Wall clock time and date at job start Tue Mar 31 2020 12:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99935 * 2 1 4 4 H 1.48494 * 109.47190 * 269.99908 * 3 2 1 5 5 H 1.48497 * 109.46958 * 29.99970 * 3 2 1 6 6 H 1.48503 * 109.47202 * 149.99707 * 3 2 1 7 7 C 1.37872 * 120.00348 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99964 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00351 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.47383 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47260 * 180.02562 * 10 9 7 12 12 N 1.46897 * 109.46936 * 180.02562 * 11 10 9 13 13 C 1.46898 * 111.00094 * 180.02562 * 12 11 10 14 14 C 1.53120 * 109.52526 * 154.99996 * 13 12 11 15 15 C 1.53042 * 109.27882 * 177.55805 * 14 13 12 16 16 N 1.46846 * 109.52500 * 300.82356 * 15 14 13 17 17 C 1.46902 * 110.99854 * 185.83856 * 16 15 14 18 18 C 1.53007 * 109.46703 * 170.00080 * 17 16 15 19 19 C 1.50703 * 109.46640 * 180.02562 * 18 17 16 20 20 C 1.38234 * 120.00257 * 90.00059 * 19 18 17 21 21 C 1.38238 * 119.99675 * 180.27927 * 20 19 18 22 22 C 1.38228 * 120.00120 * 359.47825 * 21 20 19 23 23 C 1.38234 * 120.00000 * 0.52176 * 22 21 20 24 24 C 1.38234 * 119.99503 * 270.01660 * 19 18 17 25 25 C 1.46850 * 111.19704 * 61.73922 * 16 15 14 26 26 C 1.53029 * 109.52519 * 298.25533 * 25 16 15 27 27 H 0.97000 * 120.00235 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47223 * 60.00551 * 9 7 2 29 29 H 1.08997 * 109.47652 * 300.00060 * 9 7 2 30 30 H 1.09004 * 109.46783 * 60.00479 * 10 9 7 31 31 H 1.08997 * 109.47405 * 300.00437 * 10 9 7 32 32 H 1.09004 * 109.46843 * 60.00501 * 11 10 9 33 33 H 1.08997 * 109.47256 * 300.00513 * 11 10 9 34 34 H 1.00897 * 111.00152 * 303.95760 * 12 11 10 35 35 H 1.08999 * 109.52220 * 34.87411 * 13 12 11 36 36 H 1.08999 * 109.50222 * 57.61752 * 14 13 12 37 37 H 1.09001 * 109.50369 * 297.49849 * 14 13 12 38 38 H 1.09000 * 109.46339 * 180.80385 * 15 14 13 39 39 H 1.09007 * 109.45273 * 60.83314 * 15 14 13 40 40 H 1.08994 * 109.46975 * 50.00033 * 17 16 15 41 41 H 1.09000 * 109.47185 * 289.99309 * 17 16 15 42 42 H 1.08988 * 109.47457 * 59.99773 * 18 17 16 43 43 H 1.09000 * 109.46671 * 299.99544 * 18 17 16 44 44 H 1.08002 * 119.99744 * 359.97438 * 20 19 18 45 45 H 1.08004 * 119.99577 * 179.72816 * 21 20 19 46 46 H 1.07999 * 119.99932 * 180.24104 * 22 21 20 47 47 H 1.08001 * 120.00310 * 179.72161 * 23 22 21 48 48 H 1.07997 * 120.00460 * 0.02562 * 24 19 18 49 49 H 1.08995 * 109.46356 * 58.27820 * 25 16 15 50 50 H 1.08999 * 109.45663 * 178.24470 * 25 16 15 51 51 H 1.08998 * 109.50863 * 299.24033 * 26 25 16 52 52 H 1.09001 * 109.50832 * 179.12000 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6365 0.0014 11 6 5.5516 -2.6365 0.0014 12 7 6.0412 -4.0214 0.0022 13 6 7.5097 -4.0607 0.0028 14 6 7.9861 -5.3816 0.6135 15 6 9.5142 -5.4429 0.5558 16 7 9.9571 -5.3404 -0.8405 17 6 11.4093 -5.5343 -0.9477 18 6 11.7983 -5.6698 -2.4212 19 6 13.2880 -5.8693 -2.5311 20 6 13.8176 -7.1461 -2.5131 21 6 15.1846 -7.3287 -2.6081 22 6 16.0210 -6.2352 -2.7319 23 6 15.4914 -4.9584 -2.7499 24 6 14.1249 -4.7755 -2.6496 25 6 9.5519 -4.0596 -1.4335 26 6 8.0251 -3.9570 -1.4354 27 1 -0.4850 0.8400 -0.0004 28 1 3.8752 -0.6796 0.8895 29 1 3.8746 -0.6808 -0.8905 30 1 3.6580 -3.1513 -0.8880 31 1 3.6586 -3.1494 0.8920 32 1 5.9148 -2.1218 0.8910 33 1 5.9150 -2.1234 -0.8890 34 1 5.6657 -4.5373 0.7837 35 1 7.8960 -3.2276 0.5901 36 1 7.5669 -6.2151 0.0499 37 1 7.6583 -5.4418 1.6513 38 1 9.8559 -6.3884 0.9768 39 1 9.9326 -4.6169 1.1310 40 1 11.6956 -6.4391 -0.4116 41 1 11.9234 -4.6767 -0.5136 42 1 11.5120 -4.7651 -2.9573 43 1 11.2843 -6.5274 -2.8553 44 1 13.1638 -8.0006 -2.4199 45 1 15.5987 -8.3260 -2.5896 46 1 17.0887 -6.3781 -2.8100 47 1 16.1453 -4.1038 -2.8421 48 1 13.7112 -3.7780 -2.6630 49 1 9.9703 -3.2402 -0.8490 50 1 9.9211 -4.0006 -2.4574 51 1 7.6065 -4.7681 -2.0312 52 1 7.7251 -2.9996 -1.8613 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178643049.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:11 Heat of formation + Delta-G solvation = -13.319895 kcal Electronic energy + Delta-G solvation = -25200.961285 eV Core-core repulsion = 21777.015727 eV Total energy + Delta-G solvation = -3423.945557 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.55067 -39.89872 -37.72019 -35.87529 -34.64362 -33.47490 -31.85482 -31.73775 -31.65059 -29.10733 -27.77458 -25.03544 -24.49398 -23.49807 -23.40937 -22.58996 -21.91238 -21.48523 -20.58070 -18.89740 -17.73318 -17.14817 -16.76450 -16.44939 -16.36726 -16.00716 -15.74100 -15.70568 -15.54093 -15.24978 -14.86803 -14.56817 -14.35327 -14.16201 -14.09822 -13.86653 -13.70574 -13.51250 -13.42139 -13.04903 -12.75853 -12.63292 -12.52445 -12.28031 -12.13059 -12.10907 -11.88913 -11.80443 -11.73981 -11.65940 -11.43622 -11.37036 -11.22122 -11.09895 -10.76751 -9.80167 -9.59321 -9.35005 -9.27433 -8.29632 -6.34019 0.46185 0.52078 1.35309 1.37147 1.49297 2.35971 2.79830 2.98570 3.05479 3.17149 3.76439 3.86477 3.94594 4.03162 4.13229 4.16918 4.20839 4.22670 4.27020 4.32472 4.35388 4.38946 4.49756 4.53725 4.60585 4.64616 4.66602 4.67945 4.70117 4.76544 4.87687 4.89559 4.96609 4.97898 5.02296 5.06820 5.13061 5.13978 5.21238 5.24920 5.27273 5.41681 5.52527 5.60213 5.61239 5.65422 5.66193 5.75567 6.10793 6.13670 6.16083 6.17146 6.29889 6.51528 6.74217 7.30590 8.87369 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.028912 B = 0.001708 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.221605 B =16392.844796 C =17010.705989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.002 3.998 3 Si 0.954 3.046 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.246 1.246 7 C -0.535 4.535 8 H 0.029 0.971 9 C -0.010 4.010 10 C -0.091 4.091 11 C 0.072 3.928 12 N -0.690 5.690 13 C 0.086 3.914 14 C -0.111 4.111 15 C 0.063 3.937 16 N -0.544 5.544 17 C 0.069 3.931 18 C -0.072 4.072 19 C -0.089 4.089 20 C -0.127 4.127 21 C -0.127 4.127 22 C -0.135 4.135 23 C -0.129 4.129 24 C -0.131 4.131 25 C 0.059 3.941 26 C -0.101 4.101 27 H 0.266 0.734 28 H 0.019 0.981 29 H 0.018 0.982 30 H 0.048 0.952 31 H 0.047 0.953 32 H 0.028 0.972 33 H 0.066 0.934 34 H 0.344 0.656 35 H 0.033 0.967 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.031 0.969 40 H 0.079 0.921 41 H 0.030 0.970 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.131 0.869 45 H 0.138 0.862 46 H 0.137 0.863 47 H 0.135 0.865 48 H 0.126 0.874 49 H 0.030 0.970 50 H 0.086 0.914 51 H 0.067 0.933 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 36.295 -13.835 -2.877 38.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.194 4.194 3 Si 0.777 3.223 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.170 1.170 7 C -0.573 4.573 8 H 0.048 0.952 9 C -0.048 4.048 10 C -0.129 4.129 11 C -0.057 4.057 12 N -0.322 5.322 13 C -0.023 4.023 14 C -0.149 4.149 15 C -0.066 4.066 16 N -0.269 5.269 17 C -0.059 4.059 18 C -0.109 4.109 19 C -0.090 4.090 20 C -0.145 4.145 21 C -0.145 4.145 22 C -0.153 4.153 23 C -0.147 4.147 24 C -0.149 4.149 25 C -0.069 4.069 26 C -0.140 4.140 27 H 0.075 0.925 28 H 0.037 0.963 29 H 0.036 0.964 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.046 0.954 33 H 0.085 0.915 34 H 0.163 0.837 35 H 0.051 0.949 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.107 0.893 39 H 0.049 0.951 40 H 0.097 0.903 41 H 0.049 0.951 42 H 0.091 0.909 43 H 0.098 0.902 44 H 0.149 0.851 45 H 0.156 0.844 46 H 0.155 0.845 47 H 0.153 0.847 48 H 0.144 0.856 49 H 0.048 0.952 50 H 0.104 0.896 51 H 0.086 0.914 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 35.859 -14.175 -3.804 38.747 hybrid contribution 0.028 1.709 1.305 2.150 sum 35.887 -12.467 -2.500 38.073 Atomic orbital electron populations 1.70076 1.08350 1.28177 1.52697 1.26063 0.95660 1.03659 0.94064 0.85605 0.79443 0.78012 0.79252 1.19098 1.20857 1.16995 1.21526 0.92284 0.93087 1.50397 0.95222 1.19490 0.93796 0.95100 0.96409 1.21268 0.93997 0.96850 1.00752 1.21895 0.94513 0.89325 0.99955 1.60485 1.07831 1.13498 1.50368 1.21602 0.86950 0.97229 0.96553 1.21711 0.95306 0.97015 1.00902 1.22031 0.94840 1.01494 0.88203 1.61936 1.13620 1.33362 1.17940 1.22004 0.86488 1.00917 0.96450 1.20546 0.90700 1.03363 0.96341 1.19983 0.95679 0.93601 0.99711 1.21309 0.95822 0.96948 1.00435 1.21452 0.93611 0.99870 0.99600 1.21460 1.00848 0.92727 1.00271 1.21427 0.95347 0.98071 0.99846 1.21279 0.93960 0.98881 1.00804 1.22104 0.95130 0.89404 1.00284 1.21526 0.94313 1.01800 0.96317 0.92492 0.96268 0.96355 0.93301 0.93435 0.95413 0.91507 0.83721 0.94857 0.90750 0.90658 0.89312 0.95065 0.90272 0.95134 0.90887 0.90216 0.85091 0.84443 0.84479 0.84712 0.85637 0.95219 0.89565 0.91446 0.92390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.96 13.96 21.44 0.30 -60.66 16 2 C 0.00 0.12 5.47 84.65 0.46 0.58 16 3 Si 0.95 44.97 27.47 68.60 1.88 46.85 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 6 H -0.25 -10.74 6.54 99.48 0.65 -10.09 16 7 C -0.53 -31.84 9.66 25.60 0.25 -31.60 16 8 H 0.03 1.94 7.99 -2.91 -0.02 1.92 16 9 C -0.01 -0.48 4.04 29.85 0.12 -0.36 16 10 C -0.09 -3.64 5.41 30.60 0.17 -3.47 16 11 C 0.07 2.29 5.49 86.30 0.47 2.76 16 12 N -0.69 -18.62 6.31 -491.16 -3.10 -21.72 16 13 C 0.09 1.92 2.56 45.00 0.12 2.03 16 14 C -0.11 -2.01 5.36 30.65 0.16 -1.84 16 15 C 0.06 0.99 5.46 86.33 0.47 1.46 16 16 N -0.54 -9.02 4.66 -896.35 -4.17 -13.20 16 17 C 0.07 0.96 4.94 86.31 0.43 1.39 16 18 C -0.07 -0.96 5.27 29.85 0.16 -0.80 16 19 C -0.09 -1.25 5.13 -19.87 -0.10 -1.35 16 20 C -0.13 -1.66 9.70 22.27 0.22 -1.44 16 21 C -0.13 -1.50 10.05 22.27 0.22 -1.27 16 22 C -0.14 -1.55 10.05 22.27 0.22 -1.33 16 23 C -0.13 -1.59 10.05 22.27 0.22 -1.37 16 24 C -0.13 -1.80 9.70 22.27 0.22 -1.58 16 25 C 0.06 1.04 5.29 86.32 0.46 1.50 16 26 C -0.10 -2.19 5.59 30.65 0.17 -2.02 16 27 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 28 H 0.02 0.89 7.20 -2.38 -0.02 0.87 16 29 H 0.02 0.85 7.57 -2.39 -0.02 0.83 16 30 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 31 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.03 0.85 8.06 -2.38 -0.02 0.83 16 33 H 0.07 2.11 7.51 -2.39 -0.02 2.10 16 34 H 0.34 8.68 8.36 -89.70 -0.75 7.93 16 35 H 0.03 0.78 7.80 -2.39 -0.02 0.76 16 36 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.09 1.18 8.02 -2.39 -0.02 1.16 16 39 H 0.03 0.50 8.14 -2.38 -0.02 0.48 16 40 H 0.08 1.04 7.99 -2.39 -0.02 1.03 16 41 H 0.03 0.45 8.12 -2.39 -0.02 0.43 16 42 H 0.07 0.97 6.37 -2.39 -0.02 0.96 16 43 H 0.08 1.11 8.08 -2.39 -0.02 1.09 16 44 H 0.13 1.38 8.06 -2.91 -0.02 1.35 16 45 H 0.14 1.05 8.06 -2.91 -0.02 1.02 16 46 H 0.14 0.99 8.06 -2.91 -0.02 0.97 16 47 H 0.13 1.15 8.06 -2.91 -0.02 1.13 16 48 H 0.13 1.47 8.06 -2.91 -0.02 1.44 16 49 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 50 H 0.09 1.37 6.21 -2.39 -0.01 1.36 16 51 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 52 H 0.06 1.34 7.54 -2.39 -0.02 1.32 16 Total: -1.00 -67.77 404.79 -0.61 -68.37 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: 0.05 Total: 19.06 kcal Atomic # 6 Polarization: -43.14 SS G_CDS: 4.43 Total: -38.70 kcal Atomic # 7 Polarization: -88.61 SS G_CDS: -6.98 Total: -95.58 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.88 Total: 46.85 kcal Total: -67.77 -0.61 -68.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178643049.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.052 kcal (2) G-P(sol) polarization free energy of solvation -67.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds