Wall clock time and date at job start Tue Mar 31 2020 10:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46902 * 110.99636 * 2 1 4 4 C 1.52997 * 109.47031 * 66.05021 * 3 2 1 5 5 C 1.53008 * 109.47059 * 179.97438 * 4 3 2 6 6 O 1.42897 * 109.46842 * 179.97438 * 5 4 3 7 7 C 1.46903 * 110.99572 * 236.04836 * 2 1 3 8 8 C 1.53110 * 109.52345 * 298.95206 * 7 2 1 9 9 C 1.53032 * 109.27921 * 177.62504 * 8 7 2 10 10 N 1.46852 * 109.52437 * 300.82148 * 9 8 7 11 11 C 1.46902 * 110.99971 * 185.83517 * 10 9 8 12 12 C 1.53001 * 109.46901 * 169.99744 * 11 10 9 13 13 C 1.53000 * 109.46886 * 180.02562 * 12 11 10 14 14 S 1.81002 * 109.47004 * 180.02562 * 13 12 11 15 15 C 1.76193 * 100.00049 * 180.02562 * 14 13 12 16 16 H 1.08005 * 120.00026 * 359.97438 * 15 14 13 17 17 C 1.38806 * 120.00056 * 180.02562 * 15 14 13 18 18 N 1.31631 * 120.00121 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 119.99856 * 0.02562 * 17 15 14 20 20 H 1.48489 * 109.47437 * 89.99924 * 19 17 15 21 21 H 1.48500 * 109.46931 * 210.00082 * 19 17 15 22 22 H 1.48503 * 109.46655 * 329.99597 * 19 17 15 23 23 C 1.46848 * 111.19424 * 61.74147 * 10 9 8 24 24 C 1.53034 * 109.52086 * 298.25597 * 23 10 9 25 25 H 1.08993 * 109.47124 * 183.95187 * 1 2 3 26 26 H 1.09003 * 109.46721 * 303.95160 * 1 2 3 27 27 H 1.08998 * 109.47220 * 63.95170 * 1 2 3 28 28 H 1.09001 * 109.46346 * 186.04802 * 3 2 1 29 29 H 1.08994 * 109.47391 * 306.04219 * 3 2 1 30 30 H 1.09000 * 109.47183 * 299.99665 * 4 3 2 31 31 H 1.09002 * 109.47124 * 59.99596 * 4 3 2 32 32 H 1.09001 * 109.46988 * 300.00190 * 5 4 3 33 33 H 1.08996 * 109.46446 * 60.00049 * 5 4 3 34 34 H 0.96701 * 113.99125 * 179.97438 * 6 5 4 35 35 H 1.08996 * 109.51776 * 178.82645 * 7 2 1 36 36 H 1.09000 * 109.50668 * 57.68369 * 8 7 2 37 37 H 1.08999 * 109.50680 * 297.57082 * 8 7 2 38 38 H 1.08999 * 109.46700 * 180.80460 * 9 8 7 39 39 H 1.09001 * 109.45697 * 60.83587 * 9 8 7 40 40 H 1.09001 * 109.46712 * 50.00147 * 11 10 9 41 41 H 1.09002 * 109.47411 * 290.00258 * 11 10 9 42 42 H 1.09001 * 109.46652 * 60.00371 * 12 11 10 43 43 H 1.08992 * 109.47514 * 300.00460 * 12 11 10 44 44 H 1.09002 * 109.47398 * 300.00496 * 13 12 11 45 45 H 1.09001 * 109.47194 * 60.00677 * 13 12 11 46 46 H 0.96999 * 120.00138 * 179.97438 * 18 17 15 47 47 H 1.09004 * 109.46425 * 58.27501 * 23 10 9 48 48 H 1.09002 * 109.45789 * 178.23868 * 23 10 9 49 49 H 1.08996 * 109.50601 * 299.24170 * 24 23 10 50 50 H 1.09006 * 109.50179 * 179.12409 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6315 2.0574 1.3183 5 6 2.1803 3.4857 1.3186 6 8 1.8398 4.1265 2.5496 7 6 1.9954 -0.7660 -1.1377 8 6 1.5266 -2.2200 -1.0363 9 6 2.0283 -2.9987 -2.2544 10 7 1.5064 -2.3816 -3.4805 11 6 1.8535 -3.1827 -4.6620 12 6 1.0914 -2.6537 -5.8786 13 6 1.4525 -3.4884 -7.1090 14 16 0.5515 -2.8621 -8.5485 15 6 1.1383 -3.9730 -9.7838 16 1 1.8461 -4.7459 -9.5228 17 6 0.6916 -3.8543 -11.0927 18 7 1.1304 -4.6839 -12.0157 19 14 -0.5310 -2.5162 -11.5445 20 1 0.2034 -1.2898 -11.9464 21 1 -1.3765 -2.9793 -12.6741 22 1 -1.3919 -2.2161 -10.3723 23 6 1.9821 -0.9997 -3.6234 24 6 1.4789 -0.1614 -2.4461 25 1 -0.3633 -1.0251 0.0708 26 1 -0.3633 0.5740 0.8525 27 1 -0.3633 0.4513 -0.9233 28 1 3.0797 1.3444 -0.1083 29 1 1.5612 1.9274 -0.8309 30 1 0.5472 2.0844 1.4266 31 1 2.0659 1.5014 2.1492 32 1 3.2646 3.4583 1.2104 33 1 1.7462 4.0417 0.4877 34 1 2.1570 5.0373 2.6196 35 1 3.0848 -0.7329 -1.1262 36 1 0.4373 -2.2501 -1.0086 37 1 1.9267 -2.6689 -0.1273 38 1 1.6841 -4.0311 -2.1925 39 1 3.1180 -2.9799 -2.2738 40 1 1.5818 -4.2238 -4.4876 41 1 2.9256 -3.1129 -4.8461 42 1 1.3631 -1.6126 -6.0529 43 1 0.0194 -2.7235 -5.6945 44 1 2.5246 -3.4190 -7.2934 45 1 1.1804 -4.5294 -6.9344 46 1 0.8180 -4.6012 -12.9302 47 1 3.0720 -0.9903 -3.6364 48 1 1.6043 -0.5802 -4.5558 49 1 0.3889 -0.1590 -2.4406 50 1 1.8451 0.8606 -2.5444 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173894806.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:40 Heat of formation + Delta-G solvation = -61.234716 kcal Electronic energy + Delta-G solvation = -24195.604315 eV Core-core repulsion = 20769.191872 eV Total energy + Delta-G solvation = -3426.412443 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.193 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.05755 -37.97159 -37.05788 -34.29681 -32.45087 -32.39295 -31.09294 -30.35157 -27.31675 -26.17832 -25.60182 -24.27389 -23.56806 -22.28535 -21.13348 -20.67328 -19.52705 -17.78320 -17.47404 -16.62604 -16.23676 -15.97565 -15.54452 -15.03374 -14.93593 -14.76944 -14.58854 -14.23860 -14.09066 -13.93746 -13.66619 -13.34074 -12.90906 -12.83412 -12.56195 -12.34970 -12.25536 -11.98055 -11.79852 -11.66065 -11.51047 -11.36360 -11.19603 -11.12839 -11.07547 -11.05141 -10.90620 -10.54375 -10.40015 -10.33075 -10.10402 -9.76556 -9.00630 -8.58148 -8.55338 -8.37862 -6.93953 -6.28408 -4.00481 3.00570 3.29614 3.33840 3.45427 3.54599 3.85015 3.97590 4.31641 4.46235 4.50151 4.57127 4.72857 4.78611 4.80553 4.86630 4.92394 4.99231 5.05965 5.09387 5.10419 5.15224 5.21707 5.23330 5.26544 5.34998 5.40426 5.43175 5.50147 5.61751 5.65039 5.65902 5.73332 5.76338 5.80335 5.82209 5.84769 5.93389 6.01750 6.09912 6.24292 6.48827 6.64095 6.71535 6.74661 7.03196 7.05039 7.14220 7.95354 8.44217 9.17554 10.81082 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.024346 B = 0.001959 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.797448 B =14292.120415 C =15031.221608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.534 5.534 3 C 0.056 3.944 4 C -0.118 4.118 5 C 0.076 3.924 6 O -0.575 6.575 7 C 0.084 3.916 8 C -0.107 4.107 9 C 0.056 3.944 10 N -0.538 5.538 11 C 0.061 3.939 12 C -0.097 4.097 13 C -0.082 4.082 14 S -0.216 6.216 15 C -0.502 4.502 16 H 0.087 0.913 17 C 0.091 3.909 18 N -0.882 5.882 19 Si 0.862 3.138 20 H -0.269 1.269 21 H -0.276 1.276 22 H -0.238 1.238 23 C 0.056 3.944 24 C -0.150 4.150 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.033 0.967 28 H 0.074 0.926 29 H 0.038 0.962 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.046 0.954 33 H 0.044 0.956 34 H 0.380 0.620 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.031 0.969 40 H 0.075 0.925 41 H 0.033 0.967 42 H 0.065 0.935 43 H 0.074 0.926 44 H 0.064 0.936 45 H 0.068 0.932 46 H 0.270 0.730 47 H 0.031 0.969 48 H 0.082 0.918 49 H 0.076 0.924 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.538 13.306 27.858 30.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.256 5.256 3 C -0.072 4.072 4 C -0.156 4.156 5 C -0.002 4.002 6 O -0.381 6.381 7 C -0.024 4.024 8 C -0.145 4.145 9 C -0.072 4.072 10 N -0.262 5.262 11 C -0.068 4.068 12 C -0.135 4.135 13 C -0.231 4.231 14 S 0.012 5.988 15 C -0.650 4.650 16 H 0.105 0.895 17 C -0.117 4.117 18 N -0.519 5.519 19 Si 0.687 3.313 20 H -0.194 1.194 21 H -0.201 1.201 22 H -0.161 1.161 23 C -0.072 4.072 24 C -0.189 4.189 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.051 0.949 28 H 0.092 0.908 29 H 0.056 0.944 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.227 0.773 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.050 0.950 40 H 0.094 0.906 41 H 0.051 0.949 42 H 0.083 0.917 43 H 0.093 0.907 44 H 0.083 0.917 45 H 0.086 0.914 46 H 0.080 0.920 47 H 0.049 0.951 48 H 0.100 0.900 49 H 0.095 0.905 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.173 13.298 28.166 31.169 hybrid contribution 1.353 0.360 -1.474 2.033 sum 2.526 13.657 26.692 30.089 Atomic orbital electron populations 1.22548 0.87499 1.02728 1.00709 1.62209 1.08246 1.12893 1.42282 1.21978 1.00232 0.88809 0.96170 1.21509 1.02083 0.93554 0.98410 1.22132 0.98423 0.93780 0.85885 1.86473 1.81470 1.31403 1.38742 1.21807 0.99191 0.93744 0.87654 1.21648 1.02072 0.93578 0.97247 1.22068 0.97072 0.98491 0.89584 1.61926 1.59996 1.02054 1.02263 1.22144 0.97691 0.97479 0.89523 1.21340 1.01190 0.99312 0.91701 1.23019 1.02167 1.01650 0.96275 1.84147 1.61523 1.48542 1.04580 1.22132 1.31339 1.17749 0.93764 0.89453 1.24800 0.95806 0.95856 0.95215 1.69939 1.43115 1.36542 1.02291 0.86665 0.82292 0.82132 0.80236 1.19420 1.20106 1.16148 1.22060 0.97227 0.89011 0.98911 1.22278 1.02508 0.98715 0.95371 0.90812 0.91416 0.94854 0.90775 0.94366 0.91098 0.90410 0.93580 0.93742 0.77329 0.90383 0.90739 0.90874 0.90429 0.95029 0.90625 0.94861 0.91686 0.90699 0.91682 0.91359 0.91996 0.95055 0.89987 0.90499 0.91789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 8.62 60.07 0.52 0.62 16 2 N -0.53 -4.29 4.75 -234.74 -1.12 -5.41 16 3 C 0.06 0.39 4.41 -3.82 -0.02 0.38 16 4 C -0.12 -0.83 5.51 -26.73 -0.15 -0.98 16 5 C 0.08 0.46 7.05 37.16 0.26 0.72 16 6 O -0.58 -4.07 13.66 -35.23 -0.48 -4.55 16 7 C 0.08 0.71 2.29 -67.59 -0.15 0.55 16 8 C -0.11 -0.92 5.24 -26.66 -0.14 -1.06 16 9 C 0.06 0.54 5.46 -3.83 -0.02 0.52 16 10 N -0.54 -6.15 4.66 -234.66 -1.09 -7.24 16 11 C 0.06 0.78 4.96 -3.82 -0.02 0.76 16 12 C -0.10 -1.49 5.15 -26.73 -0.14 -1.63 16 13 C -0.08 -1.59 5.67 37.16 0.21 -1.38 16 14 S -0.22 -5.29 19.41 -107.50 -2.09 -7.38 16 15 C -0.50 -14.67 10.04 30.94 0.31 -14.36 16 16 H 0.09 2.71 8.03 -52.48 -0.42 2.29 16 17 C 0.09 2.69 5.50 -17.43 -0.10 2.59 16 18 N -0.88 -26.86 13.97 55.49 0.78 -26.08 16 19 Si 0.86 21.65 27.74 -169.99 -4.72 16.94 16 20 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.24 -5.86 6.74 56.52 0.38 -5.47 16 23 C 0.06 0.60 5.29 -3.83 -0.02 0.58 16 24 C -0.15 -1.35 4.69 -26.65 -0.13 -1.47 16 25 H 0.07 0.57 6.28 -51.93 -0.33 0.24 16 26 H 0.07 0.48 6.30 -51.93 -0.33 0.16 16 27 H 0.03 0.27 6.23 -51.93 -0.32 -0.06 16 28 H 0.07 0.49 8.00 -51.93 -0.42 0.08 16 29 H 0.04 0.27 7.01 -51.93 -0.36 -0.10 16 30 H 0.07 0.54 6.47 -51.93 -0.34 0.21 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.38 0.95 9.12 45.56 0.42 1.37 16 35 H 0.08 0.68 8.03 -51.93 -0.42 0.26 16 36 H 0.07 0.68 6.32 -51.93 -0.33 0.36 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.72 8.02 -51.93 -0.42 0.30 16 39 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.08 0.94 7.99 -51.93 -0.41 0.53 16 41 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 42 H 0.06 1.00 6.43 -51.93 -0.33 0.67 16 43 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.06 1.26 8.14 -51.91 -0.42 0.84 16 45 H 0.07 1.33 8.14 -51.92 -0.42 0.90 16 46 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 47 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.08 0.95 6.21 -51.93 -0.32 0.63 16 49 H 0.08 0.77 6.27 -51.93 -0.33 0.44 16 50 H 0.06 0.54 6.90 -51.93 -0.36 0.18 16 LS Contribution 388.33 15.07 5.85 5.85 Total: -1.00 -32.09 388.33 -10.84 -42.93 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -8.40 Total: -0.89 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: 0.42 Total: -14.17 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: -1.43 Total: -38.73 kcal Atomic # 8 Polarization: -4.07 SS G_CDS: -0.48 Total: -4.55 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.72 Total: 16.94 kcal Atomic # 16 Polarization: -5.29 SS G_CDS: -2.09 Total: -7.38 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.09 -10.84 -42.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173894806.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.305 kcal (2) G-P(sol) polarization free energy of solvation -32.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds