Wall clock time and date at job start Tue Mar 31 2020 10:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00210 * 2 1 4 4 H 1.48507 * 109.46978 * 270.00101 * 3 2 1 5 5 H 1.48499 * 109.47176 * 30.00062 * 3 2 1 6 6 H 1.48501 * 109.47090 * 150.00524 * 3 2 1 7 7 C 1.38815 * 119.99986 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00314 * 134.36325 * 7 2 1 9 9 N 1.36936 * 119.99917 * 314.36590 * 7 2 1 10 10 C 1.46498 * 120.00265 * 162.63370 * 9 7 2 11 11 C 1.50691 * 109.47458 * 285.60013 * 10 9 7 12 12 N 1.30528 * 126.34828 * 266.52533 * 11 10 9 13 13 N 1.28595 * 109.67367 * 179.97438 * 12 11 10 14 14 C 1.30513 * 109.67575 * 0.02562 * 13 12 11 15 15 C 1.50696 * 126.34654 * 180.02562 * 14 13 12 16 16 C 1.52997 * 117.50093 * 8.59024 * 15 14 13 17 17 C 1.52995 * 60.00193 * 252.51444 * 16 15 14 18 18 N 1.35493 * 126.35133 * 86.21008 * 11 10 9 19 19 C 1.46507 * 126.97652 * 0.04208 * 18 11 10 20 20 C 1.53002 * 117.49942 * 126.11739 * 19 18 11 21 21 C 1.52998 * 117.49657 * 57.49391 * 19 18 11 22 22 C 1.46499 * 119.99864 * 342.63815 * 9 7 2 23 23 C 1.55240 * 110.58131 * 227.88806 * 22 9 7 24 24 C 1.54892 * 102.58704 * 203.34181 * 23 22 9 25 25 C 1.54264 * 104.31778 * 37.92820 * 24 23 22 26 26 C 1.53877 * 106.59680 * 336.32647 * 25 24 23 27 27 H 0.97005 * 119.99886 * 359.97438 * 1 2 3 28 28 H 1.09008 * 109.46805 * 45.59768 * 10 9 7 29 29 H 1.09000 * 109.47290 * 165.59715 * 10 9 7 30 30 H 1.09001 * 115.55313 * 154.30196 * 15 14 13 31 31 H 1.09008 * 117.49603 * 0.02562 * 16 15 14 32 32 H 1.08998 * 117.50459 * 145.01887 * 16 15 14 33 33 H 1.09001 * 117.49504 * 252.51053 * 17 16 15 34 34 H 1.08997 * 117.52068 * 107.48430 * 17 16 15 35 35 H 1.09003 * 115.54880 * 271.82415 * 19 18 11 36 36 H 1.09005 * 117.49384 * 359.97438 * 20 19 18 37 37 H 1.08993 * 117.50076 * 145.02060 * 20 19 18 38 38 H 1.09001 * 117.49434 * 214.97906 * 21 19 18 39 39 H 1.08996 * 117.50183 * 0.02562 * 21 19 18 40 40 H 1.08996 * 110.43839 * 350.47183 * 22 9 7 41 41 H 1.08997 * 110.89798 * 85.04529 * 23 22 9 42 42 H 1.09004 * 110.76353 * 321.56740 * 23 22 9 43 43 H 1.09002 * 110.48333 * 279.18233 * 24 23 22 44 44 H 1.08996 * 110.48505 * 156.67674 * 24 23 22 45 45 H 1.08999 * 110.02685 * 95.60649 * 25 24 23 46 46 H 1.08991 * 110.03461 * 216.99169 * 25 24 23 47 47 H 1.09005 * 110.03060 * 119.28211 * 26 25 24 48 48 H 1.08994 * 110.03400 * 240.66272 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4400 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 2.8466 -1.3426 -0.6692 9 7 1.6344 -2.2101 0.8468 10 6 2.0899 -3.5808 0.6021 11 6 1.3266 -4.1641 -0.5589 12 7 0.2368 -4.8789 -0.4875 13 7 -0.1425 -5.2095 -1.6709 14 6 0.6884 -4.7212 -2.5511 15 6 0.6002 -4.8805 -4.0470 16 6 -0.6708 -5.5137 -4.6164 17 6 0.6399 -6.3027 -4.6096 18 7 1.6411 -4.0389 -1.8709 19 6 2.7821 -3.3162 -2.4385 20 6 3.7021 -4.0837 -3.3901 21 6 4.1811 -3.7326 -1.9800 22 6 0.7768 -1.9177 1.9980 23 6 1.3517 -2.5669 3.2856 24 6 0.0996 -2.6910 4.1890 25 6 -1.0360 -3.0720 3.2168 26 6 -0.6054 -2.5803 1.8237 27 1 -0.4850 0.8401 0.0004 28 1 3.1549 -3.5738 0.3700 29 1 1.9159 -4.1858 1.4920 30 1 1.0769 -4.0942 -4.6324 31 1 -1.4436 -5.8147 -3.9089 32 1 -1.0308 -5.1440 -5.5765 33 1 1.1424 -6.4521 -5.5653 34 1 0.7302 -7.1232 -3.8978 35 1 2.6137 -2.2590 -2.6442 36 1 3.4586 -5.1266 -3.5934 37 1 4.1391 -3.5317 -4.2221 38 1 4.9332 -2.9495 -1.8844 39 1 4.2526 -4.5446 -1.2564 40 1 0.6698 -0.8410 2.1291 41 1 2.0983 -1.9206 3.7469 42 1 1.7706 -3.5496 3.0690 43 1 -0.1167 -1.7391 4.6740 44 1 0.2427 -3.4737 4.9339 45 1 -1.1708 -4.1535 3.2058 46 1 -1.9632 -2.5834 3.5159 47 1 -0.5314 -3.4233 1.1367 48 1 -1.3239 -1.8531 1.4459 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181363120.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:01 Heat of formation + Delta-G solvation = 154.893705 kcal Electronic energy + Delta-G solvation = -28281.656859 eV Core-core repulsion = 24761.465247 eV Total energy + Delta-G solvation = -3520.191612 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.36713 -37.76114 -37.31495 -36.92281 -34.30364 -32.22523 -31.77977 -29.74908 -27.72379 -26.93384 -26.13777 -23.93130 -23.12366 -22.61612 -22.26373 -22.05556 -20.08257 -19.43286 -19.36395 -18.93860 -17.09683 -16.86604 -15.79400 -15.49582 -14.94025 -14.86586 -14.49186 -14.31694 -14.10177 -13.70335 -13.53406 -12.96699 -12.73063 -12.35444 -12.21488 -11.85467 -11.63963 -11.45724 -11.28889 -11.12688 -10.91601 -10.78119 -10.74425 -10.67032 -10.59508 -10.47829 -10.42453 -10.39638 -10.23058 -10.08636 -9.90453 -9.67189 -9.48552 -9.34927 -9.22259 -8.34596 -8.08063 -7.10276 -6.08787 -3.16000 2.47562 3.02886 3.28117 3.41968 3.45222 3.55326 3.63765 4.09515 4.42749 4.51059 4.75502 4.78751 4.90108 4.99055 5.03919 5.10177 5.21197 5.26720 5.45582 5.53592 5.54417 5.61648 5.66252 5.71467 5.80279 5.81180 5.90320 6.03253 6.08287 6.11401 6.23740 6.28471 6.31713 6.38747 6.49110 6.51106 6.57101 6.62482 6.69600 6.73477 6.77828 6.95006 7.08000 7.13982 7.54878 7.65425 7.66783 7.76296 8.14567 8.97654 9.57042 9.69626 10.22794 10.96448 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.011546 B = 0.005761 C = 0.004696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.591102 B = 4859.507788 C = 5961.540448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.032 3.968 3 Si 0.855 3.145 4 H -0.289 1.289 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.291 4.291 8 H 0.073 0.927 9 N -0.559 5.559 10 C 0.216 3.784 11 C 0.202 3.798 12 N -0.312 5.312 13 N -0.301 5.301 14 C 0.182 3.818 15 C -0.071 4.071 16 C -0.153 4.153 17 C -0.164 4.164 18 N -0.430 5.430 19 C 0.074 3.926 20 C -0.177 4.177 21 C -0.163 4.163 22 C 0.196 3.804 23 C -0.145 4.145 24 C -0.120 4.120 25 C -0.122 4.122 26 C -0.140 4.140 27 H 0.256 0.744 28 H 0.056 0.944 29 H 0.081 0.919 30 H 0.117 0.883 31 H 0.107 0.893 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.140 0.860 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.112 0.888 39 H 0.100 0.900 40 H 0.081 0.919 41 H 0.056 0.944 42 H 0.061 0.939 43 H 0.056 0.944 44 H 0.051 0.949 45 H 0.052 0.948 46 H 0.047 0.953 47 H 0.078 0.922 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.946 -7.960 -4.600 10.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.172 4.172 3 Si 0.682 3.318 4 H -0.216 1.216 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.419 4.419 8 H 0.091 0.909 9 N -0.276 5.276 10 C 0.085 3.915 11 C -0.068 4.068 12 N -0.152 5.152 13 N -0.141 5.141 14 C -0.085 4.085 15 C -0.092 4.092 16 C -0.191 4.191 17 C -0.202 4.202 18 N -0.120 5.120 19 C -0.031 4.031 20 C -0.215 4.215 21 C -0.200 4.200 22 C 0.089 3.911 23 C -0.184 4.184 24 C -0.158 4.158 25 C -0.161 4.161 26 C -0.180 4.180 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.100 0.900 30 H 0.135 0.865 31 H 0.126 0.874 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.158 0.842 36 H 0.118 0.882 37 H 0.126 0.874 38 H 0.130 0.870 39 H 0.118 0.882 40 H 0.100 0.900 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.066 0.934 47 H 0.096 0.904 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.616 -8.530 -3.979 10.484 hybrid contribution 1.164 1.953 -0.668 2.369 sum 5.780 -6.578 -4.647 9.913 Atomic orbital electron populations 1.70551 1.06033 1.26433 1.44680 1.24617 0.94074 0.98761 0.99769 0.87045 0.81315 0.85554 0.77872 1.21564 1.21484 1.20185 1.18867 1.10191 0.91454 1.21343 0.90900 1.44404 1.56742 1.00560 1.25925 1.19640 0.94787 0.87042 0.90014 1.26872 0.96921 0.97353 0.85680 1.74109 1.10243 1.16262 1.14623 1.74004 1.22487 1.22035 0.95554 1.23374 0.90432 0.99302 0.95349 1.19925 1.05012 0.97621 0.86626 1.22960 0.91502 1.02397 1.02246 1.23006 1.01436 0.93682 1.02117 1.45272 1.20960 1.38911 1.06845 1.21845 0.82102 0.96477 1.02714 1.23380 1.02300 1.01578 0.94248 1.23277 0.95700 1.03873 0.97184 1.21170 0.87774 0.98564 0.83564 1.23113 0.96685 1.00666 0.97902 1.22244 0.96183 1.00065 0.97316 1.22107 0.97265 0.99835 0.96845 1.22657 0.99169 1.01291 0.94883 0.93466 0.92563 0.90048 0.86498 0.87413 0.88386 0.88428 0.88557 0.84222 0.88206 0.87395 0.87006 0.88159 0.90045 0.92506 0.92010 0.92522 0.92978 0.92952 0.93412 0.90371 0.91957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.07 12.26 55.49 0.68 -22.39 16 2 C 0.03 0.82 4.09 -17.43 -0.07 0.75 16 3 Si 0.86 19.89 29.69 -169.99 -5.05 14.84 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.29 -7.16 9.10 -15.06 -0.14 -7.30 16 8 H 0.07 1.73 6.64 -52.49 -0.35 1.38 16 9 N -0.56 -12.71 2.56 -164.93 -0.42 -13.13 16 10 C 0.22 4.32 5.30 -5.20 -0.03 4.30 16 11 C 0.20 4.28 6.83 -154.99 -1.06 3.22 16 12 N -0.31 -7.21 10.69 32.79 0.35 -6.86 16 13 N -0.30 -6.62 11.83 32.79 0.39 -6.23 16 14 C 0.18 3.48 7.46 -154.99 -1.16 2.32 16 15 C -0.07 -1.03 5.51 -91.78 -0.51 -1.53 16 16 C -0.15 -1.96 10.15 -26.74 -0.27 -2.23 16 17 C -0.16 -1.91 10.23 -26.73 -0.27 -2.18 16 18 N -0.43 -8.18 3.03 -103.62 -0.31 -8.49 16 19 C 0.07 1.15 5.15 -67.93 -0.35 0.80 16 20 C -0.18 -2.01 9.81 -26.73 -0.26 -2.27 16 21 C -0.16 -2.04 9.17 -26.73 -0.25 -2.29 16 22 C 0.20 4.37 2.47 -66.08 -0.16 4.21 16 23 C -0.14 -2.66 6.37 -24.55 -0.16 -2.82 16 24 C -0.12 -2.01 6.82 -25.07 -0.17 -2.18 16 25 C -0.12 -2.27 6.80 -25.61 -0.17 -2.45 16 26 C -0.14 -3.17 6.36 -25.61 -0.16 -3.33 16 27 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 28 H 0.06 1.03 6.40 -51.92 -0.33 0.70 16 29 H 0.08 1.56 5.84 -51.93 -0.30 1.26 16 30 H 0.12 1.53 8.13 -51.93 -0.42 1.11 16 31 H 0.11 1.58 7.92 -51.92 -0.41 1.17 16 32 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.14 2.41 7.61 -51.93 -0.40 2.02 16 36 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.10 1.29 7.71 -51.93 -0.40 0.89 16 40 H 0.08 2.05 6.34 -51.93 -0.33 1.72 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.06 1.09 5.87 -51.93 -0.30 0.79 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.08 1.90 5.39 -51.93 -0.28 1.62 16 48 H 0.06 1.58 7.92 -51.93 -0.41 1.16 16 LS Contribution 376.66 15.07 5.68 5.68 Total: -1.00 -30.19 376.66 -11.60 -41.79 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -7.72 Total: 7.80 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -5.19 Total: -13.00 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: 0.68 Total: -57.10 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.05 Total: 14.84 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.19 -11.60 -41.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181363120.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.679 kcal (2) G-P(sol) polarization free energy of solvation -30.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 166.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds