Wall clock time and date at job start Tue Mar 31 2020 10:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46973 * 2 1 4 4 O 1.42904 * 109.46606 * 240.00060 * 2 1 3 5 5 C 1.42895 * 114.00389 * 269.99719 * 4 2 1 6 6 C 1.52998 * 109.47079 * 180.02562 * 5 4 2 7 7 N 1.46894 * 109.47290 * 65.05904 * 6 5 4 8 8 C 1.46952 * 111.00136 * 199.57674 * 7 6 5 9 9 C 1.53051 * 109.36829 * 176.80946 * 8 7 6 10 10 N 1.46960 * 109.36366 * 58.39966 * 9 8 7 11 11 C 1.46894 * 111.00207 * 176.81261 * 10 9 8 12 12 C 1.53002 * 109.47367 * 293.80158 * 11 10 9 13 13 C 1.53001 * 109.47384 * 179.97438 * 12 11 10 14 14 S 1.81001 * 109.47126 * 179.97438 * 13 12 11 15 15 C 1.76198 * 100.00008 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99778 * 0.02562 * 15 14 13 17 17 C 1.38793 * 120.00207 * 180.02562 * 15 14 13 18 18 N 1.31634 * 119.99725 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00378 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47136 * 89.99465 * 19 17 15 21 21 H 1.48503 * 109.47340 * 210.00145 * 19 17 15 22 22 H 1.48506 * 109.46797 * 329.99747 * 19 17 15 23 23 C 1.46952 * 110.88014 * 300.68348 * 10 9 8 24 24 C 1.46960 * 111.00207 * 75.77507 * 7 6 5 25 25 H 1.08996 * 109.47568 * 59.99597 * 1 2 3 26 26 H 1.09004 * 109.46879 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46696 * 299.99512 * 1 2 3 28 28 H 1.08999 * 109.47072 * 120.00495 * 2 1 3 29 29 H 1.08996 * 109.47303 * 300.00566 * 3 2 1 30 30 H 1.08998 * 109.46756 * 60.00817 * 3 2 1 31 31 H 1.09001 * 109.46809 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.47408 * 300.00474 * 5 4 2 33 33 H 1.09004 * 109.46824 * 60.00150 * 5 4 2 34 34 H 1.09003 * 109.46866 * 185.05834 * 6 5 4 35 35 H 1.08998 * 109.47417 * 305.05372 * 6 5 4 36 36 H 1.09007 * 109.49011 * 296.77868 * 8 7 6 37 37 H 1.09000 * 109.48885 * 56.84228 * 8 7 6 38 38 H 1.09000 * 109.48789 * 298.43368 * 9 8 7 39 39 H 1.08999 * 109.49012 * 178.36841 * 9 8 7 40 40 H 1.09006 * 109.47119 * 53.79923 * 11 10 9 41 41 H 1.08998 * 109.47726 * 173.80117 * 11 10 9 42 42 H 1.08995 * 109.46917 * 300.00437 * 12 11 10 43 43 H 1.09007 * 109.47131 * 59.99798 * 12 11 10 44 44 H 1.08993 * 109.47189 * 299.99962 * 13 12 11 45 45 H 1.08997 * 109.46814 * 60.00157 * 13 12 11 46 46 H 0.97001 * 119.99592 * 179.97438 * 18 17 15 47 47 H 1.09007 * 109.49011 * 299.35005 * 23 10 9 48 48 H 1.09000 * 109.48885 * 179.28645 * 23 10 9 49 49 H 1.08993 * 109.48585 * 303.15666 * 24 7 6 50 50 H 1.08999 * 109.48377 * 63.22326 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0062 -0.6737 -1.1668 5 6 2.2000 -2.0782 -0.9888 6 6 2.7089 -2.6923 -2.2944 7 7 4.0402 -2.1536 -2.6028 8 6 4.3657 -2.3354 -4.0242 9 6 5.7223 -1.6919 -4.3207 10 7 6.7491 -2.3040 -3.4658 11 6 8.0805 -1.7653 -3.7742 12 6 8.4876 -2.1892 -5.1868 13 6 9.8741 -1.6276 -5.5082 14 16 10.3560 -2.1297 -7.1790 15 6 11.9422 -1.3694 -7.2815 16 1 12.3241 -0.8022 -6.4456 17 6 12.7009 -1.4996 -8.4364 18 7 12.2356 -2.1915 -9.4550 19 14 14.3828 -0.6942 -8.5448 20 1 15.4174 -1.6407 -8.0558 21 1 14.6691 -0.3339 -9.9567 22 1 14.3991 0.5325 -7.7079 23 6 6.4237 -2.1223 -2.0444 24 6 5.0670 -2.7657 -1.7479 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9562 0.8901 31 1 3.1300 1.4425 -0.0005 32 1 2.9319 -2.2468 -0.1989 33 1 1.2537 -2.5433 -0.7126 34 1 2.7712 -3.7752 -2.1865 35 1 2.0212 -2.4469 -3.1037 36 1 4.4102 -3.4001 -4.2539 37 1 3.5976 -1.8628 -4.6365 38 1 5.6698 -0.6224 -4.1169 39 1 5.9791 -1.8507 -5.3680 40 1 8.0549 -0.6772 -3.7146 41 1 8.8040 -2.1516 -3.0563 42 1 8.5131 -3.2772 -5.2464 43 1 7.7641 -1.8029 -5.9048 44 1 9.8481 -0.5396 -5.4487 45 1 10.5977 -2.0136 -4.7903 46 1 12.7657 -2.2821 -10.2623 47 1 6.3792 -1.0576 -1.8147 48 1 7.1918 -2.5948 -1.4322 49 1 4.8102 -2.6069 -0.7007 50 1 5.1195 -3.8352 -1.9518 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174896592.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:58 Heat of formation + Delta-G solvation = -54.768280 kcal Electronic energy + Delta-G solvation = -24143.264936 eV Core-core repulsion = 20717.132898 eV Total energy + Delta-G solvation = -3426.132038 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.193 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.60717 -38.51004 -36.22484 -33.42400 -32.49396 -32.35315 -31.04229 -29.62455 -27.59059 -26.64347 -25.56086 -24.18589 -23.48993 -22.00192 -21.61362 -20.69266 -19.83367 -17.44630 -17.20785 -16.59373 -15.76485 -15.48612 -15.27946 -14.92921 -14.78563 -14.71760 -14.63877 -14.37116 -13.97563 -13.83935 -13.30190 -13.18062 -12.87015 -12.80293 -12.57710 -12.39280 -12.08484 -11.92896 -11.84107 -11.69947 -11.54762 -11.34549 -11.27233 -11.05739 -11.04530 -10.91382 -10.77660 -10.66935 -10.54199 -10.17263 -9.79495 -9.48478 -9.02861 -8.51210 -8.26778 -8.24434 -6.48808 -6.19751 -3.89520 3.23626 3.24342 3.31068 3.38230 3.57115 3.65422 3.97257 4.25875 4.49888 4.65402 4.71827 4.73849 4.84225 4.93393 4.97052 5.05360 5.10457 5.14209 5.16212 5.23168 5.25017 5.34087 5.39233 5.41358 5.42536 5.44114 5.48712 5.52573 5.55246 5.63640 5.72786 5.78795 5.82341 5.82858 5.87769 5.89503 5.93082 6.04142 6.15127 6.40384 6.64487 6.76425 6.82628 6.85083 7.06263 7.13917 7.16527 7.63571 8.39770 9.26519 10.88441 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.030864 B = 0.001842 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.975150 B =15194.192982 C =15499.904673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.080 3.920 3 C -0.148 4.148 4 O -0.364 6.364 5 C 0.070 3.930 6 C 0.056 3.944 7 N -0.531 5.531 8 C 0.060 3.940 9 C 0.054 3.946 10 N -0.540 5.540 11 C 0.061 3.939 12 C -0.093 4.093 13 C -0.112 4.112 14 S -0.133 6.133 15 C -0.516 4.516 16 H 0.072 0.928 17 C 0.070 3.930 18 N -0.870 5.870 19 Si 0.918 3.082 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.272 1.272 23 C 0.058 3.942 24 C 0.058 3.942 25 H 0.063 0.937 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.047 0.953 33 H 0.048 0.952 34 H 0.051 0.949 35 H 0.082 0.918 36 H 0.042 0.958 37 H 0.079 0.921 38 H 0.042 0.958 39 H 0.087 0.913 40 H 0.033 0.967 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.064 0.936 44 H 0.058 0.942 45 H 0.059 0.941 46 H 0.267 0.733 47 H 0.040 0.960 48 H 0.077 0.923 49 H 0.074 0.926 50 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.145 1.035 20.454 30.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.022 3.978 3 C -0.206 4.206 4 O -0.283 6.283 5 C -0.007 4.007 6 C -0.072 4.072 7 N -0.256 5.256 8 C -0.068 4.068 9 C -0.074 4.074 10 N -0.265 5.265 11 C -0.068 4.068 12 C -0.132 4.132 13 C -0.262 4.262 14 S 0.096 5.904 15 C -0.664 4.664 16 H 0.090 0.910 17 C -0.138 4.138 18 N -0.506 5.506 19 Si 0.744 3.256 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.197 1.197 23 C -0.070 4.070 24 C -0.071 4.071 25 H 0.082 0.918 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.100 0.900 36 H 0.060 0.940 37 H 0.097 0.903 38 H 0.060 0.940 39 H 0.105 0.895 40 H 0.051 0.949 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.083 0.917 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.058 0.942 48 H 0.095 0.905 49 H 0.092 0.908 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -23.625 0.445 19.316 30.519 hybrid contribution 1.674 1.081 1.088 2.270 sum -21.951 1.526 20.404 30.009 Atomic orbital electron populations 1.22309 0.96339 1.02072 1.02509 1.22046 0.93277 0.94038 0.88482 1.21831 1.01994 0.94490 1.02236 1.88054 1.86265 1.19506 1.34522 1.22516 0.98329 0.82488 0.97414 1.22105 0.91182 0.96235 0.97681 1.62086 1.01201 1.57701 1.04607 1.22175 0.96886 0.99451 0.88289 1.22215 0.90250 0.96741 0.98213 1.62160 1.02424 1.58155 1.03713 1.22160 0.89235 0.97096 0.98278 1.21272 0.95614 1.01772 0.94495 1.23233 0.98101 1.02083 1.02750 1.84618 1.23063 1.70843 1.11916 1.22699 1.02161 1.37764 1.03785 0.90999 1.25012 0.98718 0.95286 0.94804 1.70029 1.37603 1.38473 1.04450 0.86172 0.82426 0.79460 0.77502 1.20287 1.20769 1.19719 1.22106 0.95985 0.99331 0.89615 1.22192 0.91124 0.96705 0.97040 0.91769 0.92729 0.91878 0.92693 0.91817 0.91615 0.91891 0.93499 0.93432 0.93133 0.89998 0.94016 0.90311 0.94020 0.89499 0.94897 0.90931 0.90870 0.91696 0.92363 0.92184 0.92348 0.94155 0.90483 0.90784 0.94057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.08 9.53 37.16 0.35 -0.72 16 2 C 0.08 0.59 3.34 -26.73 -0.09 0.51 16 3 C -0.15 -1.05 9.56 37.16 0.36 -0.70 16 4 O -0.36 -3.57 9.94 -35.23 -0.35 -3.92 16 5 C 0.07 0.54 5.94 37.16 0.22 0.77 16 6 C 0.06 0.47 5.39 -3.83 -0.02 0.45 16 7 N -0.53 -5.48 4.59 -234.47 -1.08 -6.56 16 8 C 0.06 0.65 5.56 -3.77 -0.02 0.63 16 9 C 0.05 0.67 5.41 -3.77 -0.02 0.65 16 10 N -0.54 -6.99 4.71 -234.47 -1.10 -8.10 16 11 C 0.06 0.87 4.96 -3.83 -0.02 0.85 16 12 C -0.09 -1.57 5.15 -26.73 -0.14 -1.71 16 13 C -0.11 -2.32 5.67 37.16 0.21 -2.11 16 14 S -0.13 -3.54 21.44 -107.50 -2.30 -5.84 16 15 C -0.52 -15.03 9.50 30.94 0.29 -14.74 16 16 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 17 C 0.07 2.03 5.49 -17.43 -0.10 1.94 16 18 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 19 Si 0.92 21.79 29.55 -169.99 -5.02 16.77 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 23 C 0.06 0.65 5.61 -3.77 -0.02 0.62 16 24 C 0.06 0.57 5.43 -3.77 -0.02 0.54 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.32 7.87 -51.93 -0.41 -0.09 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.36 7.79 -51.93 -0.40 -0.04 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.35 6.68 -51.93 -0.35 0.01 16 33 H 0.05 0.30 7.87 -51.93 -0.41 -0.11 16 34 H 0.05 0.37 8.00 -51.93 -0.42 -0.04 16 35 H 0.08 0.69 7.84 -51.93 -0.41 0.28 16 36 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.78 8.00 -51.93 -0.42 0.37 16 38 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.09 1.12 6.34 -51.93 -0.33 0.79 16 40 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 41 H 0.07 0.99 8.03 -51.93 -0.42 0.57 16 42 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.06 1.11 6.49 -51.92 -0.34 0.77 16 44 H 0.06 1.20 8.14 -51.92 -0.42 0.77 16 45 H 0.06 1.23 8.14 -51.92 -0.42 0.80 16 46 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 47 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.08 0.79 8.07 -51.93 -0.42 0.37 16 49 H 0.07 0.63 6.71 -51.93 -0.35 0.28 16 50 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 402.93 15.07 6.07 6.07 Total: -1.00 -31.92 402.93 -11.76 -43.68 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -9.70 Total: -3.52 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: 0.99 Total: -13.03 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: -1.45 Total: -40.21 kcal Atomic # 8 Polarization: -3.57 SS G_CDS: -0.35 Total: -3.92 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -2.30 Total: -5.84 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.92 -11.76 -43.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174896592.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.086 kcal (2) G-P(sol) polarization free energy of solvation -31.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds