Wall clock time and date at job start Tue Mar 31 2020 10:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46902 * 110.99636 * 2 1 4 4 C 1.52997 * 109.47031 * 66.05021 * 3 2 1 5 5 C 1.53008 * 109.47059 * 179.97438 * 4 3 2 6 6 O 1.42897 * 109.46842 * 179.97438 * 5 4 3 7 7 C 1.46903 * 110.99572 * 236.04836 * 2 1 3 8 8 C 1.53110 * 109.52345 * 298.95206 * 7 2 1 9 9 C 1.53032 * 109.27921 * 177.62504 * 8 7 2 10 10 N 1.46852 * 109.52437 * 300.82148 * 9 8 7 11 11 C 1.46902 * 110.99971 * 185.83517 * 10 9 8 12 12 C 1.53001 * 109.46901 * 169.99744 * 11 10 9 13 13 C 1.53000 * 109.46886 * 180.02562 * 12 11 10 14 14 S 1.81002 * 109.47004 * 180.02562 * 13 12 11 15 15 C 1.76193 * 100.00049 * 180.02562 * 14 13 12 16 16 H 1.08005 * 120.00026 * 359.97438 * 15 14 13 17 17 C 1.38806 * 120.00056 * 180.02562 * 15 14 13 18 18 N 1.31631 * 120.00121 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 119.99856 * 0.02562 * 17 15 14 20 20 H 1.48489 * 109.47437 * 89.99924 * 19 17 15 21 21 H 1.48500 * 109.46931 * 210.00082 * 19 17 15 22 22 H 1.48503 * 109.46655 * 329.99597 * 19 17 15 23 23 C 1.46848 * 111.19424 * 61.74147 * 10 9 8 24 24 C 1.53034 * 109.52086 * 298.25597 * 23 10 9 25 25 H 1.08993 * 109.47124 * 183.95187 * 1 2 3 26 26 H 1.09003 * 109.46721 * 303.95160 * 1 2 3 27 27 H 1.08998 * 109.47220 * 63.95170 * 1 2 3 28 28 H 1.09001 * 109.46346 * 186.04802 * 3 2 1 29 29 H 1.08994 * 109.47391 * 306.04219 * 3 2 1 30 30 H 1.09000 * 109.47183 * 299.99665 * 4 3 2 31 31 H 1.09002 * 109.47124 * 59.99596 * 4 3 2 32 32 H 1.09001 * 109.46988 * 300.00190 * 5 4 3 33 33 H 1.08996 * 109.46446 * 60.00049 * 5 4 3 34 34 H 0.96701 * 113.99125 * 179.97438 * 6 5 4 35 35 H 1.08996 * 109.51776 * 178.82645 * 7 2 1 36 36 H 1.09000 * 109.50668 * 57.68369 * 8 7 2 37 37 H 1.08999 * 109.50680 * 297.57082 * 8 7 2 38 38 H 1.08999 * 109.46700 * 180.80460 * 9 8 7 39 39 H 1.09001 * 109.45697 * 60.83587 * 9 8 7 40 40 H 1.09001 * 109.46712 * 50.00147 * 11 10 9 41 41 H 1.09002 * 109.47411 * 290.00258 * 11 10 9 42 42 H 1.09001 * 109.46652 * 60.00371 * 12 11 10 43 43 H 1.08992 * 109.47514 * 300.00460 * 12 11 10 44 44 H 1.09002 * 109.47398 * 300.00496 * 13 12 11 45 45 H 1.09001 * 109.47194 * 60.00677 * 13 12 11 46 46 H 0.96999 * 120.00138 * 179.97438 * 18 17 15 47 47 H 1.09004 * 109.46425 * 58.27501 * 23 10 9 48 48 H 1.09002 * 109.45789 * 178.23868 * 23 10 9 49 49 H 1.08996 * 109.50601 * 299.24170 * 24 23 10 50 50 H 1.09006 * 109.50179 * 179.12409 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6315 2.0574 1.3183 5 6 2.1803 3.4857 1.3186 6 8 1.8398 4.1265 2.5496 7 6 1.9954 -0.7660 -1.1377 8 6 1.5266 -2.2200 -1.0363 9 6 2.0283 -2.9987 -2.2544 10 7 1.5064 -2.3816 -3.4805 11 6 1.8535 -3.1827 -4.6620 12 6 1.0914 -2.6537 -5.8786 13 6 1.4525 -3.4884 -7.1090 14 16 0.5515 -2.8621 -8.5485 15 6 1.1383 -3.9730 -9.7838 16 1 1.8461 -4.7459 -9.5228 17 6 0.6916 -3.8543 -11.0927 18 7 1.1304 -4.6839 -12.0157 19 14 -0.5310 -2.5162 -11.5445 20 1 0.2034 -1.2898 -11.9464 21 1 -1.3765 -2.9793 -12.6741 22 1 -1.3919 -2.2161 -10.3723 23 6 1.9821 -0.9997 -3.6234 24 6 1.4789 -0.1614 -2.4461 25 1 -0.3633 -1.0251 0.0708 26 1 -0.3633 0.5740 0.8525 27 1 -0.3633 0.4513 -0.9233 28 1 3.0797 1.3444 -0.1083 29 1 1.5612 1.9274 -0.8309 30 1 0.5472 2.0844 1.4266 31 1 2.0659 1.5014 2.1492 32 1 3.2646 3.4583 1.2104 33 1 1.7462 4.0417 0.4877 34 1 2.1570 5.0373 2.6196 35 1 3.0848 -0.7329 -1.1262 36 1 0.4373 -2.2501 -1.0086 37 1 1.9267 -2.6689 -0.1273 38 1 1.6841 -4.0311 -2.1925 39 1 3.1180 -2.9799 -2.2738 40 1 1.5818 -4.2238 -4.4876 41 1 2.9256 -3.1129 -4.8461 42 1 1.3631 -1.6126 -6.0529 43 1 0.0194 -2.7235 -5.6945 44 1 2.5246 -3.4190 -7.2934 45 1 1.1804 -4.5294 -6.9344 46 1 0.8180 -4.6012 -12.9302 47 1 3.0720 -0.9903 -3.6364 48 1 1.6043 -0.5802 -4.5558 49 1 0.3889 -0.1590 -2.4406 50 1 1.8451 0.8606 -2.5444 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173894806.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:39 Heat of formation + Delta-G solvation = -84.943667 kcal Electronic energy + Delta-G solvation = -24196.632412 eV Core-core repulsion = 20769.191872 eV Total energy + Delta-G solvation = -3427.440540 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.78658 -38.65392 -37.66130 -35.27920 -34.69187 -33.23535 -31.85192 -31.17119 -28.06086 -27.89713 -26.96528 -25.11966 -24.36891 -23.08575 -21.89050 -21.65884 -20.23447 -19.61293 -18.25750 -17.40079 -17.10926 -16.83752 -16.76745 -16.48489 -16.12520 -15.73784 -15.41282 -15.23140 -15.03182 -14.94200 -14.65708 -14.43138 -14.10607 -13.76142 -13.63774 -13.43786 -13.34393 -13.07394 -12.98198 -12.74195 -12.68253 -12.43258 -12.38920 -12.08858 -11.94016 -11.92681 -11.84604 -11.75714 -11.59353 -11.31974 -11.21221 -11.16759 -10.86471 -10.56841 -9.28787 -9.18668 -8.99824 -8.52719 -6.24030 1.11996 1.31118 1.47254 1.73737 2.24160 2.67636 2.77854 2.85239 2.93055 3.50986 3.79229 3.82384 3.94378 4.00215 4.05714 4.14158 4.23820 4.27329 4.31241 4.32539 4.40661 4.46665 4.48064 4.53351 4.55883 4.62551 4.66586 4.67889 4.74221 4.74916 4.78153 4.80424 4.95211 4.99421 5.06893 5.09982 5.16870 5.18581 5.22671 5.26893 5.30064 5.41338 5.68784 6.04180 6.08992 6.13446 6.16377 6.19498 6.88648 6.91321 8.60342 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.024346 B = 0.001959 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.797448 B =14292.120415 C =15031.221608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.539 5.539 3 C 0.059 3.941 4 C -0.113 4.113 5 C 0.076 3.924 6 O -0.598 6.598 7 C 0.089 3.911 8 C -0.101 4.101 9 C 0.057 3.943 10 N -0.545 5.545 11 C 0.069 3.931 12 C -0.083 4.083 13 C -0.069 4.069 14 S -0.221 6.221 15 C -0.524 4.524 16 H 0.050 0.950 17 C 0.038 3.962 18 N -0.922 5.922 19 Si 0.926 3.074 20 H -0.261 1.261 21 H -0.263 1.263 22 H -0.229 1.229 23 C 0.056 3.944 24 C -0.141 4.141 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.029 0.971 28 H 0.080 0.920 29 H 0.040 0.960 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.398 0.602 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.035 0.965 40 H 0.080 0.920 41 H 0.035 0.965 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.063 0.937 45 H 0.066 0.934 46 H 0.277 0.723 47 H 0.034 0.966 48 H 0.071 0.929 49 H 0.068 0.932 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.203 14.886 29.262 32.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.262 5.262 3 C -0.068 4.068 4 C -0.151 4.151 5 C -0.002 4.002 6 O -0.407 6.407 7 C -0.020 4.020 8 C -0.139 4.139 9 C -0.071 4.071 10 N -0.270 5.270 11 C -0.060 4.060 12 C -0.122 4.122 13 C -0.218 4.218 14 S 0.007 5.993 15 C -0.671 4.671 16 H 0.068 0.932 17 C -0.167 4.167 18 N -0.560 5.560 19 Si 0.747 3.253 20 H -0.186 1.186 21 H -0.187 1.187 22 H -0.153 1.153 23 C -0.073 4.073 24 C -0.180 4.180 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.048 0.952 28 H 0.098 0.902 29 H 0.058 0.942 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.248 0.752 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.054 0.946 40 H 0.099 0.901 41 H 0.054 0.946 42 H 0.086 0.914 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.052 0.948 48 H 0.089 0.911 49 H 0.086 0.914 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.849 14.888 29.587 33.133 hybrid contribution 1.538 -0.176 -1.809 2.381 sum 2.387 14.712 27.778 31.524 Atomic orbital electron populations 1.22525 0.87364 1.02682 1.00670 1.62218 1.08412 1.13570 1.41980 1.21971 1.00531 0.88211 0.96135 1.21447 1.01456 0.94280 0.97931 1.22152 0.99102 0.93109 0.85858 1.86420 1.81948 1.33044 1.39283 1.21749 0.99189 0.93634 0.87398 1.21588 1.01667 0.93649 0.97016 1.22112 0.97284 0.98755 0.88960 1.61902 1.60456 1.02329 1.02276 1.21970 0.97252 0.97785 0.89001 1.21210 1.01286 0.98744 0.90953 1.23081 1.01263 1.02110 0.95378 1.83844 1.62461 1.47605 1.05341 1.22351 1.30936 1.18054 0.95768 0.93202 1.25788 0.97662 0.98209 0.95045 1.70039 1.44580 1.38371 1.02993 0.85704 0.80005 0.79117 0.80458 1.18570 1.18707 1.15289 1.22072 0.97351 0.88747 0.99098 1.22201 1.01858 0.98908 0.95059 0.90938 0.91062 0.95217 0.90169 0.94156 0.91948 0.91662 0.92453 0.92834 0.75236 0.90236 0.91307 0.90112 0.90036 0.94646 0.90143 0.94633 0.91431 0.91094 0.91807 0.91517 0.91401 0.94803 0.91110 0.91384 0.90973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 8.62 127.69 1.10 1.32 16 2 N -0.54 -7.80 4.75 -896.59 -4.26 -12.07 16 3 C 0.06 0.73 4.41 86.30 0.38 1.11 16 4 C -0.11 -1.46 5.51 30.60 0.17 -1.29 16 5 C 0.08 0.79 7.05 71.98 0.51 1.30 16 6 O -0.60 -7.69 13.66 -148.98 -2.04 -9.72 16 7 C 0.09 1.32 2.29 44.99 0.10 1.43 16 8 C -0.10 -1.54 5.24 30.64 0.16 -1.38 16 9 C 0.06 0.98 5.46 86.32 0.47 1.45 16 10 N -0.54 -11.47 4.66 -896.34 -4.17 -15.65 16 11 C 0.07 1.66 4.96 86.30 0.43 2.08 16 12 C -0.08 -2.45 5.15 30.59 0.16 -2.29 16 13 C -0.07 -2.65 5.67 71.98 0.41 -2.24 16 14 S -0.22 -10.69 19.41 -56.49 -1.10 -11.79 16 15 C -0.52 -31.17 10.04 67.96 0.68 -30.49 16 16 H 0.05 3.23 8.03 -2.91 -0.02 3.20 16 17 C 0.04 2.23 5.50 84.86 0.47 2.70 16 18 N -0.92 -57.03 13.97 21.65 0.30 -56.73 16 19 Si 0.93 44.37 27.74 68.60 1.90 46.27 16 20 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 21 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 22 H -0.23 -10.62 6.74 99.48 0.67 -9.94 16 23 C 0.06 1.09 5.29 86.32 0.46 1.55 16 24 C -0.14 -2.30 4.69 30.64 0.14 -2.15 16 25 H 0.07 1.03 6.28 -2.39 -0.02 1.02 16 26 H 0.07 0.95 6.30 -2.39 -0.02 0.93 16 27 H 0.03 0.44 6.23 -2.39 -0.01 0.42 16 28 H 0.08 0.90 8.00 -2.39 -0.02 0.88 16 29 H 0.04 0.49 7.01 -2.39 -0.02 0.47 16 30 H 0.06 0.90 6.47 -2.39 -0.02 0.88 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.40 1.42 9.12 -74.06 -0.68 0.75 16 35 H 0.08 1.20 8.03 -2.39 -0.02 1.18 16 36 H 0.07 1.15 6.32 -2.39 -0.02 1.13 16 37 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.08 1.35 8.02 -2.39 -0.02 1.33 16 39 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.08 1.86 7.99 -2.39 -0.02 1.84 16 41 H 0.04 0.84 8.12 -2.39 -0.02 0.82 16 42 H 0.07 1.98 6.43 -2.39 -0.02 1.96 16 43 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.06 2.45 8.14 -2.39 -0.02 2.44 16 45 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 46 H 0.28 15.75 8.31 -92.71 -0.77 14.98 16 47 H 0.03 0.65 8.14 -2.38 -0.02 0.63 16 48 H 0.07 1.54 6.21 -2.39 -0.01 1.53 16 49 H 0.07 1.25 6.27 -2.39 -0.01 1.24 16 50 H 0.07 1.06 6.90 -2.38 -0.02 1.05 16 Total: -1.00 -68.65 388.33 -3.54 -72.18 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: 0.19 Total: 14.41 kcal Atomic # 6 Polarization: -32.54 SS G_CDS: 5.64 Total: -26.91 kcal Atomic # 7 Polarization: -76.31 SS G_CDS: -8.13 Total: -84.44 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: -2.04 Total: -9.72 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.90 Total: 46.27 kcal Atomic # 16 Polarization: -10.69 SS G_CDS: -1.10 Total: -11.79 kcal Total: -68.65 -3.54 -72.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173894806.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.760 kcal (2) G-P(sol) polarization free energy of solvation -68.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds