Wall clock time and date at job start Tue Mar 31 2020 11:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47256 * 2 1 4 4 C 1.53000 * 109.46933 * 174.11632 * 3 2 1 5 5 C 1.53004 * 109.46985 * 186.50124 * 4 3 2 6 6 C 1.52994 * 109.47429 * 294.11689 * 3 2 1 7 7 N 1.46902 * 109.47251 * 171.80406 * 6 3 2 8 8 C 1.46898 * 110.99851 * 278.63516 * 7 6 3 9 9 C 1.50701 * 109.47089 * 77.94980 * 8 7 6 10 10 H 1.07999 * 120.00173 * 0.31798 * 9 8 7 11 11 C 1.37882 * 120.00109 * 180.32376 * 9 8 7 12 12 N 1.31513 * 119.99650 * 179.97438 * 11 9 8 13 13 Si 1.86794 * 120.00124 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.47322 * 89.99614 * 13 11 9 15 15 H 1.48498 * 109.47302 * 210.00331 * 13 11 9 16 16 H 1.48504 * 109.46988 * 330.00248 * 13 11 9 17 17 C 1.46901 * 111.00010 * 154.68352 * 7 6 3 18 18 C 1.50690 * 109.47017 * 287.87063 * 17 7 6 19 19 C 1.35005 * 125.68936 * 94.78305 * 18 17 7 20 20 N 1.36849 * 107.09358 * 179.97438 * 19 18 17 21 21 C 1.36458 * 132.72704 * 180.02562 * 20 19 18 22 22 C 1.35576 * 119.07226 * 179.97438 * 21 20 19 23 23 C 1.40202 * 119.32598 * 0.02562 * 22 21 20 24 24 N 1.31227 * 120.37835 * 359.97438 * 23 22 21 25 25 C 1.34077 * 120.92420 * 0.02562 * 24 23 22 26 26 N 1.32518 * 131.95266 * 180.31443 * 25 24 23 27 27 H 1.09004 * 109.46724 * 65.52374 * 1 2 3 28 28 H 1.08994 * 109.47064 * 185.52293 * 1 2 3 29 29 H 1.09001 * 109.47112 * 305.52401 * 1 2 3 30 30 H 1.09004 * 109.47226 * 240.00005 * 2 1 3 31 31 H 1.08996 * 109.47039 * 120.00615 * 2 1 3 32 32 H 1.08999 * 109.46606 * 54.12040 * 3 2 1 33 33 H 1.08998 * 109.47384 * 306.49757 * 4 3 2 34 34 H 1.08998 * 109.47486 * 66.50410 * 4 3 2 35 35 H 1.09007 * 109.46892 * 64.72759 * 5 4 3 36 36 H 1.08997 * 109.47274 * 184.72237 * 5 4 3 37 37 H 1.09001 * 109.46912 * 304.72832 * 5 4 3 38 38 H 1.09007 * 109.46903 * 51.80446 * 6 3 2 39 39 H 1.09002 * 109.47129 * 291.80714 * 6 3 2 40 40 H 1.08999 * 109.47313 * 197.94990 * 8 7 6 41 41 H 1.09002 * 109.47364 * 317.94878 * 8 7 6 42 42 H 0.97001 * 119.99715 * 180.02562 * 12 11 9 43 43 H 1.09004 * 109.46816 * 47.86665 * 17 7 6 44 44 H 1.08999 * 109.47134 * 167.86880 * 17 7 6 45 45 H 1.07998 * 126.45533 * 359.97438 * 19 18 17 46 46 H 1.07995 * 120.46723 * 359.95284 * 21 20 19 47 47 H 1.08003 * 120.34008 * 179.97438 * 22 21 20 48 48 H 1.08007 * 119.81297 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5628 1.4450 0.1479 5 6 4.0571 2.8838 0.3107 6 6 1.6544 2.1199 -1.3165 7 7 1.9679 3.5530 -1.2401 8 6 0.9105 4.2862 -0.5315 9 6 1.0609 4.0747 0.9531 10 1 1.8650 3.4617 1.3325 11 6 0.1719 4.6639 1.8269 12 7 0.3030 4.4790 3.1224 13 14 -1.2185 5.7248 1.1708 14 1 -2.4116 4.8771 0.9191 15 1 -1.5563 6.7711 2.1690 16 1 -0.7931 6.3696 -0.0975 17 6 2.1918 4.1150 -2.5788 18 6 3.5106 3.6224 -3.1162 19 6 3.6830 2.5513 -3.9197 20 7 5.0238 2.4515 -4.1748 21 6 5.7628 1.5747 -4.9145 22 6 7.1072 1.7373 -4.9794 23 6 7.7047 2.7995 -4.2862 24 7 6.9708 3.6286 -3.5820 25 6 5.6404 3.4796 -3.5091 26 7 4.7041 4.1759 -2.8808 27 1 -0.3633 0.4258 -0.9354 28 1 -0.3633 -1.0228 0.0989 29 1 -0.3633 0.5971 0.8364 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.5932 1.9858 0.8327 33 1 3.8436 0.8629 1.0256 34 1 4.0149 1.0039 -0.7405 35 1 3.6720 3.2970 1.2430 36 1 5.1468 2.8934 0.3318 37 1 3.7045 3.4860 -0.5267 38 1 0.5864 1.9905 -1.4925 39 1 2.2148 1.6684 -2.1352 40 1 0.9917 5.3494 -0.7571 41 1 -0.0642 3.9198 -0.8537 42 1 -0.3227 4.8932 3.7371 43 1 1.3879 3.8001 -3.2441 44 1 2.2079 5.2032 -2.5179 45 1 2.9087 1.8966 -4.2913 46 1 5.2836 0.7623 -5.4405 47 1 7.7120 1.0550 -5.5584 48 1 8.7750 2.9366 -4.3328 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173554363.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:30 Heat of formation + Delta-G solvation = 101.167254 kcal Electronic energy + Delta-G solvation = -27858.426001 eV Core-core repulsion = 24335.904635 eV Total energy + Delta-G solvation = -3522.521366 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.89057 -39.97133 -38.88823 -36.25200 -35.42598 -34.54389 -32.75062 -32.16286 -30.87269 -29.55528 -28.76861 -26.79642 -25.48040 -24.43939 -24.18815 -22.66516 -22.41489 -21.33296 -20.90334 -19.10720 -18.57565 -18.38187 -17.37991 -16.99281 -16.80605 -16.49828 -15.76896 -15.63356 -15.17500 -15.15076 -14.90835 -14.61469 -14.32271 -14.27108 -13.87780 -13.76596 -13.48205 -13.33504 -13.26218 -13.06251 -12.95328 -12.64722 -12.52724 -12.46854 -12.24893 -12.00121 -11.80649 -11.72895 -11.46817 -11.31934 -11.21745 -11.05153 -10.68526 -10.63179 -10.44617 -9.90834 -9.08364 -8.62793 -8.11670 -6.10917 -0.24774 0.18757 1.36586 1.40360 1.48698 1.54530 1.79016 2.43386 2.66958 2.75272 3.18796 3.34411 3.52087 3.68074 3.82603 4.04403 4.11172 4.18336 4.26822 4.33726 4.40410 4.49087 4.55596 4.63895 4.70656 4.72287 4.76422 4.81417 4.83123 4.87745 4.95281 4.99015 5.05749 5.10917 5.16354 5.29645 5.31317 5.35674 5.42376 5.48577 5.55333 5.59901 5.68862 5.83218 5.92380 6.17443 6.23732 6.53058 6.67893 6.75896 7.02896 7.12573 7.49681 9.02439 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.016130 B = 0.004208 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.428720 B = 6652.560769 C = 7286.033431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.107 4.107 3 C -0.104 4.104 4 C -0.081 4.081 5 C -0.159 4.159 6 C 0.078 3.922 7 N -0.524 5.524 8 C 0.169 3.831 9 C -0.500 4.500 10 H 0.078 0.922 11 C 0.009 3.991 12 N -0.951 5.951 13 Si 0.929 3.071 14 H -0.269 1.269 15 H -0.293 1.293 16 H -0.252 1.252 17 C 0.125 3.875 18 C 0.074 3.926 19 C -0.080 4.080 20 N -0.401 5.401 21 C 0.103 3.897 22 C -0.198 4.198 23 C 0.171 3.829 24 N -0.494 5.494 25 C 0.353 3.647 26 N -0.509 5.509 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.029 0.971 30 H 0.074 0.926 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.034 0.966 34 H 0.047 0.953 35 H 0.016 0.984 36 H 0.003 0.997 37 H 0.123 0.877 38 H 0.037 0.963 39 H 0.077 0.923 40 H 0.019 0.981 41 H -0.003 1.003 42 H 0.260 0.740 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.219 0.781 46 H 0.217 0.783 47 H 0.214 0.786 48 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.601 -12.944 -23.037 28.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.145 4.145 3 C -0.122 4.122 4 C -0.119 4.119 5 C -0.216 4.216 6 C -0.049 4.049 7 N -0.248 5.248 8 C 0.043 3.957 9 C -0.538 4.538 10 H 0.096 0.904 11 C -0.187 4.187 12 N -0.593 5.593 13 Si 0.755 3.245 14 H -0.195 1.195 15 H -0.219 1.219 16 H -0.176 1.176 17 C -0.004 4.004 18 C -0.059 4.059 19 C -0.212 4.212 20 N -0.079 5.079 21 C -0.028 4.028 22 C -0.221 4.221 23 C -0.015 4.015 24 N -0.208 5.208 25 C 0.004 3.996 26 N -0.232 5.232 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.048 0.952 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.035 0.965 36 H 0.022 0.978 37 H 0.141 0.859 38 H 0.055 0.945 39 H 0.095 0.905 40 H 0.037 0.963 41 H 0.014 0.986 42 H 0.069 0.931 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.236 0.764 46 H 0.233 0.767 47 H 0.230 0.770 48 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 10.193 -11.363 -21.605 26.453 hybrid contribution -1.771 -0.308 -0.356 1.832 sum 8.422 -11.671 -21.961 26.257 Atomic orbital electron populations 1.21741 0.95915 1.01293 1.01329 1.21456 0.95893 0.95548 1.01624 1.21543 0.95015 0.95856 0.99809 1.21168 0.95857 0.96045 0.98822 1.22275 0.95878 0.99045 1.04427 1.22113 0.98281 0.87221 0.97283 1.61813 1.44582 1.03483 1.14884 1.20089 0.88440 0.93462 0.93738 1.21724 1.12840 1.29017 0.90249 0.90434 1.25682 1.00270 0.97924 0.94855 1.70047 1.39089 1.47075 1.03074 0.85974 0.80399 0.79293 0.78840 1.19457 1.21933 1.17634 1.20451 0.90276 0.99498 0.90168 1.20826 0.93299 0.94487 0.97251 1.22762 0.83828 1.05102 1.09484 1.44059 1.08780 1.22128 1.32907 1.23126 0.93007 0.93905 0.92770 1.22350 0.93569 1.01919 1.04228 1.24150 1.02026 0.87964 0.87368 1.67896 1.00587 1.30389 1.21894 1.22027 0.91221 0.88692 0.97673 1.70493 0.98915 1.29618 1.24188 0.92259 0.91497 0.95219 0.90753 0.92964 0.90511 0.94713 0.93473 0.96500 0.97781 0.85943 0.94477 0.90462 0.96265 0.98585 0.93106 0.90597 0.91051 0.76401 0.76668 0.76952 0.76804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.34 9.56 71.98 0.69 -3.65 16 2 C -0.11 -3.27 5.39 30.59 0.16 -3.11 16 3 C -0.10 -3.95 1.85 -10.79 -0.02 -3.97 16 4 C -0.08 -3.17 5.39 30.60 0.16 -3.00 16 5 C -0.16 -7.36 8.82 71.98 0.63 -6.72 16 6 C 0.08 2.70 4.12 86.30 0.36 3.06 16 7 N -0.52 -20.91 1.15 -905.37 -1.05 -21.96 16 8 C 0.17 7.93 3.85 85.56 0.33 8.26 16 9 C -0.50 -28.10 8.15 25.60 0.21 -27.89 16 10 H 0.08 4.76 3.45 -2.91 -0.01 4.75 16 11 C 0.01 0.51 5.47 84.66 0.46 0.97 16 12 N -0.95 -60.08 13.96 21.45 0.30 -59.78 16 13 Si 0.93 44.71 27.46 68.60 1.88 46.59 16 14 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 15 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 16 H -0.25 -11.39 6.55 99.48 0.65 -10.74 16 17 C 0.12 4.19 5.44 85.55 0.47 4.66 16 18 C 0.07 2.42 5.31 41.54 0.22 2.64 16 19 C -0.08 -1.90 10.33 83.17 0.86 -1.04 16 20 N -0.40 -9.23 2.95 -357.67 -1.05 -10.28 16 21 C 0.10 1.17 11.07 83.36 0.92 2.10 16 22 C -0.20 -1.56 10.06 22.13 0.22 -1.33 16 23 C 0.17 2.54 11.27 85.26 0.96 3.50 16 24 N -0.49 -14.20 10.48 -197.26 -2.07 -16.27 16 25 C 0.35 11.48 8.92 261.39 2.33 13.81 16 26 N -0.51 -19.80 11.07 -187.66 -2.08 -21.87 16 27 H 0.06 1.64 6.69 -2.39 -0.02 1.63 16 28 H 0.07 1.63 8.14 -2.39 -0.02 1.62 16 29 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 31 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.08 3.78 4.46 -2.39 -0.01 3.77 16 33 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.05 1.65 8.11 -2.39 -0.02 1.63 16 35 H 0.02 0.87 6.43 -2.38 -0.02 0.85 16 36 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 37 H 0.12 5.74 3.78 -2.39 -0.01 5.73 16 38 H 0.04 1.25 5.82 -2.38 -0.01 1.24 16 39 H 0.08 2.22 5.91 -2.39 -0.01 2.20 16 40 H 0.02 0.93 6.68 -2.39 -0.02 0.91 16 41 H 0.00 -0.16 7.03 -2.39 -0.02 -0.17 16 42 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 43 H 0.08 2.04 8.05 -2.38 -0.02 2.02 16 44 H 0.07 2.61 7.66 -2.39 -0.02 2.60 16 45 H 0.22 3.21 7.96 -2.91 -0.02 3.19 16 46 H 0.22 0.33 8.06 -2.91 -0.02 0.31 16 47 H 0.21 -0.60 8.06 -2.91 -0.02 -0.62 16 48 H 0.22 1.26 8.06 -2.91 -0.02 1.23 16 Total: -1.00 -83.47 366.17 5.82 -77.66 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 0.91 Total: 17.65 kcal Atomic # 6 Polarization: -20.71 SS G_CDS: 8.97 Total: -11.73 kcal Atomic # 7 Polarization: -124.22 SS G_CDS: -5.94 Total: -130.16 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 1.88 Total: 46.59 kcal Total: -83.47 5.82 -77.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173554363.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.824 kcal (2) G-P(sol) polarization free energy of solvation -83.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds