Wall clock time and date at job start Tue Mar 31 2020 10:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99781 * 2 1 4 4 H 1.48501 * 109.46957 * 270.00052 * 3 2 1 5 5 H 1.48498 * 109.47177 * 30.00128 * 3 2 1 6 6 H 1.48500 * 109.47349 * 150.00112 * 3 2 1 7 7 C 1.37875 * 120.00357 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99783 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00398 * 179.97438 * 7 2 1 10 10 N 1.46897 * 109.47211 * 183.23342 * 9 7 2 11 11 C 1.46897 * 110.99702 * 191.76886 * 10 9 7 12 12 C 1.50700 * 109.47183 * 173.02968 * 11 10 9 13 13 N 1.30523 * 126.34598 * 95.14024 * 12 11 10 14 14 N 1.28594 * 109.67567 * 180.30193 * 13 12 11 15 15 C 1.30523 * 109.66985 * 359.73041 * 14 13 12 16 16 C 1.50700 * 126.34623 * 179.97438 * 15 14 13 17 17 C 1.53002 * 117.49816 * 8.66335 * 16 15 14 18 18 C 1.53001 * 117.49872 * 300.04149 * 16 15 14 19 19 N 1.35487 * 126.34999 * 274.98914 * 12 11 10 20 20 C 1.46508 * 126.98073 * 359.96614 * 19 12 11 21 21 C 1.52995 * 117.49873 * 133.22160 * 20 19 12 22 22 C 1.53002 * 60.00367 * 252.51566 * 21 20 19 23 23 C 1.46903 * 110.99739 * 67.81908 * 10 9 7 24 24 C 1.53006 * 109.47031 * 57.80855 * 23 10 9 25 25 C 1.53004 * 117.49282 * 242.91619 * 24 23 10 26 26 C 1.52998 * 117.49913 * 174.25912 * 24 23 10 27 27 H 0.96996 * 120.00608 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.46915 * 63.23229 * 9 7 2 29 29 H 1.09000 * 109.46617 * 303.23625 * 9 7 2 30 30 H 1.08999 * 109.46870 * 53.03718 * 11 10 9 31 31 H 1.08997 * 109.47494 * 293.03298 * 11 10 9 32 32 H 1.09002 * 115.55024 * 154.37103 * 16 15 14 33 33 H 1.08994 * 117.49889 * 0.02562 * 17 16 15 34 34 H 1.09000 * 117.49728 * 145.02044 * 17 16 15 35 35 H 1.08999 * 117.49859 * 214.97582 * 18 16 15 36 36 H 1.08998 * 117.50037 * 359.97438 * 18 16 15 37 37 H 1.08991 * 115.56384 * 278.91725 * 20 19 12 38 38 H 1.09002 * 117.50164 * 0.02562 * 21 20 19 39 39 H 1.09006 * 117.50185 * 145.02220 * 21 20 19 40 40 H 1.08997 * 117.49697 * 252.51507 * 22 21 20 41 41 H 1.08997 * 117.49543 * 107.48670 * 22 21 20 42 42 H 1.08997 * 109.46974 * 177.80271 * 23 10 9 43 43 H 1.08999 * 109.47326 * 297.80316 * 23 10 9 44 44 H 1.08996 * 115.54886 * 28.58487 * 24 23 10 45 45 H 1.08993 * 117.49991 * 359.97438 * 25 24 23 46 46 H 1.09001 * 117.49572 * 145.02279 * 25 24 23 47 47 H 1.08994 * 117.50226 * 214.97503 * 26 24 23 48 48 H 1.09006 * 117.49704 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5116 -1.1940 0.0000 10 7 4.0012 -2.5768 -0.0774 11 6 5.4426 -2.6410 0.1986 12 6 5.8748 -4.0824 0.2796 13 7 6.3821 -4.7936 -0.6902 14 7 6.6294 -5.9838 -0.2708 15 6 6.2964 -6.0844 0.9872 16 6 6.4266 -7.3130 1.8501 17 6 7.1862 -8.5072 1.2688 18 6 5.6643 -8.5661 1.4147 19 7 5.8115 -4.8796 1.3733 20 6 5.3139 -4.5147 2.7021 21 6 4.3478 -5.4845 3.3855 22 6 3.8316 -4.1566 2.8276 23 6 3.6880 -3.1739 -1.3826 24 6 4.3076 -2.3242 -2.4940 25 6 3.3547 -1.6600 -3.4899 26 6 4.2086 -2.8532 -3.9262 27 1 -0.4851 0.8400 -0.0004 28 1 3.8752 -0.7306 0.9170 29 1 3.8745 -0.6313 -0.8602 30 1 5.6536 -2.1448 1.1458 31 1 5.9885 -2.1425 -0.6023 32 1 6.5217 -7.1281 2.9201 33 1 7.5921 -8.4041 0.2626 34 1 7.7813 -9.1081 1.9565 35 1 5.2582 -9.2058 2.1983 36 1 5.0683 -8.5017 0.5044 37 1 6.0174 -3.9749 3.3359 38 1 4.0827 -6.3942 2.8467 39 1 4.4158 -5.5828 4.4690 40 1 3.5601 -3.3813 3.5440 41 1 3.2268 -4.1926 1.9215 42 1 4.0956 -4.1838 -1.4273 43 1 2.6067 -3.2123 -1.5145 44 1 5.2105 -1.7782 -2.2204 45 1 2.2866 -1.8287 -3.3536 46 1 3.6309 -0.6772 -3.8719 47 1 5.0461 -2.6549 -4.5950 48 1 3.7024 -3.8068 -4.0766 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181409288.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:30 Heat of formation + Delta-G solvation = 156.168424 kcal Electronic energy + Delta-G solvation = -27592.525935 eV Core-core repulsion = 24072.389599 eV Total energy + Delta-G solvation = -3520.136336 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.16491 -39.71427 -38.53859 -38.02670 -36.70936 -34.66338 -33.75094 -32.14342 -29.81760 -28.50370 -26.03100 -25.24122 -24.32267 -23.35769 -23.23315 -23.10504 -23.04220 -21.74128 -20.86240 -20.42964 -18.83290 -18.45433 -17.32461 -17.21307 -16.73780 -16.45219 -16.06452 -15.81792 -15.62339 -15.49300 -15.16325 -14.56174 -14.28855 -14.24096 -13.78558 -13.38662 -13.23222 -13.01084 -12.72517 -12.68969 -12.49994 -12.46093 -12.38067 -12.36410 -12.17336 -12.16834 -11.90902 -11.78509 -11.73605 -11.52021 -11.43611 -11.16438 -11.07729 -10.84052 -10.77383 -10.66808 -9.88768 -9.07043 -8.21019 -6.21940 0.75050 1.38101 1.39215 1.45440 1.48292 1.75944 2.38759 2.52986 2.92594 2.97133 3.12191 3.14602 3.25210 3.43215 3.68691 3.78313 3.81027 3.82453 3.94738 4.02709 4.03527 4.05899 4.13228 4.16619 4.37203 4.50394 4.59762 4.68822 4.73631 4.75993 4.79490 4.81077 4.88151 4.91952 4.95231 5.01134 5.03512 5.10540 5.11593 5.14711 5.22974 5.25720 5.26734 5.30772 5.35437 5.58999 5.93437 6.02529 6.23014 6.62224 6.82720 7.40395 7.75446 8.95616 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.015320 B = 0.004338 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.283775 B = 6453.637799 C = 7521.955142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.016 3.984 3 Si 0.934 3.066 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.244 1.244 7 C -0.492 4.492 8 H 0.034 0.966 9 C 0.176 3.824 10 N -0.516 5.516 11 C 0.137 3.863 12 C 0.195 3.805 13 N -0.323 5.323 14 N -0.336 5.336 15 C 0.208 3.792 16 C -0.093 4.093 17 C -0.144 4.144 18 C -0.151 4.151 19 N -0.432 5.432 20 C 0.033 3.967 21 C -0.141 4.141 22 C -0.161 4.161 23 C 0.110 3.890 24 C -0.178 4.178 25 C -0.175 4.175 26 C -0.159 4.159 27 H 0.263 0.737 28 H 0.034 0.966 29 H -0.001 1.001 30 H 0.103 0.897 31 H 0.065 0.935 32 H 0.150 0.850 33 H 0.085 0.915 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.074 0.926 37 H 0.159 0.841 38 H 0.097 0.903 39 H 0.147 0.853 40 H 0.119 0.881 41 H 0.080 0.920 42 H 0.056 0.944 43 H 0.051 0.949 44 H 0.099 0.901 45 H 0.075 0.925 46 H 0.093 0.907 47 H 0.107 0.893 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.336 -12.316 8.165 20.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.181 4.181 3 Si 0.759 3.241 4 H -0.199 1.199 5 H -0.214 1.214 6 H -0.167 1.167 7 C -0.531 4.531 8 H 0.052 0.948 9 C 0.050 3.950 10 N -0.239 5.239 11 C 0.007 3.993 12 C -0.074 4.074 13 N -0.163 5.163 14 N -0.176 5.176 15 C -0.060 4.060 16 C -0.113 4.113 17 C -0.182 4.182 18 C -0.190 4.190 19 N -0.121 5.121 20 C -0.070 4.070 21 C -0.178 4.178 22 C -0.199 4.199 23 C -0.019 4.019 24 C -0.198 4.198 25 C -0.212 4.212 26 C -0.196 4.196 27 H 0.072 0.928 28 H 0.052 0.948 29 H 0.016 0.984 30 H 0.121 0.879 31 H 0.082 0.918 32 H 0.168 0.832 33 H 0.104 0.896 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.093 0.907 37 H 0.177 0.823 38 H 0.116 0.884 39 H 0.165 0.835 40 H 0.138 0.862 41 H 0.099 0.901 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.117 0.883 45 H 0.093 0.907 46 H 0.112 0.888 47 H 0.125 0.875 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 14.472 -12.813 7.186 20.622 hybrid contribution -0.462 1.969 0.041 2.023 sum 14.010 -10.844 7.227 19.134 Atomic orbital electron populations 1.70038 1.08070 1.27701 1.53273 1.25636 0.95289 1.02430 0.94778 0.85906 0.79826 0.79520 0.78861 1.19914 1.21364 1.16727 1.21005 0.90567 0.92715 1.48803 0.94771 1.19935 0.94414 0.84998 0.95680 1.62128 1.11023 1.21036 1.29715 1.20396 0.89995 0.85851 1.03033 1.24603 1.01903 0.97148 0.83748 1.74189 1.17925 0.99127 1.25038 1.74069 1.22566 1.12230 1.08702 1.24317 0.99699 0.88683 0.93256 1.20362 1.10261 0.83015 0.97657 1.23068 0.94742 0.97485 1.02908 1.23100 0.95141 0.97285 1.03450 1.45504 1.45835 1.09571 1.11141 1.22365 0.94283 1.08268 0.82120 1.23502 0.97996 0.93746 1.02528 1.23278 0.92898 1.00087 1.03655 1.21420 0.98708 0.95825 0.85939 1.22764 1.00944 1.03927 0.92166 1.22877 0.96880 0.97383 1.04071 1.22901 1.02465 0.97660 0.96614 0.92766 0.94761 0.98366 0.87854 0.91754 0.83225 0.89615 0.84915 0.84807 0.90749 0.82343 0.88449 0.83502 0.86235 0.90126 0.92589 0.93053 0.88300 0.90671 0.88812 0.87454 0.89260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.76 13.96 21.45 0.30 -57.46 16 2 C 0.02 0.87 5.47 84.65 0.46 1.34 16 3 Si 0.93 42.37 27.41 68.60 1.88 44.25 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 6 H -0.24 -10.02 6.64 99.48 0.66 -9.36 16 7 C -0.49 -26.75 9.06 25.60 0.23 -26.52 16 8 H 0.03 2.12 7.59 -2.91 -0.02 2.10 16 9 C 0.18 7.78 3.60 85.56 0.31 8.09 16 10 N -0.52 -20.14 4.43 -905.38 -4.01 -24.15 16 11 C 0.14 4.54 5.11 85.56 0.44 4.98 16 12 C 0.19 6.54 6.41 137.98 0.88 7.42 16 13 N -0.32 -12.18 11.58 -50.16 -0.58 -12.76 16 14 N -0.34 -11.89 11.83 -50.15 -0.59 -12.49 16 15 C 0.21 5.87 7.44 137.98 1.03 6.90 16 16 C -0.09 -1.69 4.83 -11.54 -0.06 -1.75 16 17 C -0.14 -2.29 10.15 30.60 0.31 -1.98 16 18 C -0.15 -2.42 10.23 30.60 0.31 -2.10 16 19 N -0.43 -12.14 3.04 -481.73 -1.46 -13.60 16 20 C 0.03 0.68 6.18 44.99 0.28 0.95 16 21 C -0.14 -2.27 9.25 30.59 0.28 -1.99 16 22 C -0.16 -3.90 10.45 30.60 0.32 -3.58 16 23 C 0.11 4.43 5.25 86.30 0.45 4.89 16 24 C -0.18 -6.53 3.99 -10.79 -0.04 -6.58 16 25 C -0.17 -6.38 10.18 30.62 0.31 -6.07 16 26 C -0.16 -5.09 10.25 30.62 0.31 -4.78 16 27 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 28 H 0.03 1.47 7.22 -2.39 -0.02 1.45 16 29 H 0.00 -0.06 5.91 -2.39 -0.01 -0.08 16 30 H 0.10 3.01 7.89 -2.39 -0.02 2.99 16 31 H 0.06 2.12 6.25 -2.39 -0.01 2.11 16 32 H 0.15 1.88 7.73 -2.39 -0.02 1.87 16 33 H 0.09 1.79 7.92 -2.39 -0.02 1.77 16 34 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.16 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.10 1.73 7.53 -2.39 -0.02 1.71 16 39 H 0.15 1.32 8.14 -2.38 -0.02 1.30 16 40 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 41 H 0.08 2.72 7.86 -2.39 -0.02 2.70 16 42 H 0.06 2.32 6.51 -2.39 -0.02 2.31 16 43 H 0.05 2.40 6.84 -2.39 -0.02 2.38 16 44 H 0.10 3.53 6.24 -2.39 -0.01 3.52 16 45 H 0.07 3.09 8.03 -2.39 -0.02 3.07 16 46 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 47 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 48 H 0.09 2.83 8.14 -2.38 -0.02 2.81 16 Total: -1.00 -70.76 386.02 2.27 -68.49 By element: Atomic # 1 Polarization: 27.58 SS G_CDS: 0.90 Total: 28.49 kcal Atomic # 6 Polarization: -26.61 SS G_CDS: 5.83 Total: -20.78 kcal Atomic # 7 Polarization: -114.11 SS G_CDS: -6.34 Total: -120.45 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 1.88 Total: 44.25 kcal Total: -70.76 2.27 -68.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181409288.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 224.658 kcal (2) G-P(sol) polarization free energy of solvation -70.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds