Wall clock time and date at job start Tue Mar 31 2020 12:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99935 * 2 1 4 4 H 1.48494 * 109.47190 * 269.99908 * 3 2 1 5 5 H 1.48497 * 109.46958 * 29.99970 * 3 2 1 6 6 H 1.48503 * 109.47202 * 149.99707 * 3 2 1 7 7 C 1.37872 * 120.00348 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99964 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00351 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.47383 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47260 * 180.02562 * 10 9 7 12 12 N 1.46897 * 109.46936 * 180.02562 * 11 10 9 13 13 C 1.46898 * 111.00094 * 180.02562 * 12 11 10 14 14 C 1.53120 * 109.52526 * 154.99996 * 13 12 11 15 15 C 1.53042 * 109.27882 * 177.55805 * 14 13 12 16 16 N 1.46846 * 109.52500 * 300.82356 * 15 14 13 17 17 C 1.46902 * 110.99854 * 185.83856 * 16 15 14 18 18 C 1.53007 * 109.46703 * 170.00080 * 17 16 15 19 19 C 1.50703 * 109.46640 * 180.02562 * 18 17 16 20 20 C 1.38234 * 120.00257 * 90.00059 * 19 18 17 21 21 C 1.38238 * 119.99675 * 180.27927 * 20 19 18 22 22 C 1.38228 * 120.00120 * 359.47825 * 21 20 19 23 23 C 1.38234 * 120.00000 * 0.52176 * 22 21 20 24 24 C 1.38234 * 119.99503 * 270.01660 * 19 18 17 25 25 C 1.46850 * 111.19704 * 61.73922 * 16 15 14 26 26 C 1.53029 * 109.52519 * 298.25533 * 25 16 15 27 27 H 0.97000 * 120.00235 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47223 * 60.00551 * 9 7 2 29 29 H 1.08997 * 109.47652 * 300.00060 * 9 7 2 30 30 H 1.09004 * 109.46783 * 60.00479 * 10 9 7 31 31 H 1.08997 * 109.47405 * 300.00437 * 10 9 7 32 32 H 1.09004 * 109.46843 * 60.00501 * 11 10 9 33 33 H 1.08997 * 109.47256 * 300.00513 * 11 10 9 34 34 H 1.00897 * 111.00152 * 303.95760 * 12 11 10 35 35 H 1.08999 * 109.52220 * 34.87411 * 13 12 11 36 36 H 1.08999 * 109.50222 * 57.61752 * 14 13 12 37 37 H 1.09001 * 109.50369 * 297.49849 * 14 13 12 38 38 H 1.09000 * 109.46339 * 180.80385 * 15 14 13 39 39 H 1.09007 * 109.45273 * 60.83314 * 15 14 13 40 40 H 1.08994 * 109.46975 * 50.00033 * 17 16 15 41 41 H 1.09000 * 109.47185 * 289.99309 * 17 16 15 42 42 H 1.08988 * 109.47457 * 59.99773 * 18 17 16 43 43 H 1.09000 * 109.46671 * 299.99544 * 18 17 16 44 44 H 1.08002 * 119.99744 * 359.97438 * 20 19 18 45 45 H 1.08004 * 119.99577 * 179.72816 * 21 20 19 46 46 H 1.07999 * 119.99932 * 180.24104 * 22 21 20 47 47 H 1.08001 * 120.00310 * 179.72161 * 23 22 21 48 48 H 1.07997 * 120.00460 * 0.02562 * 24 19 18 49 49 H 1.08995 * 109.46356 * 58.27820 * 25 16 15 50 50 H 1.08999 * 109.45663 * 178.24470 * 25 16 15 51 51 H 1.08998 * 109.50863 * 299.24033 * 26 25 16 52 52 H 1.09001 * 109.50832 * 179.12000 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6365 0.0014 11 6 5.5516 -2.6365 0.0014 12 7 6.0412 -4.0214 0.0022 13 6 7.5097 -4.0607 0.0028 14 6 7.9861 -5.3816 0.6135 15 6 9.5142 -5.4429 0.5558 16 7 9.9571 -5.3404 -0.8405 17 6 11.4093 -5.5343 -0.9477 18 6 11.7983 -5.6698 -2.4212 19 6 13.2880 -5.8693 -2.5311 20 6 13.8176 -7.1461 -2.5131 21 6 15.1846 -7.3287 -2.6081 22 6 16.0210 -6.2352 -2.7319 23 6 15.4914 -4.9584 -2.7499 24 6 14.1249 -4.7755 -2.6496 25 6 9.5519 -4.0596 -1.4335 26 6 8.0251 -3.9570 -1.4354 27 1 -0.4850 0.8400 -0.0004 28 1 3.8752 -0.6796 0.8895 29 1 3.8746 -0.6808 -0.8905 30 1 3.6580 -3.1513 -0.8880 31 1 3.6586 -3.1494 0.8920 32 1 5.9148 -2.1218 0.8910 33 1 5.9150 -2.1234 -0.8890 34 1 5.6657 -4.5373 0.7837 35 1 7.8960 -3.2276 0.5901 36 1 7.5669 -6.2151 0.0499 37 1 7.6583 -5.4418 1.6513 38 1 9.8559 -6.3884 0.9768 39 1 9.9326 -4.6169 1.1310 40 1 11.6956 -6.4391 -0.4116 41 1 11.9234 -4.6767 -0.5136 42 1 11.5120 -4.7651 -2.9573 43 1 11.2843 -6.5274 -2.8553 44 1 13.1638 -8.0006 -2.4199 45 1 15.5987 -8.3260 -2.5896 46 1 17.0887 -6.3781 -2.8100 47 1 16.1453 -4.1038 -2.8421 48 1 13.7112 -3.7780 -2.6630 49 1 9.9703 -3.2402 -0.8490 50 1 9.9211 -4.0006 -2.4574 51 1 7.6065 -4.7681 -2.0312 52 1 7.7251 -2.9996 -1.8613 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178643049.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:12 Heat of formation + Delta-G solvation = 4.551310 kcal Electronic energy + Delta-G solvation = -25200.186331 eV Core-core repulsion = 21777.015727 eV Total energy + Delta-G solvation = -3423.170604 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.91561 -39.22818 -36.62923 -34.52034 -33.30205 -31.98528 -31.27286 -31.05616 -30.40078 -28.19287 -26.30264 -24.15784 -23.45954 -22.94508 -22.39555 -21.55254 -20.95905 -20.23411 -19.59836 -17.22511 -16.69590 -16.39404 -15.90375 -15.53515 -15.40971 -15.09273 -14.81598 -14.71338 -14.18978 -14.00966 -13.83756 -13.78944 -13.43503 -13.40038 -13.07805 -12.92533 -12.57461 -12.38126 -12.09440 -11.94208 -11.76270 -11.57729 -11.39442 -11.34069 -11.23419 -11.08761 -10.96145 -10.79266 -10.57403 -10.40437 -9.90843 -9.69820 -9.52133 -9.30819 -9.14250 -9.08009 -8.58313 -8.51135 -8.20886 -6.01414 -3.98984 0.96164 1.01443 3.32099 3.35338 3.39121 3.42878 3.61249 4.24665 4.42200 4.47447 4.48083 4.58456 4.63507 4.71046 4.75846 4.82485 4.87011 5.02667 5.11526 5.14779 5.17545 5.22214 5.25874 5.32510 5.38267 5.44627 5.51178 5.55573 5.59677 5.60693 5.69039 5.72326 5.75376 5.81348 5.88201 5.96345 6.08264 6.09221 6.13308 6.20440 6.26881 6.34185 6.59215 6.62150 6.62841 6.82359 6.84788 6.95377 7.27633 7.38410 7.47466 7.62415 7.83370 8.58127 9.04298 9.61331 11.12189 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.028912 B = 0.001708 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.221605 B =16392.844796 C =17010.705989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.519 4.519 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.099 4.099 11 C 0.058 3.942 12 N -0.685 5.685 13 C 0.086 3.914 14 C -0.118 4.118 15 C 0.061 3.939 16 N -0.537 5.537 17 C 0.063 3.937 18 C -0.080 4.080 19 C -0.079 4.079 20 C -0.116 4.116 21 C -0.119 4.119 22 C -0.127 4.127 23 C -0.119 4.119 24 C -0.118 4.118 25 C 0.053 3.947 26 C -0.104 4.104 27 H 0.262 0.738 28 H 0.012 0.988 29 H 0.011 0.989 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.022 0.978 33 H 0.065 0.935 34 H 0.339 0.661 35 H 0.036 0.964 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.031 0.969 40 H 0.074 0.926 41 H 0.033 0.967 42 H 0.074 0.926 43 H 0.082 0.918 44 H 0.123 0.877 45 H 0.121 0.879 46 H 0.120 0.880 47 H 0.120 0.880 48 H 0.120 0.880 49 H 0.030 0.970 50 H 0.078 0.922 51 H 0.079 0.921 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.315 -14.199 -3.098 36.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.557 4.557 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.137 4.137 11 C -0.071 4.071 12 N -0.316 5.316 13 C -0.024 4.024 14 C -0.156 4.156 15 C -0.067 4.067 16 N -0.262 5.262 17 C -0.065 4.065 18 C -0.117 4.117 19 C -0.079 4.079 20 C -0.134 4.134 21 C -0.137 4.137 22 C -0.145 4.145 23 C -0.137 4.137 24 C -0.136 4.136 25 C -0.075 4.075 26 C -0.142 4.142 27 H 0.072 0.928 28 H 0.031 0.969 29 H 0.029 0.971 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.040 0.960 33 H 0.084 0.916 34 H 0.157 0.843 35 H 0.054 0.946 36 H 0.100 0.900 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.049 0.951 40 H 0.093 0.907 41 H 0.051 0.949 42 H 0.092 0.908 43 H 0.101 0.899 44 H 0.141 0.859 45 H 0.139 0.861 46 H 0.138 0.862 47 H 0.138 0.862 48 H 0.138 0.862 49 H 0.048 0.952 50 H 0.096 0.904 51 H 0.098 0.902 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 32.859 -14.513 -4.027 36.147 hybrid contribution 1.003 1.932 1.387 2.581 sum 33.862 -12.582 -2.640 36.220 Atomic orbital electron populations 1.69918 1.06283 1.26799 1.51390 1.25038 0.94728 0.99142 0.94664 0.86770 0.80299 0.83672 0.78474 1.20302 1.21434 1.19141 1.21163 0.89552 0.94464 1.50473 0.91009 1.19544 0.97142 0.92360 0.96041 1.21443 0.91154 0.99580 1.01564 1.22182 0.97548 0.87744 0.99624 1.60541 1.06185 1.15004 1.49889 1.21543 0.88606 0.96156 0.96126 1.21771 0.94545 0.98633 1.00657 1.22024 0.95746 1.00734 0.88235 1.61932 1.12715 1.33740 1.17768 1.22036 0.87472 1.00875 0.96081 1.20637 0.90703 1.03614 0.96754 1.19908 0.95638 0.93252 0.99133 1.21107 0.95240 0.96737 1.00298 1.21169 0.93673 0.98870 1.00021 1.21157 0.99770 0.92821 1.00754 1.21162 0.95241 0.97245 1.00068 1.21096 0.93492 0.98543 1.00435 1.22185 0.96577 0.89094 0.99642 1.21575 0.92972 1.02796 0.96897 0.92800 0.96933 0.97090 0.91929 0.93066 0.96007 0.91604 0.84285 0.94632 0.89999 0.91663 0.90671 0.95109 0.90718 0.94896 0.90762 0.89891 0.85938 0.86119 0.86243 0.86158 0.86192 0.95203 0.90396 0.90230 0.91539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.35 13.96 55.43 0.77 -27.57 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 22.09 27.47 -169.99 -4.67 17.42 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 7 C -0.52 -15.12 9.66 -34.44 -0.33 -15.46 16 8 H 0.07 2.25 7.99 -52.48 -0.42 1.83 16 9 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 10 C -0.10 -2.01 5.41 -26.73 -0.14 -2.15 16 11 C 0.06 0.95 5.49 -3.83 -0.02 0.93 16 12 N -0.69 -9.65 6.31 -106.59 -0.67 -10.33 16 13 C 0.09 1.02 2.56 -67.59 -0.17 0.85 16 14 C -0.12 -1.17 5.36 -26.65 -0.14 -1.31 16 15 C 0.06 0.54 5.46 -3.83 -0.02 0.52 16 16 N -0.54 -4.90 4.66 -234.67 -1.09 -5.99 16 17 C 0.06 0.49 4.94 -3.82 -0.02 0.47 16 18 C -0.08 -0.57 5.27 -27.88 -0.15 -0.72 16 19 C -0.08 -0.59 5.13 -104.62 -0.54 -1.13 16 20 C -0.12 -0.82 9.70 -39.58 -0.38 -1.21 16 21 C -0.12 -0.79 10.05 -39.58 -0.40 -1.19 16 22 C -0.13 -0.83 10.05 -39.59 -0.40 -1.23 16 23 C -0.12 -0.81 10.05 -39.58 -0.40 -1.21 16 24 C -0.12 -0.86 9.70 -39.58 -0.38 -1.25 16 25 C 0.05 0.51 5.29 -3.84 -0.02 0.49 16 26 C -0.10 -1.19 5.59 -26.65 -0.15 -1.33 16 27 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 28 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 29 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 30 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.02 0.36 8.06 -51.93 -0.42 -0.06 16 33 H 0.07 1.10 7.51 -51.93 -0.39 0.71 16 34 H 0.34 4.49 8.36 -39.29 -0.33 4.16 16 35 H 0.04 0.45 7.80 -51.93 -0.41 0.05 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.59 8.02 -51.93 -0.42 0.18 16 39 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.07 0.56 7.99 -51.93 -0.41 0.14 16 41 H 0.03 0.27 8.12 -51.93 -0.42 -0.15 16 42 H 0.07 0.54 6.37 -51.94 -0.33 0.20 16 43 H 0.08 0.62 8.08 -51.93 -0.42 0.20 16 44 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 45 H 0.12 0.57 8.06 -52.48 -0.42 0.15 16 46 H 0.12 0.55 8.06 -52.49 -0.42 0.13 16 47 H 0.12 0.61 8.06 -52.49 -0.42 0.18 16 48 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 49 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 50 H 0.08 0.68 6.21 -51.93 -0.32 0.35 16 51 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 52 H 0.07 0.80 7.54 -51.93 -0.39 0.41 16 LS Contribution 404.79 15.07 6.10 6.10 Total: -1.00 -31.34 404.79 -13.13 -44.46 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -9.69 Total: -0.58 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: -3.88 Total: -23.51 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: -0.99 Total: -43.89 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -31.34 -13.13 -44.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178643049.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.015 kcal (2) G-P(sol) polarization free energy of solvation -31.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds