 -4.7667 48 1 4.9319 -8.1238 -5.4462 49 1 3.3916 -7.5022 -2.8664 50 1 3.8735 -6.3716 -4.1685 51 1 5.3198 -2.4114 0.0085 52 1 4.0943 -0.2772 -0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066594381.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:25 Heat of formation + Delta-G solvation = 8.587038 kcal Electronic energy + Delta-G solvation = -26185.104652 eV Core-core repulsion = 22762.109051 eV Total energy + Delta-G solvation = -3422.995602 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.48669 -38.90760 -36.34565 -34.79834 -32.71461 -31.61742 -30.41567 -29.51077 -28.95891 -27.78998 -26.58023 -25.36772 -24.18730 -23.22486 -22.01765 -21.51204 -20.83205 -19.57453 -18.73404 -16.72970 -16.46063 -16.08437 -15.55889 -15.44698 -14.98360 -14.56255 -14.31566 -14.25237 -13.86648 -13.72943 -13.65552 -13.20970 -13.02921 -12.87811 -12.80521 -12.30444 -12.15447 -12.12212 -11.77410 -11.56789 -11.38464 -11.34715 -11.24710 -11.24098 -11.02153 -10.88139 -10.76318 -10.68532 -10.65841 -10.55145 -10.39026 -10.24451 -9.87065 -9.72845 -8.82910 -8.49917 -8.30061 -8.23012 -6.45214 -6.00596 -4.16268 2.13742 2.24401 3.26541 3.34697 3.39920 4.12988 4.19087 4.37583 4.42299 4.43363 4.56020 4.76725 5.07027 5.09854 5.21468 5.22619 5.22985 5.30268 5.33083 5.40203 5.45456 5.55781 5.58429 5.63775 5.64927 5.67265 5.72138 5.79712 5.81957 5.86811 5.88141 5.99682 6.04414 6.09650 6.09980 6.18095 6.22460 6.28967 6.40971 6.43708 6.46283 6.66160 6.94575 7.02390 7.13246 7.20533 7.28988 7.39517 7.49356 7.63046 7.82429 8.16683 8.28127 8.50362 8.93175 9.50658 10.96618 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014232 B = 0.002675 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.921203 B =10463.836849 C =11460.832151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.616 5.616 3 C 0.249 3.751 4 C -0.529 4.529 5 H 0.060 0.940 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.282 1.282 12 C 0.241 3.759 13 C -0.222 4.222 14 C -0.069 4.069 15 C -0.172 4.172 16 C 0.116 3.884 17 N -0.681 5.681 18 C 0.070 3.930 19 C -0.062 4.062 20 C -0.130 4.130 21 C -0.116 4.116 22 C -0.124 4.124 23 C -0.124 4.124 24 C -0.118 4.118 25 C -0.051 4.051 26 C -0.188 4.188 27 H 0.035 0.965 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.030 0.970 31 H 0.036 0.964 32 H 0.263 0.737 33 H 0.112 0.888 34 H 0.103 0.897 35 H 0.025 0.975 36 H 0.070 0.930 37 H 0.340 0.660 38 H 0.024 0.976 39 H 0.068 0.932 40 H 0.045 0.955 41 H 0.071 0.929 42 H 0.050 0.950 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.062 0.938 47 H 0.062 0.938 48 H 0.066 0.934 49 H 0.061 0.939 50 H 0.070 0.930 51 H 0.111 0.889 52 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.559 -22.890 -1.939 23.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.322 5.322 3 C 0.129 3.871 4 C -0.568 4.568 5 H 0.078 0.922 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.723 3.277 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.208 1.208 12 C 0.134 3.866 13 C -0.245 4.245 14 C -0.088 4.088 15 C -0.175 4.175 16 C -0.012 4.012 17 N -0.312 5.312 18 C -0.059 4.059 19 C -0.062 4.062 20 C -0.187 4.187 21 C -0.155 4.155 22 C -0.162 4.162 23 C -0.162 4.162 24 C -0.155 4.155 25 C -0.070 4.070 26 C -0.211 4.211 27 H 0.053 0.947 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.048 0.952 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.130 0.870 34 H 0.122 0.878 35 H 0.043 0.957 36 H 0.089 0.911 37 H 0.159 0.841 38 H 0.042 0.958 39 H 0.087 0.913 40 H 0.064 0.936 41 H 0.090 0.910 42 H 0.069 0.931 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.081 0.919 47 H 0.081 0.919 48 H 0.084 0.916 49 H 0.079 0.921 50 H 0.089 0.911 51 H 0.129 0.871 52 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.104 -22.100 -1.947 22.285 hybrid contribution -0.539 -0.130 -0.720 0.909 sum 1.565 -22.229 -2.667 22.443 Atomic orbital electron populations 1.21466 0.81561 1.01893 0.99636 1.47097 1.04349 1.04639 1.76073 1.19290 0.92081 0.78746 0.97006 1.21614 1.36203 1.06359 0.92661 0.92214 1.24967 0.95431 0.96311 0.97411 1.69941 1.38444 1.14368 1.30689 0.86468 0.78073 0.78419 0.84694 1.19699 1.20985 1.20819 1.17956 0.91535 0.85950 0.91143 1.20508 0.98905 0.91400 1.13699 1.20495 0.93343 0.96440 0.98529 1.19178 0.93063 0.93924 1.11289 1.20639 0.98509 0.93279 0.88809 1.60549 1.26921 1.29994 1.13773 1.22074 0.98498 0.89993 0.95331 1.21199 0.95310 0.94954 0.94761 1.21782 0.99633 0.98819 0.98479 1.22262 0.98471 0.94323 1.00399 1.22363 0.97726 0.97497 0.98582 1.22504 0.99126 0.96343 0.98214 1.22491 0.96477 0.98325 0.98222 1.20638 0.98724 0.91312 0.96328 1.20899 0.92644 0.98823 1.08688 0.94662 0.91474 0.92725 0.95235 0.94613 0.92717 0.87010 0.87848 0.95664 0.91142 0.84109 0.95769 0.91310 0.93602 0.90987 0.93139 0.91620 0.91969 0.91982 0.91937 0.91934 0.91560 0.92069 0.91099 0.87061 0.85107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.74 10.19 59.85 0.61 2.35 16 2 N -0.62 -13.30 2.99 -181.00 -0.54 -13.84 16 3 C 0.25 6.27 4.91 -5.20 -0.03 6.25 16 4 C -0.53 -14.54 9.39 -34.44 -0.32 -14.86 16 5 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 6 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 7 N -0.90 -25.78 13.29 55.43 0.74 -25.04 16 8 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 9 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 12 C 0.24 4.93 6.55 -83.79 -0.55 4.38 16 13 C -0.22 -3.88 9.21 -39.38 -0.36 -4.24 16 14 C -0.07 -1.07 9.69 -39.61 -0.38 -1.45 16 15 C -0.17 -2.66 5.40 -104.59 -0.56 -3.22 16 16 C 0.12 1.46 5.81 -4.98 -0.03 1.43 16 17 N -0.68 -8.05 5.68 -115.06 -0.65 -8.70 16 18 C 0.07 0.70 4.29 -3.82 -0.02 0.68 16 19 C -0.06 -0.56 0.74 -153.39 -0.11 -0.67 16 20 C -0.13 -1.31 7.99 37.16 0.30 -1.01 16 21 C -0.12 -0.92 6.11 -25.61 -0.16 -1.08 16 22 C -0.12 -0.90 6.84 -25.01 -0.17 -1.07 16 23 C -0.12 -0.96 6.91 -24.65 -0.17 -1.13 16 24 C -0.12 -1.03 4.91 -25.05 -0.12 -1.16 16 25 C -0.05 -0.89 9.69 -39.61 -0.38 -1.27 16 26 C -0.19 -3.85 9.21 -39.38 -0.36 -4.21 16 27 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 29 H 0.05 0.86 6.20 -51.93 -0.32 0.53 16 30 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 31 H 0.04 0.95 6.20 -51.93 -0.32 0.63 16 32 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 33 H 0.11 1.77 6.14 -52.48 -0.32 1.44 16 34 H 0.10 1.34 8.06 -52.49 -0.42 0.92 16 35 H 0.03 0.30 8.08 -51.93 -0.42 -0.12 16 36 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 37 H 0.34 4.04 7.71 -39.29 -0.30 3.74 16 38 H 0.02 0.23 8.12 -51.93 -0.42 -0.19 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.86 7.56 -51.93 -0.39 0.46 16 42 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.51 7.67 -51.93 -0.40 0.11 16 44 H 0.06 0.47 7.67 -51.93 -0.40 0.07 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 48 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.06 0.54 7.79 -51.93 -0.40 0.13 16 50 H 0.07 0.67 7.84 -51.93 -0.41 0.27 16 51 H 0.11 1.79 8.06 -52.48 -0.42 1.36 16 52 H 0.13 2.96 6.14 -52.49 -0.32 2.64 16 LS Contribution 404.82 15.07 6.10 6.10 Total: -1.00 -28.36 404.82 -11.77 -40.13 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -9.46 Total: 3.62 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: -2.92 Total: -18.71 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: -0.46 Total: -47.58 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -28.36 -11.77 -40.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066594381.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.713 kcal (2) G-P(sol) polarization free energy of solvation -28.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds