Wall clock time and date at job start Tue Mar 31 2020 11:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47256 * 2 1 4 4 C 1.53000 * 109.46933 * 174.11632 * 3 2 1 5 5 C 1.53004 * 109.46985 * 186.50124 * 4 3 2 6 6 C 1.52994 * 109.47429 * 294.11689 * 3 2 1 7 7 N 1.46902 * 109.47251 * 171.80406 * 6 3 2 8 8 C 1.46898 * 110.99851 * 278.63516 * 7 6 3 9 9 C 1.50701 * 109.47089 * 77.94980 * 8 7 6 10 10 H 1.07999 * 120.00173 * 0.31798 * 9 8 7 11 11 C 1.37882 * 120.00109 * 180.32376 * 9 8 7 12 12 N 1.31513 * 119.99650 * 179.97438 * 11 9 8 13 13 Si 1.86794 * 120.00124 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.47322 * 89.99614 * 13 11 9 15 15 H 1.48498 * 109.47302 * 210.00331 * 13 11 9 16 16 H 1.48504 * 109.46988 * 330.00248 * 13 11 9 17 17 C 1.46901 * 111.00010 * 154.68352 * 7 6 3 18 18 C 1.50690 * 109.47017 * 287.87063 * 17 7 6 19 19 C 1.35005 * 125.68936 * 94.78305 * 18 17 7 20 20 N 1.36849 * 107.09358 * 179.97438 * 19 18 17 21 21 C 1.36458 * 132.72704 * 180.02562 * 20 19 18 22 22 C 1.35576 * 119.07226 * 179.97438 * 21 20 19 23 23 C 1.40202 * 119.32598 * 0.02562 * 22 21 20 24 24 N 1.31227 * 120.37835 * 359.97438 * 23 22 21 25 25 C 1.34077 * 120.92420 * 0.02562 * 24 23 22 26 26 N 1.32518 * 131.95266 * 180.31443 * 25 24 23 27 27 H 1.09004 * 109.46724 * 65.52374 * 1 2 3 28 28 H 1.08994 * 109.47064 * 185.52293 * 1 2 3 29 29 H 1.09001 * 109.47112 * 305.52401 * 1 2 3 30 30 H 1.09004 * 109.47226 * 240.00005 * 2 1 3 31 31 H 1.08996 * 109.47039 * 120.00615 * 2 1 3 32 32 H 1.08999 * 109.46606 * 54.12040 * 3 2 1 33 33 H 1.08998 * 109.47384 * 306.49757 * 4 3 2 34 34 H 1.08998 * 109.47486 * 66.50410 * 4 3 2 35 35 H 1.09007 * 109.46892 * 64.72759 * 5 4 3 36 36 H 1.08997 * 109.47274 * 184.72237 * 5 4 3 37 37 H 1.09001 * 109.46912 * 304.72832 * 5 4 3 38 38 H 1.09007 * 109.46903 * 51.80446 * 6 3 2 39 39 H 1.09002 * 109.47129 * 291.80714 * 6 3 2 40 40 H 1.08999 * 109.47313 * 197.94990 * 8 7 6 41 41 H 1.09002 * 109.47364 * 317.94878 * 8 7 6 42 42 H 0.97001 * 119.99715 * 180.02562 * 12 11 9 43 43 H 1.09004 * 109.46816 * 47.86665 * 17 7 6 44 44 H 1.08999 * 109.47134 * 167.86880 * 17 7 6 45 45 H 1.07998 * 126.45533 * 359.97438 * 19 18 17 46 46 H 1.07995 * 120.46723 * 359.95284 * 21 20 19 47 47 H 1.08003 * 120.34008 * 179.97438 * 22 21 20 48 48 H 1.08007 * 119.81297 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5628 1.4450 0.1479 5 6 4.0571 2.8838 0.3107 6 6 1.6544 2.1199 -1.3165 7 7 1.9679 3.5530 -1.2401 8 6 0.9105 4.2862 -0.5315 9 6 1.0609 4.0747 0.9531 10 1 1.8650 3.4617 1.3325 11 6 0.1719 4.6639 1.8269 12 7 0.3030 4.4790 3.1224 13 14 -1.2185 5.7248 1.1708 14 1 -2.4116 4.8771 0.9191 15 1 -1.5563 6.7711 2.1690 16 1 -0.7931 6.3696 -0.0975 17 6 2.1918 4.1150 -2.5788 18 6 3.5106 3.6224 -3.1162 19 6 3.6830 2.5513 -3.9197 20 7 5.0238 2.4515 -4.1748 21 6 5.7628 1.5747 -4.9145 22 6 7.1072 1.7373 -4.9794 23 6 7.7047 2.7995 -4.2862 24 7 6.9708 3.6286 -3.5820 25 6 5.6404 3.4796 -3.5091 26 7 4.7041 4.1759 -2.8808 27 1 -0.3633 0.4258 -0.9354 28 1 -0.3633 -1.0228 0.0989 29 1 -0.3633 0.5971 0.8364 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.5932 1.9858 0.8327 33 1 3.8436 0.8629 1.0256 34 1 4.0149 1.0039 -0.7405 35 1 3.6720 3.2970 1.2430 36 1 5.1468 2.8934 0.3318 37 1 3.7045 3.4860 -0.5267 38 1 0.5864 1.9905 -1.4925 39 1 2.2148 1.6684 -2.1352 40 1 0.9917 5.3494 -0.7571 41 1 -0.0642 3.9198 -0.8537 42 1 -0.3227 4.8932 3.7371 43 1 1.3879 3.8001 -3.2441 44 1 2.2079 5.2032 -2.5179 45 1 2.9087 1.8966 -4.2913 46 1 5.2836 0.7623 -5.4405 47 1 7.7120 1.0550 -5.5584 48 1 8.7750 2.9366 -4.3328 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173554363.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:31 Heat of formation + Delta-G solvation = 119.319161 kcal Electronic energy + Delta-G solvation = -27857.638875 eV Core-core repulsion = 24335.904635 eV Total energy + Delta-G solvation = -3521.734240 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.97599 -38.74685 -37.73438 -34.87782 -34.44380 -32.53111 -31.25114 -31.15137 -29.68802 -27.92815 -27.46355 -25.42673 -24.26140 -23.32438 -23.10018 -21.16605 -20.85073 -20.08633 -19.34382 -18.20399 -17.62643 -16.59337 -16.33946 -16.21220 -15.36906 -14.86426 -14.50347 -14.30589 -14.20471 -13.84460 -13.36476 -13.31558 -13.13193 -12.92527 -12.49314 -12.33140 -12.29198 -11.97755 -11.77311 -11.66222 -11.44375 -11.31759 -10.92280 -10.67408 -10.67015 -10.39643 -10.36359 -10.06554 -9.95740 -9.85662 -9.77166 -9.61465 -9.48189 -9.01030 -8.65439 -8.44877 -8.10939 -7.09618 -5.96271 -3.92442 0.43852 0.99015 2.35179 2.75144 3.31924 3.40841 3.42218 3.53447 3.63056 4.12200 4.30401 4.48267 4.59775 4.83090 4.88095 5.12858 5.23692 5.34011 5.39379 5.47721 5.52671 5.53551 5.72806 5.74891 5.87449 6.02811 6.05969 6.11932 6.18852 6.22273 6.29775 6.42098 6.48459 6.54314 6.59352 6.61837 6.74055 6.77541 6.84391 6.91040 6.98972 7.11124 7.32989 7.48229 7.54564 7.75004 7.91647 8.00211 8.05146 8.10348 8.72895 9.18148 9.64848 11.14878 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.016130 B = 0.004208 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.428720 B = 6652.560769 C = 7286.033431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 C -0.106 4.106 4 C -0.092 4.092 5 C -0.169 4.169 6 C 0.073 3.927 7 N -0.508 5.508 8 C 0.160 3.840 9 C -0.508 4.508 10 H 0.105 0.895 11 C 0.070 3.930 12 N -0.899 5.899 13 Si 0.867 3.133 14 H -0.280 1.280 15 H -0.288 1.288 16 H -0.268 1.268 17 C 0.120 3.880 18 C 0.110 3.890 19 C -0.097 4.097 20 N -0.398 5.398 21 C 0.111 3.889 22 C -0.214 4.214 23 C 0.159 3.841 24 N -0.431 5.431 25 C 0.373 3.627 26 N -0.442 5.442 27 H 0.049 0.951 28 H 0.040 0.960 29 H 0.063 0.937 30 H 0.043 0.957 31 H 0.055 0.945 32 H 0.127 0.873 33 H 0.036 0.964 34 H 0.027 0.973 35 H 0.057 0.943 36 H 0.010 0.990 37 H 0.122 0.878 38 H 0.033 0.967 39 H 0.048 0.952 40 H 0.027 0.973 41 H -0.011 1.011 42 H 0.262 0.738 43 H 0.046 0.954 44 H 0.091 0.909 45 H 0.182 0.818 46 H 0.170 0.830 47 H 0.160 0.840 48 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.980 -9.868 -18.512 22.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.124 4.124 4 C -0.130 4.130 5 C -0.226 4.226 6 C -0.055 4.055 7 N -0.231 5.231 8 C 0.034 3.966 9 C -0.546 4.546 10 H 0.123 0.877 11 C -0.131 4.131 12 N -0.538 5.538 13 Si 0.695 3.305 14 H -0.206 1.206 15 H -0.214 1.214 16 H -0.193 1.193 17 C -0.009 4.009 18 C -0.025 4.025 19 C -0.228 4.228 20 N -0.076 5.076 21 C -0.022 4.022 22 C -0.238 4.238 23 C -0.029 4.029 24 N -0.143 5.143 25 C 0.025 3.975 26 N -0.164 5.164 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.144 0.856 33 H 0.055 0.945 34 H 0.046 0.954 35 H 0.076 0.924 36 H 0.029 0.971 37 H 0.140 0.860 38 H 0.051 0.949 39 H 0.067 0.933 40 H 0.045 0.955 41 H 0.006 0.994 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.110 0.890 45 H 0.199 0.801 46 H 0.187 0.813 47 H 0.178 0.822 48 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 9.559 -8.259 -17.029 21.203 hybrid contribution -1.906 -1.160 -1.649 2.775 sum 7.653 -9.419 -18.678 22.274 Atomic orbital electron populations 1.21790 0.96302 1.00270 1.02358 1.21516 0.95635 0.97698 1.00307 1.21698 0.95794 0.94095 1.00779 1.21275 0.95344 0.98165 0.98169 1.22375 0.96594 0.96990 1.06635 1.22126 0.97662 0.88426 0.97295 1.62053 1.45856 1.02567 1.12632 1.20353 0.87019 0.93420 0.95785 1.21385 1.14387 1.30908 0.87912 0.87737 1.24887 0.97345 0.96153 0.94763 1.69882 1.37495 1.44916 1.01545 0.86991 0.83313 0.81061 0.79157 1.20598 1.21411 1.19252 1.20516 0.88389 1.00628 0.91349 1.20985 0.94295 0.92432 0.94794 1.22412 0.82933 1.06232 1.11217 1.43970 1.08932 1.22033 1.32707 1.22118 0.92305 0.93963 0.93774 1.21722 0.93647 1.02730 1.05685 1.23225 1.00549 0.89017 0.90064 1.67855 1.00745 1.27282 1.18375 1.22030 0.90688 0.87715 0.97062 1.70695 0.97298 1.26981 1.21429 0.93158 0.94089 0.91772 0.93814 0.92669 0.85583 0.94493 0.95388 0.92390 0.97119 0.86049 0.94909 0.93343 0.95460 0.99370 0.92821 0.93618 0.89036 0.80103 0.81294 0.82208 0.80454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.56 37.16 0.36 -2.00 16 2 C -0.11 -1.84 5.39 -26.73 -0.14 -1.98 16 3 C -0.11 -2.01 1.85 -90.62 -0.17 -2.18 16 4 C -0.09 -1.78 5.39 -26.73 -0.14 -1.92 16 5 C -0.17 -3.69 8.82 37.16 0.33 -3.37 16 6 C 0.07 1.30 4.12 -3.83 -0.02 1.29 16 7 N -0.51 -10.04 1.15 -237.52 -0.27 -10.31 16 8 C 0.16 3.67 3.85 -4.98 -0.02 3.65 16 9 C -0.51 -13.58 8.15 -34.44 -0.28 -13.86 16 10 H 0.11 2.97 3.45 -52.49 -0.18 2.79 16 11 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 12 N -0.90 -26.88 13.96 55.43 0.77 -26.11 16 13 Si 0.87 21.09 27.46 -169.99 -4.67 16.43 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 15 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 16 H -0.27 -6.27 6.55 56.52 0.37 -5.90 16 17 C 0.12 2.04 5.44 -4.98 -0.03 2.01 16 18 C 0.11 1.81 5.31 -82.96 -0.44 1.37 16 19 C -0.10 -1.29 10.33 -16.46 -0.17 -1.46 16 20 N -0.40 -5.16 2.95 -64.40 -0.19 -5.35 16 21 C 0.11 0.93 11.07 -16.44 -0.18 0.74 16 22 C -0.21 -1.43 10.06 -39.80 -0.40 -1.83 16 23 C 0.16 1.45 11.27 -17.07 -0.19 1.26 16 24 N -0.43 -6.35 10.48 -13.70 -0.14 -6.49 16 25 C 0.37 6.15 8.92 -322.54 -2.88 3.27 16 26 N -0.44 -8.36 11.07 -10.67 -0.12 -8.48 16 27 H 0.05 0.76 6.69 -51.93 -0.35 0.41 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.13 2.94 4.46 -51.93 -0.23 2.71 16 33 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.03 0.51 8.11 -51.93 -0.42 0.09 16 35 H 0.06 1.42 6.43 -51.93 -0.33 1.08 16 36 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 37 H 0.12 2.71 3.78 -51.93 -0.20 2.51 16 38 H 0.03 0.59 5.82 -51.93 -0.30 0.29 16 39 H 0.05 0.78 5.91 -51.93 -0.31 0.47 16 40 H 0.03 0.64 6.68 -51.93 -0.35 0.30 16 41 H -0.01 -0.26 7.03 -51.93 -0.37 -0.62 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 43 H 0.05 0.66 8.05 -51.93 -0.42 0.24 16 44 H 0.09 1.61 7.66 -51.93 -0.40 1.21 16 45 H 0.18 1.81 7.96 -52.49 -0.42 1.39 16 46 H 0.17 0.74 8.06 -52.49 -0.42 0.32 16 47 H 0.16 0.40 8.06 -52.48 -0.42 -0.02 16 48 H 0.18 0.89 8.06 -52.48 -0.42 0.46 16 LS Contribution 366.17 15.07 5.52 5.52 Total: -1.00 -33.72 366.17 -10.81 -44.54 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -7.24 Total: 3.41 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -4.48 Total: -13.15 kcal Atomic # 7 Polarization: -56.79 SS G_CDS: 0.05 Total: -56.75 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.43 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.72 -10.81 -44.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173554363.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.857 kcal (2) G-P(sol) polarization free energy of solvation -33.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds