Wall clock time and date at job start Tue Mar 31 2020 12:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46496 * 120.00061 * 2 1 4 4 C 1.50698 * 109.47594 * 270.00336 * 3 2 1 5 5 H 1.07998 * 119.99902 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99943 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99924 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99639 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47222 * 359.97438 * 8 6 4 10 10 H 1.48489 * 109.47275 * 120.00004 * 8 6 4 11 11 H 1.48497 * 109.46819 * 239.99842 * 8 6 4 12 12 C 1.39671 * 119.99615 * 180.02562 * 2 1 3 13 13 C 1.38906 * 120.07967 * 359.97438 * 12 2 1 14 14 C 1.38102 * 119.92753 * 179.97438 * 13 12 2 15 15 C 1.38287 * 120.07615 * 0.02562 * 14 13 12 16 16 C 1.50702 * 119.92770 * 180.02562 * 15 14 13 17 17 N 1.46898 * 109.47286 * 89.99887 * 16 15 14 18 18 C 1.46896 * 110.99827 * 180.02562 * 17 16 15 19 19 C 1.53003 * 109.47213 * 180.02562 * 18 17 16 20 20 C 1.52998 * 110.05489 * 58.57768 * 19 18 17 21 21 C 1.53869 * 110.03485 * 179.97438 * 19 18 17 22 22 C 1.54270 * 106.63967 * 119.25869 * 21 19 18 23 23 C 1.55005 * 104.13720 * 23.62421 * 22 21 19 24 24 C 1.54268 * 110.02859 * 297.16878 * 19 18 17 25 25 C 1.38286 * 120.14513 * 0.27190 * 15 14 13 26 26 C 1.38107 * 120.07771 * 359.45259 * 25 15 14 27 27 H 1.08997 * 109.46979 * 269.99672 * 1 2 3 28 28 H 1.09002 * 109.47266 * 29.99543 * 1 2 3 29 29 H 1.09001 * 109.46907 * 149.99773 * 1 2 3 30 30 H 1.09006 * 109.46604 * 30.00656 * 3 2 1 31 31 H 1.09007 * 109.46949 * 149.99705 * 3 2 1 32 32 H 0.96993 * 119.99201 * 180.02562 * 7 6 4 33 33 H 1.08006 * 120.03566 * 359.96142 * 13 12 2 34 34 H 1.08001 * 119.96534 * 179.97438 * 14 13 12 35 35 H 1.09004 * 109.46819 * 329.99790 * 16 15 14 36 36 H 1.09005 * 109.46687 * 210.00208 * 16 15 14 37 37 H 1.00901 * 110.99745 * 303.95241 * 17 16 15 38 38 H 1.09003 * 109.47390 * 59.99967 * 18 17 16 39 39 H 1.08997 * 109.47392 * 299.99702 * 18 17 16 40 40 H 1.08998 * 109.47417 * 181.41792 * 20 19 18 41 41 H 1.08995 * 109.47912 * 301.42187 * 20 19 18 42 42 H 1.09003 * 109.46563 * 61.42261 * 20 19 18 43 43 H 1.09002 * 110.03268 * 238.56956 * 21 19 18 44 44 H 1.08995 * 110.03391 * 359.95262 * 21 19 18 45 45 H 1.08998 * 110.48170 * 142.31277 * 22 21 19 46 46 H 1.08998 * 110.48753 * 264.95665 * 22 21 19 47 47 H 1.09001 * 110.74691 * 203.73447 * 23 22 21 48 48 H 1.09005 * 110.92280 * 80.43999 * 23 22 21 49 49 H 1.09003 * 110.49208 * 335.77788 * 24 19 18 50 50 H 1.08998 * 110.48781 * 98.29484 * 24 19 18 51 51 H 1.08003 * 119.96118 * 179.70247 * 25 15 14 52 52 H 1.07997 * 120.03805 * 180.26938 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7039 -1.4208 5 1 2.0974 1.0964 -2.2417 6 6 3.1269 2.8776 -1.6726 7 7 3.5543 3.6176 -0.6729 8 14 3.4376 3.4173 -3.4337 9 1 2.8596 2.4174 -4.3671 10 1 2.8007 4.7383 -3.6663 11 1 4.9001 3.5248 -3.6677 12 6 2.1633 -1.2096 -0.0005 13 6 1.4704 -2.4135 -0.0005 14 6 2.1640 -3.6077 -0.0016 15 6 3.5468 -3.6060 -0.0021 16 6 4.3003 -4.9111 -0.0039 17 7 4.5446 -5.3337 -1.3894 18 6 5.2783 -6.6056 -1.4302 19 6 5.5140 -7.0120 -2.8864 20 6 6.3011 -5.9208 -3.6148 21 6 6.2828 -8.3436 -2.9442 22 6 5.3736 -9.3468 -3.6836 23 6 4.4351 -8.4524 -4.5332 24 6 4.1639 -7.2509 -3.5934 25 6 4.2398 -2.4093 0.0041 26 6 3.5524 -1.2114 -0.0006 27 1 -0.3633 -0.0001 1.0276 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5139 30 1 1.6084 2.0283 0.5140 31 1 3.1500 1.1383 0.5139 32 1 4.0311 4.4434 -0.8501 33 1 0.3903 -2.4156 0.0005 34 1 1.6258 -4.5441 -0.0012 35 1 3.7114 -5.6713 0.5094 36 1 5.2530 -4.7813 0.5098 37 1 3.6800 -5.3986 -1.9054 38 1 4.6958 -7.3774 -0.9270 39 1 6.2377 -6.4881 -0.9265 40 1 6.4418 -6.2082 -4.6567 41 1 5.7492 -4.9820 -3.5683 42 1 7.2733 -5.7946 -3.1382 43 1 7.2164 -8.2122 -3.4913 44 1 6.4888 -8.6999 -1.9350 45 1 5.9668 -9.9972 -4.3264 46 1 4.7971 -9.9363 -2.9707 47 1 3.5087 -8.9771 -4.7667 48 1 4.9319 -8.1238 -5.4462 49 1 3.3916 -7.5022 -2.8664 50 1 3.8735 -6.3716 -4.1685 51 1 5.3198 -2.4114 0.0085 52 1 4.0943 -0.2772 -0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066594381.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:24 Heat of formation + Delta-G solvation = -4.503777 kcal Electronic energy + Delta-G solvation = -26185.672312 eV Core-core repulsion = 22762.109051 eV Total energy + Delta-G solvation = -3423.563262 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.51798 -40.01622 -37.69797 -35.96509 -34.71497 -32.53978 -31.87611 -30.71968 -29.62970 -29.57156 -27.67392 -26.59492 -25.58426 -24.29397 -23.38190 -22.98708 -21.47399 -20.99401 -19.47428 -18.64140 -18.12391 -17.05290 -16.89520 -16.35842 -16.19723 -15.84046 -15.72223 -15.37968 -15.20840 -14.89225 -14.58225 -14.50671 -14.29137 -14.06096 -13.91715 -13.76192 -13.25195 -13.20612 -13.09807 -13.05063 -12.93240 -12.67027 -12.55364 -12.41294 -12.27067 -12.03442 -11.90690 -11.81656 -11.73306 -11.51281 -11.40822 -11.30096 -11.27017 -11.21501 -10.64905 -10.40121 -9.65554 -9.18916 -8.36419 -7.79537 -6.37657 0.72363 0.85318 1.35536 1.37444 1.49695 2.34225 2.64021 3.03716 3.05941 3.50895 3.71091 3.78702 3.95212 4.07892 4.14405 4.23905 4.39911 4.41159 4.45227 4.51289 4.54137 4.58458 4.66548 4.68778 4.72867 4.77562 4.83429 4.86759 4.87622 4.90786 4.92788 5.02606 5.03838 5.06015 5.13540 5.14273 5.21171 5.24727 5.28942 5.33937 5.44865 5.49724 5.52716 5.60031 5.62267 5.67494 5.70533 5.95234 6.07107 6.18287 6.26947 6.50571 6.57405 6.83015 6.94587 7.34243 8.83092 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014232 B = 0.002675 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.921203 B =10463.836849 C =11460.832151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.633 5.633 3 C 0.266 3.734 4 C -0.539 4.539 5 H 0.048 0.952 6 C 0.012 3.988 7 N -0.927 5.927 8 Si 0.962 3.038 9 H -0.271 1.271 10 H -0.273 1.273 11 H -0.277 1.277 12 C 0.212 3.788 13 C -0.216 4.216 14 C -0.061 4.061 15 C -0.157 4.157 16 C 0.121 3.879 17 N -0.691 5.691 18 C 0.074 3.926 19 C -0.060 4.060 20 C -0.127 4.127 21 C -0.115 4.115 22 C -0.121 4.121 23 C -0.124 4.124 24 C -0.117 4.117 25 C -0.056 4.056 26 C -0.217 4.217 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.009 0.991 31 H 0.010 0.990 32 H 0.267 0.733 33 H 0.133 0.867 34 H 0.142 0.858 35 H 0.045 0.955 36 H 0.072 0.928 37 H 0.341 0.659 38 H 0.035 0.965 39 H 0.066 0.934 40 H 0.050 0.950 41 H 0.050 0.950 42 H 0.047 0.953 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.070 0.930 46 H 0.067 0.933 47 H 0.069 0.931 48 H 0.063 0.937 49 H 0.064 0.936 50 H 0.059 0.941 51 H 0.119 0.881 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.987 -26.023 -2.758 26.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.341 5.341 3 C 0.145 3.855 4 C -0.578 4.578 5 H 0.066 0.934 6 C -0.188 4.188 7 N -0.567 5.567 8 Si 0.786 3.214 9 H -0.195 1.195 10 H -0.199 1.199 11 H -0.203 1.203 12 C 0.107 3.893 13 C -0.239 4.239 14 C -0.080 4.080 15 C -0.160 4.160 16 C -0.007 4.007 17 N -0.323 5.323 18 C -0.055 4.055 19 C -0.060 4.060 20 C -0.184 4.184 21 C -0.153 4.153 22 C -0.159 4.159 23 C -0.161 4.161 24 C -0.155 4.155 25 C -0.075 4.075 26 C -0.240 4.240 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.027 0.973 31 H 0.028 0.972 32 H 0.076 0.924 33 H 0.151 0.849 34 H 0.160 0.840 35 H 0.064 0.936 36 H 0.091 0.909 37 H 0.160 0.840 38 H 0.053 0.947 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.088 0.912 46 H 0.086 0.914 47 H 0.088 0.912 48 H 0.082 0.918 49 H 0.082 0.918 50 H 0.078 0.922 51 H 0.137 0.863 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.525 -25.272 -2.762 25.468 hybrid contribution -0.315 0.720 -0.437 0.900 sum 1.210 -24.552 -3.199 24.789 Atomic orbital electron populations 1.21600 0.79400 1.02525 1.00948 1.46962 1.05630 1.03716 1.77745 1.18770 0.91047 0.80300 0.95424 1.21790 1.36250 1.06435 0.93298 0.93374 1.25788 0.95106 0.96354 1.01510 1.70044 1.39063 1.14832 1.32739 0.85450 0.78044 0.78195 0.79667 1.19516 1.19861 1.20308 1.18228 0.91593 0.86561 0.92930 1.20776 1.00019 0.90675 1.12431 1.20909 0.93380 0.97219 0.96539 1.19526 0.93546 0.94397 1.08544 1.20593 0.98553 0.91989 0.89586 1.60488 1.27156 1.31434 1.13212 1.22075 0.98208 0.89266 0.95902 1.21180 0.95539 0.95155 0.94131 1.21736 0.99341 0.98284 0.99033 1.22244 0.98441 0.93696 1.00914 1.22359 0.97566 0.97325 0.98628 1.22507 0.99622 0.96034 0.97970 1.22468 0.96275 0.98351 0.98360 1.20775 0.99259 0.91230 0.96256 1.20778 0.93255 0.98488 1.11451 0.92923 0.92559 0.90314 0.97261 0.97201 0.92393 0.84925 0.84041 0.93643 0.90917 0.84030 0.94719 0.91511 0.93143 0.93112 0.93386 0.91592 0.91398 0.91165 0.91428 0.91238 0.91798 0.91773 0.92246 0.86324 0.88881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.45 10.19 127.77 1.30 4.75 16 2 N -0.63 -28.18 2.99 -726.55 -2.17 -30.35 16 3 C 0.27 14.25 4.91 85.63 0.42 14.67 16 4 C -0.54 -30.82 9.39 25.60 0.24 -30.58 16 5 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 6 C 0.01 0.66 5.46 84.66 0.46 1.12 16 7 N -0.93 -55.13 13.29 21.45 0.28 -54.85 16 8 Si 0.96 44.83 29.54 68.60 2.03 46.86 16 9 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 12 C 0.21 8.78 6.55 38.21 0.25 9.03 16 13 C -0.22 -7.14 9.21 22.40 0.21 -6.93 16 14 C -0.06 -1.71 9.69 22.25 0.22 -1.50 16 15 C -0.16 -4.55 5.40 -19.84 -0.11 -4.66 16 16 C 0.12 2.69 5.81 85.56 0.50 3.19 16 17 N -0.69 -14.74 5.68 -517.93 -2.94 -17.68 16 18 C 0.07 1.29 4.29 86.31 0.37 1.66 16 19 C -0.06 -0.96 0.74 -51.46 -0.04 -1.00 16 20 C -0.13 -2.43 7.99 71.98 0.58 -1.86 16 21 C -0.11 -1.54 6.11 31.32 0.19 -1.35 16 22 C -0.12 -1.44 6.84 31.71 0.22 -1.22 16 23 C -0.12 -1.64 6.91 31.94 0.22 -1.42 16 24 C -0.12 -1.82 4.91 31.69 0.16 -1.67 16 25 C -0.06 -1.97 9.69 22.25 0.22 -1.76 16 26 C -0.22 -9.32 9.21 22.40 0.21 -9.12 16 27 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.06 2.06 8.07 -2.39 -0.02 2.04 16 29 H 0.08 2.34 6.20 -2.39 -0.01 2.32 16 30 H 0.01 0.53 8.07 -2.38 -0.02 0.51 16 31 H 0.01 0.58 6.20 -2.38 -0.01 0.56 16 32 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 33 H 0.13 3.77 6.14 -2.91 -0.02 3.75 16 34 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 35 H 0.05 0.86 8.08 -2.38 -0.02 0.84 16 36 H 0.07 1.62 8.08 -2.38 -0.02 1.60 16 37 H 0.34 7.22 7.71 -89.69 -0.69 6.53 16 38 H 0.03 0.55 8.12 -2.39 -0.02 0.53 16 39 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.05 1.19 7.56 -2.39 -0.02 1.17 16 42 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.07 0.89 7.67 -2.39 -0.02 0.87 16 44 H 0.07 0.85 7.67 -2.39 -0.02 0.83 16 45 H 0.07 0.73 8.14 -2.39 -0.02 0.72 16 46 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.06 0.87 8.14 -2.38 -0.02 0.86 16 49 H 0.06 0.96 7.79 -2.39 -0.02 0.94 16 50 H 0.06 1.06 7.84 -2.39 -0.02 1.04 16 51 H 0.12 3.88 8.06 -2.91 -0.02 3.86 16 52 H 0.09 4.63 6.14 -2.91 -0.02 4.61 16 Total: -1.00 -63.33 404.82 2.98 -60.36 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: 0.18 Total: 24.31 kcal Atomic # 6 Polarization: -34.24 SS G_CDS: 5.60 Total: -28.64 kcal Atomic # 7 Polarization: -98.05 SS G_CDS: -4.83 Total: -102.88 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -63.33 2.98 -60.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066594381.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.851 kcal (2) G-P(sol) polarization free energy of solvation -63.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds