Wall clock time and date at job start Tue Mar 31 2020 10:54:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46907 * 1
3 3 C 1.46902 * 110.99636 * 2 1
4 4 C 1.52997 * 109.47031 * 66.05021 * 3 2 1
5 5 C 1.53008 * 109.47059 * 179.97438 * 4 3 2
6 6 O 1.42897 * 109.46842 * 179.97438 * 5 4 3
7 7 C 1.46903 * 110.99572 * 236.04836 * 2 1 3
8 8 C 1.53110 * 109.52345 * 298.95206 * 7 2 1
9 9 C 1.53032 * 109.27921 * 177.62504 * 8 7 2
10 10 N 1.46852 * 109.52437 * 300.82148 * 9 8 7
11 11 C 1.46902 * 110.99971 * 185.83517 * 10 9 8
12 12 C 1.53001 * 109.46901 * 169.99744 * 11 10 9
13 13 C 1.53000 * 109.46886 * 180.02562 * 12 11 10
14 14 S 1.81002 * 109.47004 * 180.02562 * 13 12 11
15 15 C 1.76193 * 100.00049 * 180.02562 * 14 13 12
16 16 H 1.08005 * 120.00026 * 359.97438 * 15 14 13
17 17 C 1.38806 * 120.00056 * 180.02562 * 15 14 13
18 18 N 1.31631 * 120.00121 * 179.97438 * 17 15 14
19 19 Si 1.86799 * 119.99856 * 0.02562 * 17 15 14
20 20 H 1.48489 * 109.47437 * 89.99924 * 19 17 15
21 21 H 1.48500 * 109.46931 * 210.00082 * 19 17 15
22 22 H 1.48503 * 109.46655 * 329.99597 * 19 17 15
23 23 C 1.46848 * 111.19424 * 61.74147 * 10 9 8
24 24 C 1.53034 * 109.52086 * 298.25597 * 23 10 9
25 25 H 1.08993 * 109.47124 * 183.95187 * 1 2 3
26 26 H 1.09003 * 109.46721 * 303.95160 * 1 2 3
27 27 H 1.08998 * 109.47220 * 63.95170 * 1 2 3
28 28 H 1.09001 * 109.46346 * 186.04802 * 3 2 1
29 29 H 1.08994 * 109.47391 * 306.04219 * 3 2 1
30 30 H 1.09000 * 109.47183 * 299.99665 * 4 3 2
31 31 H 1.09002 * 109.47124 * 59.99596 * 4 3 2
32 32 H 1.09001 * 109.46988 * 300.00190 * 5 4 3
33 33 H 1.08996 * 109.46446 * 60.00049 * 5 4 3
34 34 H 0.96701 * 113.99125 * 179.97438 * 6 5 4
35 35 H 1.08996 * 109.51776 * 178.82645 * 7 2 1
36 36 H 1.09000 * 109.50668 * 57.68369 * 8 7 2
37 37 H 1.08999 * 109.50680 * 297.57082 * 8 7 2
38 38 H 1.08999 * 109.46700 * 180.80460 * 9 8 7
39 39 H 1.09001 * 109.45697 * 60.83587 * 9 8 7
40 40 H 1.09001 * 109.46712 * 50.00147 * 11 10 9
41 41 H 1.09002 * 109.47411 * 290.00258 * 11 10 9
42 42 H 1.09001 * 109.46652 * 60.00371 * 12 11 10
43 43 H 1.08992 * 109.47514 * 300.00460 * 12 11 10
44 44 H 1.09002 * 109.47398 * 300.00496 * 13 12 11
45 45 H 1.09001 * 109.47194 * 60.00677 * 13 12 11
46 46 H 0.96999 * 120.00138 * 179.97438 * 18 17 15
47 47 H 1.09004 * 109.46425 * 58.27501 * 23 10 9
48 48 H 1.09002 * 109.45789 * 178.23868 * 23 10 9
49 49 H 1.08996 * 109.50601 * 299.24170 * 24 23 10
50 50 H 1.09006 * 109.50179 * 179.12409 * 24 23 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4691 0.0000 0.0000
3 6 1.9954 1.3715 0.0000
4 6 1.6315 2.0574 1.3183
5 6 2.1803 3.4857 1.3186
6 8 1.8398 4.1265 2.5496
7 6 1.9954 -0.7660 -1.1377
8 6 1.5266 -2.2200 -1.0363
9 6 2.0283 -2.9987 -2.2544
10 7 1.5064 -2.3816 -3.4805
11 6 1.8535 -3.1827 -4.6620
12 6 1.0914 -2.6537 -5.8786
13 6 1.4525 -3.4884 -7.1090
14 16 0.5515 -2.8621 -8.5485
15 6 1.1383 -3.9730 -9.7838
16 1 1.8461 -4.7459 -9.5228
17 6 0.6916 -3.8543 -11.0927
18 7 1.1304 -4.6839 -12.0157
19 14 -0.5310 -2.5162 -11.5445
20 1 0.2034 -1.2898 -11.9464
21 1 -1.3765 -2.9793 -12.6741
22 1 -1.3919 -2.2161 -10.3723
23 6 1.9821 -0.9997 -3.6234
24 6 1.4789 -0.1614 -2.4461
25 1 -0.3633 -1.0251 0.0708
26 1 -0.3633 0.5740 0.8525
27 1 -0.3633 0.4513 -0.9233
28 1 3.0797 1.3444 -0.1083
29 1 1.5612 1.9274 -0.8309
30 1 0.5472 2.0844 1.4266
31 1 2.0659 1.5014 2.1492
32 1 3.2646 3.4583 1.2104
33 1 1.7462 4.0417 0.4877
34 1 2.1570 5.0373 2.6196
35 1 3.0848 -0.7329 -1.1262
36 1 0.4373 -2.2501 -1.0086
37 1 1.9267 -2.6689 -0.1273
38 1 1.6841 -4.0311 -2.1925
39 1 3.1180 -2.9799 -2.2738
40 1 1.5818 -4.2238 -4.4876
41 1 2.9256 -3.1129 -4.8461
42 1 1.3631 -1.6126 -6.0529
43 1 0.0194 -2.7235 -5.6945
44 1 2.5246 -3.4190 -7.2934
45 1 1.1804 -4.5294 -6.9344
46 1 0.8180 -4.6012 -12.9302
47 1 3.0720 -0.9903 -3.6364
48 1 1.6043 -0.5802 -4.5558
49 1 0.3889 -0.1590 -2.4406
50 1 1.8451 0.8606 -2.5444
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000173894806.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:54:39
Heat of formation + Delta-G solvation = -84.943667 kcal
Electronic energy + Delta-G solvation = -24196.632412 eV
Core-core repulsion = 20769.191872 eV
Total energy + Delta-G solvation = -3427.440540 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 316.193 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-40.78658 -38.65392 -37.66130 -35.27920 -34.69187 -33.23535 -31.85192 -31.17119
-28.06086 -27.89713 -26.96528 -25.11966 -24.36891 -23.08575 -21.89050 -21.65884
-20.23447 -19.61293 -18.25750 -17.40079 -17.10926 -16.83752 -16.76745 -16.48489
-16.12520 -15.73784 -15.41282 -15.23140 -15.03182 -14.94200 -14.65708 -14.43138
-14.10607 -13.76142 -13.63774 -13.43786 -13.34393 -13.07394 -12.98198 -12.74195
-12.68253 -12.43258 -12.38920 -12.08858 -11.94016 -11.92681 -11.84604 -11.75714
-11.59353 -11.31974 -11.21221 -11.16759 -10.86471 -10.56841 -9.28787 -9.18668
-8.99824 -8.52719 -6.24030 1.11996 1.31118 1.47254 1.73737 2.24160
2.67636 2.77854 2.85239 2.93055 3.50986 3.79229 3.82384 3.94378
4.00215 4.05714 4.14158 4.23820 4.27329 4.31241 4.32539 4.40661
4.46665 4.48064 4.53351 4.55883 4.62551 4.66586 4.67889 4.74221
4.74916 4.78153 4.80424 4.95211 4.99421 5.06893 5.09982 5.16870
5.18581 5.22671 5.26893 5.30064 5.41338 5.68784 6.04180 6.08992
6.13446 6.16377 6.19498 6.88648 6.91321 8.60342
Molecular weight = 316.19amu
Principal moments of inertia in cm(-1)
A = 0.024346 B = 0.001959 C = 0.001862
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1149.797448 B =14292.120415 C =15031.221608
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.015 3.985
2 N -0.539 5.539
3 C 0.059 3.941
4 C -0.113 4.113
5 C 0.076 3.924
6 O -0.598 6.598
7 C 0.089 3.911
8 C -0.101 4.101
9 C 0.057 3.943
10 N -0.545 5.545
11 C 0.069 3.931
12 C -0.083 4.083
13 C -0.069 4.069
14 S -0.221 6.221
15 C -0.524 4.524
16 H 0.050 0.950
17 C 0.038 3.962
18 N -0.922 5.922
19 Si 0.926 3.074
20 H -0.261 1.261
21 H -0.263 1.263
22 H -0.229 1.229
23 C 0.056 3.944
24 C -0.141 4.141
25 H 0.072 0.928
26 H 0.071 0.929
27 H 0.029 0.971
28 H 0.080 0.920
29 H 0.040 0.960
30 H 0.062 0.938
31 H 0.065 0.935
32 H 0.057 0.943
33 H 0.053 0.947
34 H 0.398 0.602
35 H 0.079 0.921
36 H 0.068 0.932
37 H 0.080 0.920
38 H 0.081 0.919
39 H 0.035 0.965
40 H 0.080 0.920
41 H 0.035 0.965
42 H 0.067 0.933
43 H 0.070 0.930
44 H 0.063 0.937
45 H 0.066 0.934
46 H 0.277 0.723
47 H 0.034 0.966
48 H 0.071 0.929
49 H 0.068 0.932
50 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.203 14.886 29.262 32.905
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 N -0.262 5.262
3 C -0.068 4.068
4 C -0.151 4.151
5 C -0.002 4.002
6 O -0.407 6.407
7 C -0.020 4.020
8 C -0.139 4.139
9 C -0.071 4.071
10 N -0.270 5.270
11 C -0.060 4.060
12 C -0.122 4.122
13 C -0.218 4.218
14 S 0.007 5.993
15 C -0.671 4.671
16 H 0.068 0.932
17 C -0.167 4.167
18 N -0.560 5.560
19 Si 0.747 3.253
20 H -0.186 1.186
21 H -0.187 1.187
22 H -0.153 1.153
23 C -0.073 4.073
24 C -0.180 4.180
25 H 0.091 0.909
26 H 0.089 0.911
27 H 0.048 0.952
28 H 0.098 0.902
29 H 0.058 0.942
30 H 0.081 0.919
31 H 0.083 0.917
32 H 0.075 0.925
33 H 0.072 0.928
34 H 0.248 0.752
35 H 0.098 0.902
36 H 0.087 0.913
37 H 0.099 0.901
38 H 0.100 0.900
39 H 0.054 0.946
40 H 0.099 0.901
41 H 0.054 0.946
42 H 0.086 0.914
43 H 0.089 0.911
44 H 0.082 0.918
45 H 0.085 0.915
46 H 0.086 0.914
47 H 0.052 0.948
48 H 0.089 0.911
49 H 0.086 0.914
50 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges 0.849 14.888 29.587 33.133
hybrid contribution 1.538 -0.176 -1.809 2.381
sum 2.387 14.712 27.778 31.524
Atomic orbital electron populations
1.22525 0.87364 1.02682 1.00670 1.62218 1.08412 1.13570 1.41980
1.21971 1.00531 0.88211 0.96135 1.21447 1.01456 0.94280 0.97931
1.22152 0.99102 0.93109 0.85858 1.86420 1.81948 1.33044 1.39283
1.21749 0.99189 0.93634 0.87398 1.21588 1.01667 0.93649 0.97016
1.22112 0.97284 0.98755 0.88960 1.61902 1.60456 1.02329 1.02276
1.21970 0.97252 0.97785 0.89001 1.21210 1.01286 0.98744 0.90953
1.23081 1.01263 1.02110 0.95378 1.83844 1.62461 1.47605 1.05341
1.22351 1.30936 1.18054 0.95768 0.93202 1.25788 0.97662 0.98209
0.95045 1.70039 1.44580 1.38371 1.02993 0.85704 0.80005 0.79117
0.80458 1.18570 1.18707 1.15289 1.22072 0.97351 0.88747 0.99098
1.22201 1.01858 0.98908 0.95059 0.90938 0.91062 0.95217 0.90169
0.94156 0.91948 0.91662 0.92453 0.92834 0.75236 0.90236 0.91307
0.90112 0.90036 0.94646 0.90143 0.94633 0.91431 0.91094 0.91807
0.91517 0.91401 0.94803 0.91110 0.91384 0.90973
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.22 8.62 127.69 1.10 1.32 16
2 N -0.54 -7.80 4.75 -896.59 -4.26 -12.07 16
3 C 0.06 0.73 4.41 86.30 0.38 1.11 16
4 C -0.11 -1.46 5.51 30.60 0.17 -1.29 16
5 C 0.08 0.79 7.05 71.98 0.51 1.30 16
6 O -0.60 -7.69 13.66 -148.98 -2.04 -9.72 16
7 C 0.09 1.32 2.29 44.99 0.10 1.43 16
8 C -0.10 -1.54 5.24 30.64 0.16 -1.38 16
9 C 0.06 0.98 5.46 86.32 0.47 1.45 16
10 N -0.54 -11.47 4.66 -896.34 -4.17 -15.65 16
11 C 0.07 1.66 4.96 86.30 0.43 2.08 16
12 C -0.08 -2.45 5.15 30.59 0.16 -2.29 16
13 C -0.07 -2.65 5.67 71.98 0.41 -2.24 16
14 S -0.22 -10.69 19.41 -56.49 -1.10 -11.79 16
15 C -0.52 -31.17 10.04 67.96 0.68 -30.49 16
16 H 0.05 3.23 8.03 -2.91 -0.02 3.20 16
17 C 0.04 2.23 5.50 84.86 0.47 2.70 16
18 N -0.92 -57.03 13.97 21.65 0.30 -56.73 16
19 Si 0.93 44.37 27.74 68.60 1.90 46.27 16
20 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16
21 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16
22 H -0.23 -10.62 6.74 99.48 0.67 -9.94 16
23 C 0.06 1.09 5.29 86.32 0.46 1.55 16
24 C -0.14 -2.30 4.69 30.64 0.14 -2.15 16
25 H 0.07 1.03 6.28 -2.39 -0.02 1.02 16
26 H 0.07 0.95 6.30 -2.39 -0.02 0.93 16
27 H 0.03 0.44 6.23 -2.39 -0.01 0.42 16
28 H 0.08 0.90 8.00 -2.39 -0.02 0.88 16
29 H 0.04 0.49 7.01 -2.39 -0.02 0.47 16
30 H 0.06 0.90 6.47 -2.39 -0.02 0.88 16
31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16
32 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16
33 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16
34 H 0.40 1.42 9.12 -74.06 -0.68 0.75 16
35 H 0.08 1.20 8.03 -2.39 -0.02 1.18 16
36 H 0.07 1.15 6.32 -2.39 -0.02 1.13 16
37 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16
38 H 0.08 1.35 8.02 -2.39 -0.02 1.33 16
39 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16
40 H 0.08 1.86 7.99 -2.39 -0.02 1.84 16
41 H 0.04 0.84 8.12 -2.39 -0.02 0.82 16
42 H 0.07 1.98 6.43 -2.39 -0.02 1.96 16
43 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16
44 H 0.06 2.45 8.14 -2.39 -0.02 2.44 16
45 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16
46 H 0.28 15.75 8.31 -92.71 -0.77 14.98 16
47 H 0.03 0.65 8.14 -2.38 -0.02 0.63 16
48 H 0.07 1.54 6.21 -2.39 -0.01 1.53 16
49 H 0.07 1.25 6.27 -2.39 -0.01 1.24 16
50 H 0.07 1.06 6.90 -2.38 -0.02 1.05 16
Total: -1.00 -68.65 388.33 -3.54 -72.18
By element:
Atomic # 1 Polarization: 14.22 SS G_CDS: 0.19 Total: 14.41 kcal
Atomic # 6 Polarization: -32.54 SS G_CDS: 5.64 Total: -26.91 kcal
Atomic # 7 Polarization: -76.31 SS G_CDS: -8.13 Total: -84.44 kcal
Atomic # 8 Polarization: -7.69 SS G_CDS: -2.04 Total: -9.72 kcal
Atomic # 14 Polarization: 44.37 SS G_CDS: 1.90 Total: 46.27 kcal
Atomic # 16 Polarization: -10.69 SS G_CDS: -1.10 Total: -11.79 kcal
Total: -68.65 -3.54 -72.18 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000173894806.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -12.760 kcal
(2) G-P(sol) polarization free energy of solvation -68.648 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.408 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.536 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.184 kcal
(6) G-S(sol) free energy of system = (1) + (5) -84.944 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds