Wall clock time and date at job start Tue Mar 31 2020 10:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46973 * 2 1 4 4 O 1.42904 * 109.46606 * 240.00060 * 2 1 3 5 5 C 1.42895 * 114.00389 * 269.99719 * 4 2 1 6 6 C 1.52998 * 109.47079 * 180.02562 * 5 4 2 7 7 N 1.46894 * 109.47290 * 65.05904 * 6 5 4 8 8 C 1.46952 * 111.00136 * 199.57674 * 7 6 5 9 9 C 1.53051 * 109.36829 * 176.80946 * 8 7 6 10 10 N 1.46960 * 109.36366 * 58.39966 * 9 8 7 11 11 C 1.46894 * 111.00207 * 176.81261 * 10 9 8 12 12 C 1.53002 * 109.47367 * 293.80158 * 11 10 9 13 13 C 1.53001 * 109.47384 * 179.97438 * 12 11 10 14 14 S 1.81001 * 109.47126 * 179.97438 * 13 12 11 15 15 C 1.76198 * 100.00008 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99778 * 0.02562 * 15 14 13 17 17 C 1.38793 * 120.00207 * 180.02562 * 15 14 13 18 18 N 1.31634 * 119.99725 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00378 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47136 * 89.99465 * 19 17 15 21 21 H 1.48503 * 109.47340 * 210.00145 * 19 17 15 22 22 H 1.48506 * 109.46797 * 329.99747 * 19 17 15 23 23 C 1.46952 * 110.88014 * 300.68348 * 10 9 8 24 24 C 1.46960 * 111.00207 * 75.77507 * 7 6 5 25 25 H 1.08996 * 109.47568 * 59.99597 * 1 2 3 26 26 H 1.09004 * 109.46879 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46696 * 299.99512 * 1 2 3 28 28 H 1.08999 * 109.47072 * 120.00495 * 2 1 3 29 29 H 1.08996 * 109.47303 * 300.00566 * 3 2 1 30 30 H 1.08998 * 109.46756 * 60.00817 * 3 2 1 31 31 H 1.09001 * 109.46809 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.47408 * 300.00474 * 5 4 2 33 33 H 1.09004 * 109.46824 * 60.00150 * 5 4 2 34 34 H 1.09003 * 109.46866 * 185.05834 * 6 5 4 35 35 H 1.08998 * 109.47417 * 305.05372 * 6 5 4 36 36 H 1.09007 * 109.49011 * 296.77868 * 8 7 6 37 37 H 1.09000 * 109.48885 * 56.84228 * 8 7 6 38 38 H 1.09000 * 109.48789 * 298.43368 * 9 8 7 39 39 H 1.08999 * 109.49012 * 178.36841 * 9 8 7 40 40 H 1.09006 * 109.47119 * 53.79923 * 11 10 9 41 41 H 1.08998 * 109.47726 * 173.80117 * 11 10 9 42 42 H 1.08995 * 109.46917 * 300.00437 * 12 11 10 43 43 H 1.09007 * 109.47131 * 59.99798 * 12 11 10 44 44 H 1.08993 * 109.47189 * 299.99962 * 13 12 11 45 45 H 1.08997 * 109.46814 * 60.00157 * 13 12 11 46 46 H 0.97001 * 119.99592 * 179.97438 * 18 17 15 47 47 H 1.09007 * 109.49011 * 299.35005 * 23 10 9 48 48 H 1.09000 * 109.48885 * 179.28645 * 23 10 9 49 49 H 1.08993 * 109.48585 * 303.15666 * 24 7 6 50 50 H 1.08999 * 109.48377 * 63.22326 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0062 -0.6737 -1.1668 5 6 2.2000 -2.0782 -0.9888 6 6 2.7089 -2.6923 -2.2944 7 7 4.0402 -2.1536 -2.6028 8 6 4.3657 -2.3354 -4.0242 9 6 5.7223 -1.6919 -4.3207 10 7 6.7491 -2.3040 -3.4658 11 6 8.0805 -1.7653 -3.7742 12 6 8.4876 -2.1892 -5.1868 13 6 9.8741 -1.6276 -5.5082 14 16 10.3560 -2.1297 -7.1790 15 6 11.9422 -1.3694 -7.2815 16 1 12.3241 -0.8022 -6.4456 17 6 12.7009 -1.4996 -8.4364 18 7 12.2356 -2.1915 -9.4550 19 14 14.3828 -0.6942 -8.5448 20 1 15.4174 -1.6407 -8.0558 21 1 14.6691 -0.3339 -9.9567 22 1 14.3991 0.5325 -7.7079 23 6 6.4237 -2.1223 -2.0444 24 6 5.0670 -2.7657 -1.7479 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9562 0.8901 31 1 3.1300 1.4425 -0.0005 32 1 2.9319 -2.2468 -0.1989 33 1 1.2537 -2.5433 -0.7126 34 1 2.7712 -3.7752 -2.1865 35 1 2.0212 -2.4469 -3.1037 36 1 4.4102 -3.4001 -4.2539 37 1 3.5976 -1.8628 -4.6365 38 1 5.6698 -0.6224 -4.1169 39 1 5.9791 -1.8507 -5.3680 40 1 8.0549 -0.6772 -3.7146 41 1 8.8040 -2.1516 -3.0563 42 1 8.5131 -3.2772 -5.2464 43 1 7.7641 -1.8029 -5.9048 44 1 9.8481 -0.5396 -5.4487 45 1 10.5977 -2.0136 -4.7903 46 1 12.7657 -2.2821 -10.2623 47 1 6.3792 -1.0576 -1.8147 48 1 7.1918 -2.5948 -1.4322 49 1 4.8102 -2.6069 -0.7007 50 1 5.1195 -3.8352 -1.9518 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174896592.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:57 Heat of formation + Delta-G solvation = -75.412634 kcal Electronic energy + Delta-G solvation = -24144.160142 eV Core-core repulsion = 20717.132898 eV Total energy + Delta-G solvation = -3427.027244 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.193 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.46241 -39.18750 -37.18214 -34.62732 -34.36359 -33.35798 -31.92189 -30.46317 -28.15685 -27.93350 -27.42721 -25.32148 -24.43754 -22.81528 -22.17332 -21.94060 -20.73649 -19.55093 -17.87473 -17.39597 -16.89605 -16.68885 -16.47089 -16.13666 -16.00901 -15.73326 -15.70607 -15.36137 -15.07593 -14.94557 -14.63896 -13.97471 -13.87734 -13.61531 -13.40983 -13.32065 -13.21854 -13.07647 -12.94296 -12.86761 -12.69040 -12.55611 -12.50445 -12.32299 -12.22853 -12.16422 -11.79355 -11.75112 -11.54039 -11.46101 -11.19949 -11.13636 -10.38491 -10.31580 -9.38906 -9.19023 -8.66439 -8.37224 -6.13547 1.31265 1.39412 1.48605 1.74384 2.28373 2.80595 2.87730 2.94574 2.96839 3.33025 3.87435 3.91025 3.95885 4.08033 4.09758 4.14845 4.22399 4.27473 4.32808 4.37134 4.38875 4.41997 4.50011 4.50923 4.56695 4.59750 4.60688 4.72690 4.76735 4.80458 4.84646 4.89932 4.92000 4.93449 4.97653 5.00107 5.05581 5.07116 5.19148 5.31161 5.32179 5.35541 5.39691 5.96424 6.00572 6.17850 6.18290 6.18729 6.50046 7.04821 8.72226 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.030864 B = 0.001842 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.975150 B =15194.192982 C =15499.904673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.074 3.926 3 C -0.147 4.147 4 O -0.391 6.391 5 C 0.070 3.930 6 C 0.056 3.944 7 N -0.543 5.543 8 C 0.066 3.934 9 C 0.055 3.945 10 N -0.545 5.545 11 C 0.072 3.928 12 C -0.080 4.080 13 C -0.087 4.087 14 S -0.197 6.197 15 C -0.539 4.539 16 H 0.072 0.928 17 C 0.015 3.985 18 N -0.907 5.907 19 Si 0.995 3.005 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.264 1.264 23 C 0.058 3.942 24 C 0.062 3.938 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.052 0.948 30 H 0.084 0.916 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.039 0.961 37 H 0.084 0.916 38 H 0.032 0.968 39 H 0.077 0.923 40 H 0.033 0.967 41 H 0.082 0.918 42 H 0.066 0.934 43 H 0.061 0.939 44 H 0.059 0.941 45 H 0.064 0.936 46 H 0.271 0.729 47 H 0.033 0.967 48 H 0.089 0.911 49 H 0.090 0.910 50 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.410 1.304 22.370 32.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.016 3.984 3 C -0.204 4.204 4 O -0.311 6.311 5 C -0.007 4.007 6 C -0.071 4.071 7 N -0.268 5.268 8 C -0.062 4.062 9 C -0.073 4.073 10 N -0.270 5.270 11 C -0.057 4.057 12 C -0.119 4.119 13 C -0.237 4.237 14 S 0.032 5.968 15 C -0.687 4.687 16 H 0.091 0.909 17 C -0.190 4.190 18 N -0.544 5.544 19 Si 0.817 3.183 20 H -0.192 1.192 21 H -0.199 1.199 22 H -0.188 1.188 23 C -0.070 4.070 24 C -0.066 4.066 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.096 0.904 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.103 0.897 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.057 0.943 37 H 0.103 0.897 38 H 0.050 0.950 39 H 0.095 0.905 40 H 0.051 0.949 41 H 0.100 0.900 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.051 0.949 48 H 0.107 0.893 49 H 0.108 0.892 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -23.911 0.707 21.248 31.996 hybrid contribution 1.669 0.992 0.549 2.017 sum -22.243 1.700 21.796 31.188 Atomic orbital electron populations 1.22268 0.95376 1.02403 1.02741 1.22199 0.94071 0.93921 0.88188 1.21842 1.01219 0.94710 1.02666 1.88021 1.86624 1.20556 1.35871 1.22577 0.99250 0.81812 0.97043 1.22159 0.89972 0.96979 0.98029 1.62096 1.02223 1.58337 1.04151 1.22084 0.95994 0.99063 0.89085 1.22192 0.91148 0.96307 0.97673 1.62147 1.01838 1.58049 1.04996 1.21968 0.90367 0.97082 0.96308 1.21136 0.93269 1.01012 0.96435 1.23152 1.00064 1.02135 0.98337 1.84634 1.23158 1.71643 1.17396 1.23051 1.03104 1.38251 1.04313 0.90942 1.26080 1.03142 0.95646 0.94154 1.70162 1.39433 1.39645 1.05124 0.85006 0.76769 0.78620 0.77943 1.19211 1.19858 1.18772 1.22178 0.97262 0.99185 0.88345 1.22174 0.90265 0.96328 0.97804 0.92753 0.92343 0.90414 0.91716 0.92851 0.89729 0.93046 0.93105 0.91762 0.91844 0.90276 0.94276 0.89727 0.94989 0.90456 0.94891 0.89964 0.91569 0.92053 0.92205 0.91773 0.91960 0.94886 0.89311 0.89186 0.94172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.83 9.53 71.98 0.69 -1.14 16 2 C 0.07 1.00 3.34 30.59 0.10 1.10 16 3 C -0.15 -1.96 9.56 71.98 0.69 -1.27 16 4 O -0.39 -7.21 9.94 -148.98 -1.48 -8.69 16 5 C 0.07 0.96 5.94 71.98 0.43 1.39 16 6 C 0.06 0.85 5.39 86.30 0.46 1.31 16 7 N -0.54 -10.49 4.59 -895.74 -4.11 -14.60 16 8 C 0.07 1.37 5.56 86.31 0.48 1.85 16 9 C 0.06 1.35 5.41 86.31 0.47 1.81 16 10 N -0.55 -13.57 4.71 -895.71 -4.22 -17.78 16 11 C 0.07 1.96 4.96 86.30 0.43 2.39 16 12 C -0.08 -2.67 5.15 30.60 0.16 -2.51 16 13 C -0.09 -3.61 5.67 71.98 0.41 -3.20 16 14 S -0.20 -10.73 21.44 -56.49 -1.21 -11.94 16 15 C -0.54 -31.74 9.50 67.95 0.65 -31.09 16 16 H 0.07 4.10 7.80 -2.91 -0.02 4.08 16 17 C 0.01 0.85 5.49 84.86 0.47 1.31 16 18 N -0.91 -55.49 13.22 21.65 0.29 -55.20 16 19 Si 0.99 44.48 29.55 68.60 2.03 46.50 16 20 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 21 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 22 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 23 C 0.06 1.20 5.61 86.31 0.48 1.69 16 24 C 0.06 1.11 5.43 86.31 0.47 1.58 16 25 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.06 0.57 7.87 -2.38 -0.02 0.56 16 27 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 28 H 0.06 0.73 7.79 -2.39 -0.02 0.72 16 29 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.05 0.65 6.68 -2.39 -0.02 0.63 16 33 H 0.06 0.66 7.87 -2.38 -0.02 0.64 16 34 H 0.06 0.80 8.00 -2.39 -0.02 0.78 16 35 H 0.08 1.23 7.84 -2.39 -0.02 1.21 16 36 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 37 H 0.08 1.64 8.00 -2.39 -0.02 1.62 16 38 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.08 2.01 6.34 -2.39 -0.02 1.99 16 40 H 0.03 0.90 8.12 -2.38 -0.02 0.88 16 41 H 0.08 2.09 8.03 -2.39 -0.02 2.07 16 42 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 43 H 0.06 2.10 6.49 -2.38 -0.02 2.09 16 44 H 0.06 2.44 8.14 -2.40 -0.02 2.42 16 45 H 0.06 2.59 8.14 -2.40 -0.02 2.57 16 46 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 47 H 0.03 0.74 8.14 -2.38 -0.02 0.72 16 48 H 0.09 1.62 8.07 -2.39 -0.02 1.60 16 49 H 0.09 1.32 6.71 -2.39 -0.02 1.31 16 50 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -68.71 402.93 -1.47 -70.18 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: 0.86 Total: 16.31 kcal Atomic # 6 Polarization: -31.17 SS G_CDS: 6.37 Total: -24.79 kcal Atomic # 7 Polarization: -79.54 SS G_CDS: -8.04 Total: -87.58 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: -1.48 Total: -8.69 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Atomic # 16 Polarization: -10.73 SS G_CDS: -1.21 Total: -11.94 kcal Total: -68.71 -1.47 -70.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174896592.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.228 kcal (2) G-P(sol) polarization free energy of solvation -68.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds