Wall clock time and date at job start Tue Mar 31 2020 10:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99781 * 2 1 4 4 H 1.48501 * 109.46957 * 270.00052 * 3 2 1 5 5 H 1.48498 * 109.47177 * 30.00128 * 3 2 1 6 6 H 1.48500 * 109.47349 * 150.00112 * 3 2 1 7 7 C 1.37875 * 120.00357 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99783 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00398 * 179.97438 * 7 2 1 10 10 N 1.46897 * 109.47211 * 183.23342 * 9 7 2 11 11 C 1.46897 * 110.99702 * 191.76886 * 10 9 7 12 12 C 1.50700 * 109.47183 * 173.02968 * 11 10 9 13 13 N 1.30523 * 126.34598 * 95.14024 * 12 11 10 14 14 N 1.28594 * 109.67567 * 180.30193 * 13 12 11 15 15 C 1.30523 * 109.66985 * 359.73041 * 14 13 12 16 16 C 1.50700 * 126.34623 * 179.97438 * 15 14 13 17 17 C 1.53002 * 117.49816 * 8.66335 * 16 15 14 18 18 C 1.53001 * 117.49872 * 300.04149 * 16 15 14 19 19 N 1.35487 * 126.34999 * 274.98914 * 12 11 10 20 20 C 1.46508 * 126.98073 * 359.96614 * 19 12 11 21 21 C 1.52995 * 117.49873 * 133.22160 * 20 19 12 22 22 C 1.53002 * 60.00367 * 252.51566 * 21 20 19 23 23 C 1.46903 * 110.99739 * 67.81908 * 10 9 7 24 24 C 1.53006 * 109.47031 * 57.80855 * 23 10 9 25 25 C 1.53004 * 117.49282 * 242.91619 * 24 23 10 26 26 C 1.52998 * 117.49913 * 174.25912 * 24 23 10 27 27 H 0.96996 * 120.00608 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.46915 * 63.23229 * 9 7 2 29 29 H 1.09000 * 109.46617 * 303.23625 * 9 7 2 30 30 H 1.08999 * 109.46870 * 53.03718 * 11 10 9 31 31 H 1.08997 * 109.47494 * 293.03298 * 11 10 9 32 32 H 1.09002 * 115.55024 * 154.37103 * 16 15 14 33 33 H 1.08994 * 117.49889 * 0.02562 * 17 16 15 34 34 H 1.09000 * 117.49728 * 145.02044 * 17 16 15 35 35 H 1.08999 * 117.49859 * 214.97582 * 18 16 15 36 36 H 1.08998 * 117.50037 * 359.97438 * 18 16 15 37 37 H 1.08991 * 115.56384 * 278.91725 * 20 19 12 38 38 H 1.09002 * 117.50164 * 0.02562 * 21 20 19 39 39 H 1.09006 * 117.50185 * 145.02220 * 21 20 19 40 40 H 1.08997 * 117.49697 * 252.51507 * 22 21 20 41 41 H 1.08997 * 117.49543 * 107.48670 * 22 21 20 42 42 H 1.08997 * 109.46974 * 177.80271 * 23 10 9 43 43 H 1.08999 * 109.47326 * 297.80316 * 23 10 9 44 44 H 1.08996 * 115.54886 * 28.58487 * 24 23 10 45 45 H 1.08993 * 117.49991 * 359.97438 * 25 24 23 46 46 H 1.09001 * 117.49572 * 145.02279 * 25 24 23 47 47 H 1.08994 * 117.50226 * 214.97503 * 26 24 23 48 48 H 1.09006 * 117.49704 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5116 -1.1940 0.0000 10 7 4.0012 -2.5768 -0.0774 11 6 5.4426 -2.6410 0.1986 12 6 5.8748 -4.0824 0.2796 13 7 6.3821 -4.7936 -0.6902 14 7 6.6294 -5.9838 -0.2708 15 6 6.2964 -6.0844 0.9872 16 6 6.4266 -7.3130 1.8501 17 6 7.1862 -8.5072 1.2688 18 6 5.6643 -8.5661 1.4147 19 7 5.8115 -4.8796 1.3733 20 6 5.3139 -4.5147 2.7021 21 6 4.3478 -5.4845 3.3855 22 6 3.8316 -4.1566 2.8276 23 6 3.6880 -3.1739 -1.3826 24 6 4.3076 -2.3242 -2.4940 25 6 3.3547 -1.6600 -3.4899 26 6 4.2086 -2.8532 -3.9262 27 1 -0.4851 0.8400 -0.0004 28 1 3.8752 -0.7306 0.9170 29 1 3.8745 -0.6313 -0.8602 30 1 5.6536 -2.1448 1.1458 31 1 5.9885 -2.1425 -0.6023 32 1 6.5217 -7.1281 2.9201 33 1 7.5921 -8.4041 0.2626 34 1 7.7813 -9.1081 1.9565 35 1 5.2582 -9.2058 2.1983 36 1 5.0683 -8.5017 0.5044 37 1 6.0174 -3.9749 3.3359 38 1 4.0827 -6.3942 2.8467 39 1 4.4158 -5.5828 4.4690 40 1 3.5601 -3.3813 3.5440 41 1 3.2268 -4.1926 1.9215 42 1 4.0956 -4.1838 -1.4273 43 1 2.6067 -3.2123 -1.5145 44 1 5.2105 -1.7782 -2.2204 45 1 2.2866 -1.8287 -3.3536 46 1 3.6309 -0.6772 -3.8719 47 1 5.0461 -2.6549 -4.5950 48 1 3.7024 -3.8068 -4.0766 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181409288.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:31 Heat of formation + Delta-G solvation = 172.436911 kcal Electronic energy + Delta-G solvation = -27591.820480 eV Core-core repulsion = 24072.389599 eV Total energy + Delta-G solvation = -3519.430881 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.96798 -38.18346 -37.58059 -37.19716 -35.20770 -32.76000 -32.48641 -30.73975 -28.01934 -27.05545 -24.69788 -23.88796 -23.24631 -22.58911 -22.21472 -21.79817 -21.42167 -20.40445 -19.84984 -18.94845 -17.44028 -16.80496 -16.15094 -15.94120 -15.53586 -15.10021 -14.77130 -14.40965 -14.21854 -14.16098 -13.77368 -13.26592 -12.95620 -12.64139 -12.39063 -12.05484 -11.73679 -11.66829 -11.57436 -11.41534 -11.27283 -11.14266 -11.09912 -10.99922 -10.93487 -10.83015 -10.69682 -10.68239 -10.40758 -9.97729 -9.94151 -9.82239 -9.77241 -9.31773 -9.22375 -8.68225 -8.59107 -7.48882 -6.07842 -4.04501 1.91095 2.51552 2.99897 3.25469 3.33215 3.34423 3.43196 3.76677 4.15368 4.38267 4.39162 4.43176 4.60199 4.64370 4.66588 4.75759 4.86140 4.88508 4.94061 5.24054 5.25606 5.29409 5.44833 5.46225 5.51887 5.54811 5.59177 5.63915 5.75367 5.80589 5.98790 5.99968 6.02849 6.05367 6.13158 6.16638 6.28392 6.30228 6.35984 6.44377 6.50609 6.70612 6.77570 6.91700 6.97295 7.08493 7.53197 7.78515 7.91607 8.60355 8.99612 9.00393 9.54234 11.05215 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.015320 B = 0.004338 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.283775 B = 6453.637799 C = 7521.955142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.072 3.928 3 Si 0.870 3.130 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.269 1.269 7 C -0.499 4.499 8 H 0.079 0.921 9 C 0.163 3.837 10 N -0.514 5.514 11 C 0.131 3.869 12 C 0.207 3.793 13 N -0.293 5.293 14 N -0.298 5.298 15 C 0.197 3.803 16 C -0.080 4.080 17 C -0.152 4.152 18 C -0.160 4.160 19 N -0.432 5.432 20 C 0.040 3.960 21 C -0.174 4.174 22 C -0.140 4.140 23 C 0.095 3.905 24 C -0.167 4.167 25 C -0.167 4.167 26 C -0.182 4.182 27 H 0.263 0.737 28 H 0.024 0.976 29 H -0.003 1.003 30 H 0.085 0.915 31 H 0.063 0.937 32 H 0.121 0.879 33 H 0.108 0.892 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.132 0.868 38 H 0.102 0.898 39 H 0.108 0.892 40 H 0.112 0.888 41 H 0.125 0.875 42 H 0.062 0.938 43 H 0.085 0.915 44 H 0.093 0.907 45 H 0.099 0.901 46 H 0.082 0.918 47 H 0.083 0.917 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.723 -11.900 6.163 17.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.129 4.129 3 Si 0.698 3.302 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.193 1.193 7 C -0.538 4.538 8 H 0.097 0.903 9 C 0.037 3.963 10 N -0.237 5.237 11 C 0.000 4.000 12 C -0.061 4.061 13 N -0.133 5.133 14 N -0.138 5.138 15 C -0.069 4.069 16 C -0.100 4.100 17 C -0.190 4.190 18 C -0.198 4.198 19 N -0.121 5.121 20 C -0.065 4.065 21 C -0.211 4.211 22 C -0.177 4.177 23 C -0.033 4.033 24 C -0.187 4.187 25 C -0.204 4.204 26 C -0.220 4.220 27 H 0.073 0.927 28 H 0.042 0.958 29 H 0.015 0.985 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.139 0.861 33 H 0.127 0.873 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.150 0.850 38 H 0.121 0.879 39 H 0.127 0.873 40 H 0.130 0.870 41 H 0.143 0.857 42 H 0.080 0.920 43 H 0.104 0.896 44 H 0.111 0.889 45 H 0.118 0.882 46 H 0.101 0.899 47 H 0.102 0.898 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 11.838 -12.376 5.180 17.892 hybrid contribution 0.415 2.011 0.663 2.157 sum 12.253 -10.365 5.842 17.079 Atomic orbital electron populations 1.69877 1.06076 1.26743 1.51222 1.24822 0.94604 0.98560 0.94959 0.86945 0.80284 0.84431 0.78552 1.20291 1.21365 1.19339 1.20872 0.88326 0.94497 1.50065 0.90314 1.20204 0.97313 0.83338 0.95414 1.62298 1.08850 1.22804 1.29764 1.20436 0.92150 0.85245 1.02160 1.24739 1.01291 0.97081 0.82952 1.74303 1.16914 0.98352 1.23744 1.74147 1.20493 1.12343 1.06809 1.23545 1.02015 0.87698 0.93673 1.20027 1.08712 0.84356 0.96952 1.23002 0.94441 0.98156 1.03405 1.23055 0.95221 0.97910 1.03621 1.45322 1.46319 1.09930 1.10529 1.21950 0.94469 1.06927 0.83110 1.23384 1.01360 0.95683 1.00681 1.23477 0.92439 0.97166 1.04653 1.21712 1.00914 0.95700 0.84957 1.22804 1.00845 1.03392 0.91652 1.22942 0.98128 0.95982 1.03332 1.22839 1.02721 0.98476 0.97938 0.92723 0.95807 0.98491 0.89655 0.91886 0.86097 0.87331 0.88136 0.87993 0.88232 0.85032 0.87929 0.87343 0.86960 0.85712 0.91972 0.89624 0.88902 0.88221 0.89936 0.89814 0.89399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.42 13.96 55.43 0.77 -25.65 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.87 20.65 27.41 -169.99 -4.66 16.00 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.08 6.64 56.52 0.38 -5.70 16 7 C -0.50 -13.08 9.06 -34.44 -0.31 -13.39 16 8 H 0.08 2.28 7.59 -52.48 -0.40 1.88 16 9 C 0.16 3.60 3.60 -4.98 -0.02 3.59 16 10 N -0.51 -9.83 4.43 -237.52 -1.05 -10.88 16 11 C 0.13 2.20 5.11 -4.98 -0.03 2.17 16 12 C 0.21 3.49 6.41 -154.99 -0.99 2.50 16 13 N -0.29 -5.47 11.58 32.79 0.38 -5.09 16 14 N -0.30 -5.23 11.83 32.80 0.39 -4.85 16 15 C 0.20 2.89 7.44 -154.98 -1.15 1.73 16 16 C -0.08 -0.84 4.83 -91.77 -0.44 -1.28 16 17 C -0.15 -1.39 10.15 -26.73 -0.27 -1.66 16 18 C -0.16 -1.46 10.23 -26.73 -0.27 -1.73 16 19 N -0.43 -6.30 3.04 -103.61 -0.31 -6.61 16 20 C 0.04 0.46 6.18 -67.92 -0.42 0.04 16 21 C -0.17 -1.66 9.25 -26.73 -0.25 -1.91 16 22 C -0.14 -1.74 10.45 -26.73 -0.28 -2.02 16 23 C 0.10 1.85 5.25 -3.82 -0.02 1.83 16 24 C -0.17 -3.05 3.99 -90.62 -0.36 -3.41 16 25 C -0.17 -3.01 10.18 -26.69 -0.27 -3.28 16 26 C -0.18 -2.97 10.25 -26.69 -0.27 -3.24 16 27 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 28 H 0.02 0.53 7.22 -51.93 -0.37 0.16 16 29 H 0.00 -0.06 5.91 -51.93 -0.31 -0.37 16 30 H 0.09 1.31 7.89 -51.93 -0.41 0.91 16 31 H 0.06 1.07 6.25 -51.93 -0.32 0.74 16 32 H 0.12 1.04 7.73 -51.93 -0.40 0.63 16 33 H 0.11 1.18 7.92 -51.93 -0.41 0.76 16 34 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.13 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.10 1.05 7.53 -51.93 -0.39 0.66 16 39 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.12 2.01 7.86 -51.93 -0.41 1.60 16 42 H 0.06 1.23 6.51 -51.93 -0.34 0.89 16 43 H 0.09 1.85 6.84 -51.93 -0.36 1.49 16 44 H 0.09 1.70 6.24 -51.93 -0.32 1.38 16 45 H 0.10 1.94 8.03 -51.93 -0.42 1.53 16 46 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 47 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 48 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 LS Contribution 386.02 15.07 5.82 5.82 Total: -1.00 -30.53 386.02 -11.95 -42.48 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -7.83 Total: 6.97 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: -5.46 Total: -18.20 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: 0.18 Total: -53.07 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.66 Total: 16.00 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.53 -11.95 -42.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181409288.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 214.921 kcal (2) G-P(sol) polarization free energy of solvation -30.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 184.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 172.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds