Wall clock time and date at job start Tue Mar 31 2020 10:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.48846 * 2 1 4 4 C 1.53046 * 109.48633 * 239.95913 * 2 1 3 5 5 N 1.46961 * 109.36494 * 181.60707 * 4 2 1 6 6 C 1.46903 * 110.99911 * 183.18975 * 5 4 2 7 7 C 1.53000 * 109.46761 * 162.00872 * 6 5 4 8 8 C 1.53004 * 109.47047 * 185.76922 * 7 6 5 9 9 C 1.53005 * 109.47072 * 305.76827 * 7 6 5 10 10 O 1.42896 * 109.47256 * 65.76893 * 7 6 5 11 11 C 1.46953 * 110.87685 * 59.32276 * 5 4 2 12 12 C 1.53052 * 109.36386 * 300.67444 * 11 5 4 13 13 N 1.46953 * 109.50691 * 120.05899 * 2 1 3 14 14 C 1.46900 * 110.99807 * 303.16256 * 13 2 1 15 15 C 1.53005 * 109.46731 * 190.00353 * 14 13 2 16 16 C 1.53000 * 109.46704 * 180.02562 * 15 14 13 17 17 S 1.81004 * 109.47099 * 180.02562 * 16 15 14 18 18 C 1.76203 * 100.00101 * 180.02562 * 17 16 15 19 19 H 1.07997 * 120.00316 * 359.97438 * 18 17 16 20 20 C 1.38798 * 119.99662 * 179.97438 * 18 17 16 21 21 N 1.31636 * 119.99790 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 120.00382 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47254 * 89.99588 * 22 20 18 24 24 H 1.48498 * 109.47012 * 210.00041 * 22 20 18 25 25 H 1.48497 * 109.47004 * 329.99880 * 22 20 18 26 26 H 1.09004 * 109.46884 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47233 * 300.03816 * 1 2 3 28 28 H 1.08994 * 109.47891 * 60.04261 * 1 2 3 29 29 H 1.09000 * 109.48947 * 61.64019 * 4 2 1 30 30 H 1.09000 * 109.50896 * 301.58673 * 4 2 1 31 31 H 1.08998 * 109.47117 * 42.00551 * 6 5 4 32 32 H 1.09001 * 109.47077 * 282.00612 * 6 5 4 33 33 H 1.09003 * 109.46932 * 59.99906 * 8 7 6 34 34 H 1.08992 * 109.47238 * 179.97438 * 8 7 6 35 35 H 1.08997 * 109.47336 * 300.00315 * 8 7 6 36 36 H 1.08996 * 109.46954 * 59.99942 * 9 7 6 37 37 H 1.09002 * 109.46818 * 180.02562 * 9 7 6 38 38 H 1.09003 * 109.47243 * 300.00299 * 9 7 6 39 39 H 0.96703 * 114.00115 * 179.97438 * 10 7 6 40 40 H 1.08998 * 109.49288 * 60.64646 * 11 5 4 41 41 H 1.09000 * 109.48753 * 180.71586 * 11 5 4 42 42 H 1.08996 * 109.49355 * 298.43941 * 12 11 5 43 43 H 1.09004 * 109.50673 * 178.37895 * 12 11 5 44 44 H 1.08998 * 109.47644 * 310.00336 * 14 13 2 45 45 H 1.08995 * 109.47060 * 70.00776 * 14 13 2 46 46 H 1.08998 * 109.47026 * 299.99794 * 15 14 13 47 47 H 1.08995 * 109.47003 * 60.00388 * 15 14 13 48 48 H 1.08998 * 109.47489 * 299.99872 * 16 15 14 49 49 H 1.09003 * 109.47536 * 60.00315 * 16 15 14 50 50 H 0.96994 * 119.99997 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0405 -0.7223 -1.2490 5 7 3.5096 -0.7545 -1.2270 6 6 4.0410 -1.3741 -2.4484 7 6 5.5157 -1.0000 -2.6099 8 6 6.0307 -1.5240 -3.9520 9 6 5.6634 0.5223 -2.5661 10 8 6.2741 -1.5828 -1.5483 11 6 4.0003 -1.4483 -0.0281 12 6 3.4899 -0.7259 1.2209 13 7 2.0207 -0.6938 1.1989 14 6 1.4893 -0.0742 2.4202 15 6 2.2080 -0.6538 3.6403 16 6 1.6541 -0.0089 4.9124 17 16 2.5047 -0.6940 6.3557 18 6 1.6934 0.1976 7.6408 19 1 0.9228 0.9141 7.3977 20 6 2.0447 -0.0209 8.9657 21 7 1.4390 0.6456 9.9258 22 14 3.3781 -1.2596 9.3864 23 1 4.6975 -0.5785 9.4081 24 1 3.1030 -1.8487 10.7215 25 1 3.3937 -2.3364 8.3640 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5144 0.8896 28 1 -0.3634 0.5131 -0.8903 29 1 1.7017 -0.1927 -2.1394 30 1 1.6546 -1.7416 -1.2633 31 1 3.4788 -1.0168 -3.3112 32 1 3.9468 -2.4576 -2.3767 33 1 5.4523 -1.0793 -4.7618 34 1 7.0812 -1.2571 -4.0673 35 1 5.9254 -2.6084 -3.9832 36 1 5.2965 0.8956 -1.6101 37 1 6.7140 0.7888 -2.6817 38 1 5.0849 0.9669 -3.3760 39 1 7.2203 -1.3871 -1.5872 40 1 3.6367 -2.4758 -0.0281 41 1 5.0903 -1.4479 -0.0283 42 1 3.8757 0.2933 1.2348 43 1 3.8286 -1.2553 2.1116 44 1 1.6510 1.0030 2.3811 45 1 0.4215 -0.2788 2.4964 46 1 2.0462 -1.7310 3.6794 47 1 3.2759 -0.4492 3.5641 48 1 1.8154 1.0684 4.8735 49 1 0.5862 -0.2138 4.9884 50 1 1.6847 0.4932 10.8516 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189461730.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:14 Heat of formation + Delta-G solvation = -54.774299 kcal Electronic energy + Delta-G solvation = -25113.693819 eV Core-core repulsion = 21687.561521 eV Total energy + Delta-G solvation = -3426.132299 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.193 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.99969 -38.46915 -35.83461 -33.51520 -32.61160 -32.41030 -31.65055 -28.36578 -27.63924 -27.08869 -25.76275 -25.11552 -23.82519 -22.14029 -20.79040 -20.33628 -19.61274 -17.45567 -17.01692 -16.23855 -15.84285 -15.58054 -15.29576 -15.05115 -14.98243 -14.83112 -14.23106 -13.93737 -13.85081 -13.59004 -13.47102 -12.82933 -12.74792 -12.62276 -12.54665 -12.20770 -12.16331 -12.06914 -11.91264 -11.75057 -11.68473 -11.47757 -11.27013 -11.12931 -11.06805 -11.01816 -10.74916 -10.56293 -10.28432 -10.07940 -10.01204 -9.72197 -8.97850 -8.52621 -8.50259 -8.23166 -6.90792 -6.25763 -3.97570 3.03686 3.32288 3.48182 3.58358 3.63838 3.82971 3.95351 4.34344 4.42647 4.63459 4.69435 4.74143 4.83568 4.93092 4.99322 5.12561 5.13095 5.19128 5.22055 5.27000 5.27486 5.39311 5.39923 5.43491 5.50469 5.54046 5.57229 5.60825 5.67673 5.69629 5.70325 5.73762 5.85925 5.92719 5.97726 6.08081 6.11405 6.16742 6.21539 6.29725 6.52825 6.67108 6.84237 6.89209 7.15962 7.17775 7.38158 7.98132 8.47081 9.20261 10.83762 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.020393 B = 0.002487 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.667024 B =11254.208149 C =12257.572924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.085 3.915 3 H 0.047 0.953 4 C 0.062 3.938 5 N -0.534 5.534 6 C 0.070 3.930 7 C 0.131 3.869 8 C -0.178 4.178 9 C -0.166 4.166 10 O -0.554 6.554 11 C 0.052 3.948 12 C 0.051 3.949 13 N -0.535 5.535 14 C 0.060 3.940 15 C -0.104 4.104 16 C -0.081 4.081 17 S -0.216 6.216 18 C -0.501 4.501 19 H 0.087 0.913 20 C 0.090 3.910 21 N -0.883 5.883 22 Si 0.862 3.138 23 H -0.269 1.269 24 H -0.276 1.276 25 H -0.237 1.237 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.040 0.960 31 H 0.082 0.918 32 H 0.042 0.958 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.078 0.922 37 H 0.048 0.952 38 H 0.058 0.942 39 H 0.372 0.628 40 H 0.035 0.965 41 H 0.109 0.891 42 H 0.038 0.962 43 H 0.088 0.912 44 H 0.033 0.967 45 H 0.077 0.923 46 H 0.074 0.926 47 H 0.068 0.932 48 H 0.065 0.935 49 H 0.067 0.933 50 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.358 -2.805 -30.196 30.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.024 4.024 3 H 0.065 0.935 4 C -0.066 4.066 5 N -0.258 5.258 6 C -0.059 4.059 7 C 0.090 3.910 8 C -0.236 4.236 9 C -0.224 4.224 10 O -0.361 6.361 11 C -0.075 4.075 12 C -0.077 4.077 13 N -0.261 5.261 14 C -0.069 4.069 15 C -0.142 4.142 16 C -0.230 4.230 17 S 0.012 5.988 18 C -0.648 4.648 19 H 0.105 0.895 20 C -0.118 4.118 21 N -0.520 5.520 22 Si 0.687 3.313 23 H -0.194 1.194 24 H -0.201 1.201 25 H -0.161 1.161 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.059 0.941 31 H 0.100 0.900 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.220 0.780 40 H 0.053 0.947 41 H 0.127 0.873 42 H 0.057 0.943 43 H 0.106 0.894 44 H 0.051 0.949 45 H 0.095 0.905 46 H 0.093 0.907 47 H 0.087 0.913 48 H 0.083 0.917 49 H 0.086 0.914 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.558 -3.768 -29.754 30.700 hybrid contribution 0.020 0.792 0.197 0.816 sum 6.578 -2.977 -29.557 30.426 Atomic orbital electron populations 1.21858 0.94143 1.02601 1.01897 1.21618 0.95065 0.95906 0.89809 0.93543 1.22200 0.87432 0.99532 0.97430 1.62133 1.07821 1.53670 1.02206 1.22048 0.93033 0.97572 0.93221 1.21217 0.91144 0.92614 0.86015 1.22475 1.01604 1.02034 0.97498 1.22316 1.00915 0.95191 1.03932 1.86570 1.23037 1.76886 1.49623 1.22509 1.01975 0.95022 0.88035 1.22315 0.87300 0.99794 0.98319 1.62274 1.08537 1.53551 1.01719 1.22180 0.99907 0.96171 0.88607 1.21487 0.99911 1.01086 0.91742 1.23007 1.02155 1.01912 0.95898 1.84145 1.55016 1.58603 1.01069 1.22128 1.24845 1.26730 0.91128 0.89451 1.24806 0.96118 0.95623 0.95204 1.69941 1.41297 1.40610 1.00116 0.86660 0.82209 0.82972 0.79456 1.19408 1.20150 1.16125 0.91829 0.91989 0.92366 0.90831 0.94134 0.90011 0.94011 0.91654 0.92122 0.91944 0.90265 0.93317 0.92259 0.78044 0.94682 0.87325 0.94326 0.89357 0.94903 0.90467 0.90734 0.91330 0.91660 0.91384 0.92017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 8.87 37.16 0.33 -1.07 16 2 C 0.08 0.92 2.52 -67.66 -0.17 0.75 16 3 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 4 C 0.06 0.61 4.86 -3.77 -0.02 0.59 16 5 N -0.53 -5.33 3.64 -234.47 -0.85 -6.18 16 6 C 0.07 0.58 4.34 -3.82 -0.02 0.56 16 7 C 0.13 0.93 1.15 -90.62 -0.10 0.83 16 8 C -0.18 -0.97 8.82 37.16 0.33 -0.64 16 9 C -0.17 -1.18 8.59 37.16 0.32 -0.86 16 10 O -0.55 -4.43 9.96 -35.23 -0.35 -4.78 16 11 C 0.05 0.59 5.29 -3.77 -0.02 0.57 16 12 C 0.05 0.63 4.93 -3.76 -0.02 0.62 16 13 N -0.54 -6.78 4.68 -226.49 -1.06 -7.84 16 14 C 0.06 0.82 4.46 -3.82 -0.02 0.81 16 15 C -0.10 -1.66 4.48 -26.73 -0.12 -1.78 16 16 C -0.08 -1.60 5.67 37.16 0.21 -1.39 16 17 S -0.22 -5.37 19.41 -107.50 -2.09 -7.46 16 18 C -0.50 -14.76 10.04 30.94 0.31 -14.44 16 19 H 0.09 2.74 8.03 -52.49 -0.42 2.31 16 20 C 0.09 2.69 5.50 -17.43 -0.10 2.59 16 21 N -0.88 -27.10 13.97 55.49 0.78 -26.32 16 22 Si 0.86 21.86 27.74 -169.99 -4.72 17.15 16 23 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.24 -5.90 6.74 56.52 0.38 -5.52 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.62 6.60 -51.93 -0.34 0.28 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.60 8.01 -51.93 -0.42 0.19 16 30 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.57 7.87 -51.93 -0.41 0.16 16 32 H 0.04 0.39 8.02 -51.93 -0.42 -0.03 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.74 7.45 -51.93 -0.39 0.35 16 37 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.37 1.74 9.05 45.56 0.41 2.15 16 40 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.11 1.25 5.21 -51.93 -0.27 0.98 16 42 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.09 1.16 5.99 -51.93 -0.31 0.85 16 44 H 0.03 0.46 8.08 -51.93 -0.42 0.04 16 45 H 0.08 1.04 6.86 -51.93 -0.36 0.68 16 46 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 47 H 0.07 1.10 6.26 -51.93 -0.33 0.77 16 48 H 0.06 1.30 8.14 -51.92 -0.42 0.88 16 49 H 0.07 1.35 8.14 -51.92 -0.42 0.93 16 50 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 389.58 15.07 5.87 5.87 Total: -1.00 -31.72 389.58 -10.24 -41.96 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -8.74 Total: 0.49 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: 0.92 Total: -12.88 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: -1.14 Total: -40.35 kcal Atomic # 8 Polarization: -4.43 SS G_CDS: -0.35 Total: -4.78 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.72 Total: 17.15 kcal Atomic # 16 Polarization: -5.37 SS G_CDS: -2.09 Total: -7.46 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.72 -10.24 -41.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189461730.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.819 kcal (2) G-P(sol) polarization free energy of solvation -31.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds