Wall clock time and date at job start Tue Mar 31 2020 10:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00210 * 2 1 4 4 H 1.48507 * 109.46978 * 270.00101 * 3 2 1 5 5 H 1.48499 * 109.47176 * 30.00062 * 3 2 1 6 6 H 1.48501 * 109.47090 * 150.00524 * 3 2 1 7 7 C 1.38815 * 119.99986 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00314 * 134.36325 * 7 2 1 9 9 N 1.36936 * 119.99917 * 314.36590 * 7 2 1 10 10 C 1.46498 * 120.00265 * 162.63370 * 9 7 2 11 11 C 1.50691 * 109.47458 * 285.60013 * 10 9 7 12 12 N 1.30528 * 126.34828 * 266.52533 * 11 10 9 13 13 N 1.28595 * 109.67367 * 179.97438 * 12 11 10 14 14 C 1.30513 * 109.67575 * 0.02562 * 13 12 11 15 15 C 1.50696 * 126.34654 * 180.02562 * 14 13 12 16 16 C 1.52997 * 117.50093 * 8.59024 * 15 14 13 17 17 C 1.52995 * 60.00193 * 252.51444 * 16 15 14 18 18 N 1.35493 * 126.35133 * 86.21008 * 11 10 9 19 19 C 1.46507 * 126.97652 * 0.04208 * 18 11 10 20 20 C 1.53002 * 117.49942 * 126.11739 * 19 18 11 21 21 C 1.52998 * 117.49657 * 57.49391 * 19 18 11 22 22 C 1.46499 * 119.99864 * 342.63815 * 9 7 2 23 23 C 1.55240 * 110.58131 * 227.88806 * 22 9 7 24 24 C 1.54892 * 102.58704 * 203.34181 * 23 22 9 25 25 C 1.54264 * 104.31778 * 37.92820 * 24 23 22 26 26 C 1.53877 * 106.59680 * 336.32647 * 25 24 23 27 27 H 0.97005 * 119.99886 * 359.97438 * 1 2 3 28 28 H 1.09008 * 109.46805 * 45.59768 * 10 9 7 29 29 H 1.09000 * 109.47290 * 165.59715 * 10 9 7 30 30 H 1.09001 * 115.55313 * 154.30196 * 15 14 13 31 31 H 1.09008 * 117.49603 * 0.02562 * 16 15 14 32 32 H 1.08998 * 117.50459 * 145.01887 * 16 15 14 33 33 H 1.09001 * 117.49504 * 252.51053 * 17 16 15 34 34 H 1.08997 * 117.52068 * 107.48430 * 17 16 15 35 35 H 1.09003 * 115.54880 * 271.82415 * 19 18 11 36 36 H 1.09005 * 117.49384 * 359.97438 * 20 19 18 37 37 H 1.08993 * 117.50076 * 145.02060 * 20 19 18 38 38 H 1.09001 * 117.49434 * 214.97906 * 21 19 18 39 39 H 1.08996 * 117.50183 * 0.02562 * 21 19 18 40 40 H 1.08996 * 110.43839 * 350.47183 * 22 9 7 41 41 H 1.08997 * 110.89798 * 85.04529 * 23 22 9 42 42 H 1.09004 * 110.76353 * 321.56740 * 23 22 9 43 43 H 1.09002 * 110.48333 * 279.18233 * 24 23 22 44 44 H 1.08996 * 110.48505 * 156.67674 * 24 23 22 45 45 H 1.08999 * 110.02685 * 95.60649 * 25 24 23 46 46 H 1.08991 * 110.03461 * 216.99169 * 25 24 23 47 47 H 1.09005 * 110.03060 * 119.28211 * 26 25 24 48 48 H 1.08994 * 110.03400 * 240.66272 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4400 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 2.8466 -1.3426 -0.6692 9 7 1.6344 -2.2101 0.8468 10 6 2.0899 -3.5808 0.6021 11 6 1.3266 -4.1641 -0.5589 12 7 0.2368 -4.8789 -0.4875 13 7 -0.1425 -5.2095 -1.6709 14 6 0.6884 -4.7212 -2.5511 15 6 0.6002 -4.8805 -4.0470 16 6 -0.6708 -5.5137 -4.6164 17 6 0.6399 -6.3027 -4.6096 18 7 1.6411 -4.0389 -1.8709 19 6 2.7821 -3.3162 -2.4385 20 6 3.7021 -4.0837 -3.3901 21 6 4.1811 -3.7326 -1.9800 22 6 0.7768 -1.9177 1.9980 23 6 1.3517 -2.5669 3.2856 24 6 0.0996 -2.6910 4.1890 25 6 -1.0360 -3.0720 3.2168 26 6 -0.6054 -2.5803 1.8237 27 1 -0.4850 0.8401 0.0004 28 1 3.1549 -3.5738 0.3700 29 1 1.9159 -4.1858 1.4920 30 1 1.0769 -4.0942 -4.6324 31 1 -1.4436 -5.8147 -3.9089 32 1 -1.0308 -5.1440 -5.5765 33 1 1.1424 -6.4521 -5.5653 34 1 0.7302 -7.1232 -3.8978 35 1 2.6137 -2.2590 -2.6442 36 1 3.4586 -5.1266 -3.5934 37 1 4.1391 -3.5317 -4.2221 38 1 4.9332 -2.9495 -1.8844 39 1 4.2526 -4.5446 -1.2564 40 1 0.6698 -0.8410 2.1291 41 1 2.0983 -1.9206 3.7469 42 1 1.7706 -3.5496 3.0690 43 1 -0.1167 -1.7391 4.6740 44 1 0.2427 -3.4737 4.9339 45 1 -1.1708 -4.1535 3.2058 46 1 -1.9632 -2.5834 3.5159 47 1 -0.5314 -3.4233 1.1367 48 1 -1.3239 -1.8531 1.4459 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181363120.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:59 Heat of formation + Delta-G solvation = 140.871206 kcal Electronic energy + Delta-G solvation = -28282.264920 eV Core-core repulsion = 24761.465247 eV Total energy + Delta-G solvation = -3520.799673 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.88722 -39.41436 -38.48083 -38.01572 -35.98588 -33.84991 -33.39599 -31.38056 -29.32924 -28.55843 -27.86691 -25.28459 -24.60457 -24.05579 -23.29916 -23.11552 -21.56801 -20.89964 -20.75938 -20.67419 -18.70158 -18.34843 -17.11086 -16.74336 -16.64324 -16.46454 -16.07315 -15.69357 -15.49541 -15.21603 -15.06896 -14.35405 -14.20030 -13.95745 -13.72063 -13.43998 -12.92914 -12.79839 -12.62669 -12.50112 -12.46590 -12.37022 -12.19715 -12.08394 -12.06494 -11.90080 -11.84090 -11.74631 -11.68452 -11.61601 -11.44368 -11.18977 -11.06558 -10.86353 -10.73805 -10.28522 -9.65074 -8.97276 -8.02752 -5.10926 1.00953 1.39884 1.51104 1.58510 1.69853 1.98770 2.52430 2.58279 2.97920 3.06885 3.34104 3.54292 3.62803 3.72984 3.81186 3.87536 4.01958 4.03952 4.05628 4.11932 4.19238 4.24839 4.29218 4.64505 4.66785 4.76820 4.77180 4.83342 4.83978 4.87579 4.92705 4.95710 4.97458 4.97952 5.00818 5.12596 5.18162 5.20016 5.24281 5.25214 5.28694 5.38262 5.44477 5.57049 5.68589 5.82199 5.85566 6.21041 6.26458 7.06514 7.83266 7.98644 8.33848 9.02174 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.011546 B = 0.005761 C = 0.004696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.591102 B = 4859.507788 C = 5961.540448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C -0.017 4.017 3 Si 0.916 3.084 4 H -0.289 1.289 5 H -0.303 1.303 6 H -0.268 1.268 7 C -0.277 4.277 8 H 0.082 0.918 9 N -0.569 5.569 10 C 0.220 3.780 11 C 0.186 3.814 12 N -0.346 5.346 13 N -0.343 5.343 14 C 0.189 3.811 15 C -0.095 4.095 16 C -0.155 4.155 17 C -0.132 4.132 18 N -0.430 5.430 19 C 0.030 3.970 20 C -0.138 4.138 21 C -0.154 4.154 22 C 0.194 3.806 23 C -0.134 4.134 24 C -0.110 4.110 25 C -0.117 4.117 26 C -0.136 4.136 27 H 0.246 0.754 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.135 0.865 31 H 0.081 0.919 32 H 0.127 0.873 33 H 0.138 0.862 34 H 0.083 0.917 35 H 0.118 0.882 36 H 0.104 0.896 37 H 0.139 0.861 38 H 0.128 0.872 39 H 0.097 0.903 40 H 0.047 0.953 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.062 0.938 44 H 0.084 0.916 45 H 0.060 0.940 46 H 0.053 0.947 47 H 0.057 0.943 48 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.626 -9.159 -5.508 13.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.218 4.218 3 Si 0.744 3.256 4 H -0.216 1.216 5 H -0.230 1.230 6 H -0.193 1.193 7 C -0.406 4.406 8 H 0.100 0.900 9 N -0.287 5.287 10 C 0.090 3.910 11 C -0.085 4.085 12 N -0.186 5.186 13 N -0.183 5.183 14 C -0.079 4.079 15 C -0.116 4.116 16 C -0.193 4.193 17 C -0.170 4.170 18 N -0.119 5.119 19 C -0.073 4.073 20 C -0.175 4.175 21 C -0.191 4.191 22 C 0.087 3.913 23 C -0.173 4.173 24 C -0.148 4.148 25 C -0.155 4.155 26 C -0.176 4.176 27 H 0.055 0.945 28 H 0.095 0.905 29 H 0.107 0.893 30 H 0.152 0.848 31 H 0.099 0.901 32 H 0.145 0.855 33 H 0.156 0.844 34 H 0.102 0.898 35 H 0.135 0.865 36 H 0.123 0.877 37 H 0.157 0.843 38 H 0.146 0.854 39 H 0.116 0.884 40 H 0.065 0.935 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.081 0.919 44 H 0.103 0.897 45 H 0.078 0.922 46 H 0.072 0.928 47 H 0.076 0.924 48 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 7.338 -9.743 -4.886 13.139 hybrid contribution 0.318 2.228 -0.493 2.304 sum 7.656 -7.514 -5.379 12.000 Atomic orbital electron populations 1.70663 1.07394 1.26102 1.48365 1.25180 0.94407 1.01094 1.01075 0.86100 0.79927 0.82174 0.77446 1.21602 1.22984 1.19324 1.19218 1.09328 0.91718 1.20323 0.90037 1.44586 1.56730 1.01538 1.25882 1.19729 0.95389 0.85680 0.90172 1.26834 0.96773 0.97834 0.87087 1.73988 1.11286 1.17569 1.15766 1.73912 1.24205 1.24276 0.95893 1.24230 0.89117 0.97374 0.97132 1.20214 1.07182 1.00293 0.83906 1.23030 0.91025 1.02610 1.02658 1.23080 0.99935 0.91050 1.02928 1.45422 1.21761 1.38553 1.06121 1.21988 0.82426 0.95969 1.06959 1.23494 0.98308 1.01411 0.94268 1.23390 0.93490 1.03996 0.98270 1.21119 0.87942 0.96848 0.85431 1.23002 0.97569 1.00848 0.95843 1.22223 0.94027 1.01542 0.97033 1.22052 0.98440 1.00206 0.94834 1.22531 0.98833 0.99346 0.96849 0.94451 0.90453 0.89347 0.84751 0.90085 0.85515 0.84434 0.89848 0.86452 0.87728 0.84335 0.85370 0.88429 0.93501 0.91441 0.90981 0.91881 0.89739 0.92152 0.92789 0.92394 0.96227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -51.23 12.26 21.65 0.27 -50.97 16 2 C -0.02 -0.92 4.09 84.86 0.35 -0.58 16 3 Si 0.92 42.10 29.69 68.60 2.04 44.14 16 4 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 5 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 7 C -0.28 -13.81 9.10 84.03 0.77 -13.05 16 8 H 0.08 3.85 6.64 -2.91 -0.02 3.83 16 9 N -0.57 -26.26 2.56 -675.71 -1.73 -27.99 16 10 C 0.22 8.79 5.30 85.63 0.45 9.25 16 11 C 0.19 8.03 6.83 137.97 0.94 8.98 16 12 N -0.35 -16.60 10.69 -50.16 -0.54 -17.13 16 13 N -0.34 -15.66 11.83 -50.16 -0.59 -16.25 16 14 C 0.19 7.28 7.46 137.98 1.03 8.31 16 15 C -0.10 -2.61 5.51 -11.54 -0.06 -2.68 16 16 C -0.16 -3.76 10.15 30.59 0.31 -3.45 16 17 C -0.13 -2.69 10.23 30.59 0.31 -2.38 16 18 N -0.43 -16.38 3.03 -481.74 -1.46 -17.84 16 19 C 0.03 0.91 5.15 44.99 0.23 1.15 16 20 C -0.14 -2.64 9.81 30.60 0.30 -2.34 16 21 C -0.15 -3.46 9.17 30.60 0.28 -3.18 16 22 C 0.19 8.82 2.47 46.19 0.11 8.94 16 23 C -0.13 -4.75 6.37 32.01 0.20 -4.55 16 24 C -0.11 -3.48 6.82 31.67 0.22 -3.27 16 25 C -0.12 -4.34 6.80 31.32 0.21 -4.13 16 26 C -0.14 -6.41 6.36 31.32 0.20 -6.21 16 27 H 0.25 14.06 8.31 -92.70 -0.77 13.29 16 28 H 0.08 2.73 6.40 -2.38 -0.02 2.72 16 29 H 0.09 3.35 5.84 -2.39 -0.01 3.34 16 30 H 0.13 3.19 8.13 -2.39 -0.02 3.17 16 31 H 0.08 2.42 7.92 -2.38 -0.02 2.40 16 32 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.14 1.76 8.14 -2.39 -0.02 1.75 16 34 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.12 4.04 7.61 -2.39 -0.02 4.02 16 36 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 37 H 0.14 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.10 2.27 7.71 -2.39 -0.02 2.25 16 40 H 0.05 2.46 6.34 -2.39 -0.02 2.44 16 41 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.07 2.41 5.87 -2.39 -0.01 2.40 16 43 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 46 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.06 2.96 5.39 -2.38 -0.01 2.95 16 48 H 0.02 1.04 7.92 -2.39 -0.02 1.02 16 Total: -1.00 -71.03 376.66 4.79 -66.24 By element: Atomic # 1 Polarization: 28.05 SS G_CDS: 0.95 Total: 29.00 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: 5.86 Total: -9.19 kcal Atomic # 7 Polarization: -126.13 SS G_CDS: -4.05 Total: -130.18 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.04 Total: 44.14 kcal Total: -71.03 4.79 -66.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181363120.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.107 kcal (2) G-P(sol) polarization free energy of solvation -71.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds