Wall clock time and date at job start Tue Mar 31 2020 10:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.48846 * 2 1 4 4 C 1.53046 * 109.48633 * 239.95913 * 2 1 3 5 5 N 1.46961 * 109.36494 * 181.60707 * 4 2 1 6 6 C 1.46903 * 110.99911 * 183.18975 * 5 4 2 7 7 C 1.53000 * 109.46761 * 162.00872 * 6 5 4 8 8 C 1.53004 * 109.47047 * 185.76922 * 7 6 5 9 9 C 1.53005 * 109.47072 * 305.76827 * 7 6 5 10 10 O 1.42896 * 109.47256 * 65.76893 * 7 6 5 11 11 C 1.46953 * 110.87685 * 59.32276 * 5 4 2 12 12 C 1.53052 * 109.36386 * 300.67444 * 11 5 4 13 13 N 1.46953 * 109.50691 * 120.05899 * 2 1 3 14 14 C 1.46900 * 110.99807 * 303.16256 * 13 2 1 15 15 C 1.53005 * 109.46731 * 190.00353 * 14 13 2 16 16 C 1.53000 * 109.46704 * 180.02562 * 15 14 13 17 17 S 1.81004 * 109.47099 * 180.02562 * 16 15 14 18 18 C 1.76203 * 100.00101 * 180.02562 * 17 16 15 19 19 H 1.07997 * 120.00316 * 359.97438 * 18 17 16 20 20 C 1.38798 * 119.99662 * 179.97438 * 18 17 16 21 21 N 1.31636 * 119.99790 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 120.00382 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47254 * 89.99588 * 22 20 18 24 24 H 1.48498 * 109.47012 * 210.00041 * 22 20 18 25 25 H 1.48497 * 109.47004 * 329.99880 * 22 20 18 26 26 H 1.09004 * 109.46884 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47233 * 300.03816 * 1 2 3 28 28 H 1.08994 * 109.47891 * 60.04261 * 1 2 3 29 29 H 1.09000 * 109.48947 * 61.64019 * 4 2 1 30 30 H 1.09000 * 109.50896 * 301.58673 * 4 2 1 31 31 H 1.08998 * 109.47117 * 42.00551 * 6 5 4 32 32 H 1.09001 * 109.47077 * 282.00612 * 6 5 4 33 33 H 1.09003 * 109.46932 * 59.99906 * 8 7 6 34 34 H 1.08992 * 109.47238 * 179.97438 * 8 7 6 35 35 H 1.08997 * 109.47336 * 300.00315 * 8 7 6 36 36 H 1.08996 * 109.46954 * 59.99942 * 9 7 6 37 37 H 1.09002 * 109.46818 * 180.02562 * 9 7 6 38 38 H 1.09003 * 109.47243 * 300.00299 * 9 7 6 39 39 H 0.96703 * 114.00115 * 179.97438 * 10 7 6 40 40 H 1.08998 * 109.49288 * 60.64646 * 11 5 4 41 41 H 1.09000 * 109.48753 * 180.71586 * 11 5 4 42 42 H 1.08996 * 109.49355 * 298.43941 * 12 11 5 43 43 H 1.09004 * 109.50673 * 178.37895 * 12 11 5 44 44 H 1.08998 * 109.47644 * 310.00336 * 14 13 2 45 45 H 1.08995 * 109.47060 * 70.00776 * 14 13 2 46 46 H 1.08998 * 109.47026 * 299.99794 * 15 14 13 47 47 H 1.08995 * 109.47003 * 60.00388 * 15 14 13 48 48 H 1.08998 * 109.47489 * 299.99872 * 16 15 14 49 49 H 1.09003 * 109.47536 * 60.00315 * 16 15 14 50 50 H 0.96994 * 119.99997 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0405 -0.7223 -1.2490 5 7 3.5096 -0.7545 -1.2270 6 6 4.0410 -1.3741 -2.4484 7 6 5.5157 -1.0000 -2.6099 8 6 6.0307 -1.5240 -3.9520 9 6 5.6634 0.5223 -2.5661 10 8 6.2741 -1.5828 -1.5483 11 6 4.0003 -1.4483 -0.0281 12 6 3.4899 -0.7259 1.2209 13 7 2.0207 -0.6938 1.1989 14 6 1.4893 -0.0742 2.4202 15 6 2.2080 -0.6538 3.6403 16 6 1.6541 -0.0089 4.9124 17 16 2.5047 -0.6940 6.3557 18 6 1.6934 0.1976 7.6408 19 1 0.9228 0.9141 7.3977 20 6 2.0447 -0.0209 8.9657 21 7 1.4390 0.6456 9.9258 22 14 3.3781 -1.2596 9.3864 23 1 4.6975 -0.5785 9.4081 24 1 3.1030 -1.8487 10.7215 25 1 3.3937 -2.3364 8.3640 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5144 0.8896 28 1 -0.3634 0.5131 -0.8903 29 1 1.7017 -0.1927 -2.1394 30 1 1.6546 -1.7416 -1.2633 31 1 3.4788 -1.0168 -3.3112 32 1 3.9468 -2.4576 -2.3767 33 1 5.4523 -1.0793 -4.7618 34 1 7.0812 -1.2571 -4.0673 35 1 5.9254 -2.6084 -3.9832 36 1 5.2965 0.8956 -1.6101 37 1 6.7140 0.7888 -2.6817 38 1 5.0849 0.9669 -3.3760 39 1 7.2203 -1.3871 -1.5872 40 1 3.6367 -2.4758 -0.0281 41 1 5.0903 -1.4479 -0.0283 42 1 3.8757 0.2933 1.2348 43 1 3.8286 -1.2553 2.1116 44 1 1.6510 1.0030 2.3811 45 1 0.4215 -0.2788 2.4964 46 1 2.0462 -1.7310 3.6794 47 1 3.2759 -0.4492 3.5641 48 1 1.8154 1.0684 4.8735 49 1 0.5862 -0.2138 4.9884 50 1 1.6847 0.4932 10.8516 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189461730.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:13 Heat of formation + Delta-G solvation = -77.102780 kcal Electronic energy + Delta-G solvation = -25114.662055 eV Core-core repulsion = 21687.561521 eV Total energy + Delta-G solvation = -3427.100534 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.83843 -39.17825 -36.75063 -34.69800 -34.54623 -33.31244 -32.64215 -29.34759 -28.13398 -27.97732 -27.83981 -26.23166 -24.88219 -22.97181 -22.02895 -20.95080 -20.56197 -19.61595 -17.67578 -17.16458 -17.05208 -16.63441 -16.53963 -16.25583 -16.21068 -15.92689 -15.33763 -15.20196 -14.92105 -14.66605 -14.30477 -14.14833 -13.86018 -13.63779 -13.43287 -13.32737 -13.11714 -13.04904 -12.95835 -12.84522 -12.66717 -12.61564 -12.46068 -12.28538 -12.15083 -11.99345 -11.96432 -11.83119 -11.70748 -11.34267 -11.19963 -11.16476 -10.66533 -10.56519 -9.35984 -9.20060 -8.99871 -8.52497 -6.23846 1.11690 1.31524 1.47648 1.73102 2.24494 2.67498 2.85333 2.86383 2.91868 3.36943 3.82333 3.84884 3.94849 4.00866 4.07658 4.13189 4.19233 4.22491 4.32526 4.36187 4.43232 4.48025 4.54593 4.61779 4.63763 4.71361 4.76665 4.77937 4.79478 4.85879 4.88201 4.95739 4.99692 5.04825 5.09727 5.12320 5.16499 5.24420 5.25487 5.35585 5.40934 5.54477 5.69259 5.98682 6.03534 6.09429 6.21941 6.23112 6.91462 6.96691 8.60622 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.020393 B = 0.002487 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.667024 B =11254.208149 C =12257.572924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.084 3.916 3 H 0.039 0.961 4 C 0.065 3.935 5 N -0.536 5.536 6 C 0.067 3.933 7 C 0.131 3.869 8 C -0.172 4.172 9 C -0.160 4.160 10 O -0.573 6.573 11 C 0.062 3.938 12 C 0.053 3.947 13 N -0.540 5.540 14 C 0.070 3.930 15 C -0.090 4.090 16 C -0.068 4.068 17 S -0.220 6.220 18 C -0.522 4.522 19 H 0.050 0.950 20 C 0.037 3.963 21 N -0.922 5.922 22 Si 0.926 3.074 23 H -0.261 1.261 24 H -0.262 1.262 25 H -0.229 1.229 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.033 0.967 31 H 0.099 0.901 32 H 0.030 0.970 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.385 0.615 40 H 0.020 0.980 41 H 0.108 0.892 42 H 0.031 0.969 43 H 0.079 0.921 44 H 0.032 0.968 45 H 0.082 0.918 46 H 0.072 0.928 47 H 0.070 0.930 48 H 0.063 0.937 49 H 0.066 0.934 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.367 -3.527 -32.433 33.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.025 4.025 3 H 0.057 0.943 4 C -0.063 4.063 5 N -0.260 5.260 6 C -0.061 4.061 7 C 0.090 3.910 8 C -0.230 4.230 9 C -0.217 4.217 10 O -0.382 6.382 11 C -0.066 4.066 12 C -0.075 4.075 13 N -0.266 5.266 14 C -0.059 4.059 15 C -0.128 4.128 16 C -0.217 4.217 17 S 0.008 5.992 18 C -0.669 4.669 19 H 0.068 0.932 20 C -0.168 4.168 21 N -0.560 5.560 22 Si 0.747 3.253 23 H -0.186 1.186 24 H -0.187 1.187 25 H -0.153 1.153 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.097 0.903 29 H 0.113 0.887 30 H 0.052 0.948 31 H 0.117 0.883 32 H 0.049 0.951 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.235 0.765 40 H 0.039 0.961 41 H 0.126 0.874 42 H 0.049 0.951 43 H 0.097 0.903 44 H 0.051 0.949 45 H 0.100 0.900 46 H 0.090 0.910 47 H 0.089 0.911 48 H 0.081 0.919 49 H 0.085 0.915 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.567 -4.484 -32.008 33.195 hybrid contribution -0.350 1.094 0.800 1.399 sum 7.217 -3.390 -31.209 32.211 Atomic orbital electron populations 1.21828 0.92986 1.02597 1.02615 1.21709 0.95985 0.95379 0.89400 0.94305 1.22218 0.87269 0.99216 0.97607 1.62164 1.08016 1.53524 1.02322 1.22171 0.94180 0.96845 0.92897 1.21243 0.90439 0.92600 0.86690 1.22409 1.02366 1.01628 0.96583 1.22240 1.01626 0.95070 1.02783 1.86517 1.24306 1.77144 1.50244 1.22355 1.01855 0.94052 0.88340 1.22266 0.87302 0.99284 0.98639 1.62306 1.08573 1.53778 1.01928 1.22018 0.99832 0.95940 0.88116 1.21359 1.00092 1.00604 0.90780 1.23055 1.01677 1.01804 0.95132 1.83847 1.55335 1.58379 1.01600 1.22334 1.24575 1.26770 0.93242 0.93166 1.25797 0.98455 0.97564 0.94996 1.70039 1.42937 1.42212 1.00833 0.85699 0.79141 0.80566 0.79855 1.18570 1.18675 1.15281 0.92124 0.92668 0.90312 0.88714 0.94847 0.88299 0.95132 0.90667 0.91074 0.92485 0.92622 0.92230 0.91604 0.76493 0.96147 0.87403 0.95096 0.90283 0.94944 0.89953 0.90964 0.91128 0.91866 0.91481 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 8.87 71.98 0.64 -1.82 16 2 C 0.08 1.70 2.52 44.92 0.11 1.82 16 3 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 4 C 0.06 1.15 4.86 86.31 0.42 1.57 16 5 N -0.54 -10.03 3.64 -895.72 -3.26 -13.29 16 6 C 0.07 1.00 4.34 86.30 0.37 1.38 16 7 C 0.13 1.65 1.15 -10.79 -0.01 1.63 16 8 C -0.17 -1.48 8.82 71.98 0.63 -0.85 16 9 C -0.16 -1.99 8.59 71.98 0.62 -1.37 16 10 O -0.57 -8.50 9.96 -148.98 -1.48 -9.98 16 11 C 0.06 1.38 5.29 86.31 0.46 1.83 16 12 C 0.05 1.30 4.93 86.31 0.43 1.73 16 13 N -0.54 -13.18 4.68 -870.48 -4.07 -17.25 16 14 C 0.07 1.85 4.46 86.30 0.38 2.24 16 15 C -0.09 -2.80 4.48 30.60 0.14 -2.66 16 16 C -0.07 -2.67 5.67 71.98 0.41 -2.26 16 17 S -0.22 -10.84 19.41 -56.49 -1.10 -11.94 16 18 C -0.52 -31.39 10.04 67.95 0.68 -30.70 16 19 H 0.05 3.28 8.03 -2.91 -0.02 3.26 16 20 C 0.04 2.18 5.50 84.86 0.47 2.65 16 21 N -0.92 -57.55 13.97 21.65 0.30 -57.25 16 22 Si 0.93 44.90 27.74 68.60 1.90 46.80 16 23 H -0.26 -12.25 7.11 99.48 0.71 -11.55 16 24 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 25 H -0.23 -10.75 6.74 99.48 0.67 -10.07 16 26 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 27 H 0.05 1.03 6.60 -2.39 -0.02 1.01 16 28 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.09 1.29 8.01 -2.39 -0.02 1.27 16 30 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.10 1.12 7.87 -2.39 -0.02 1.10 16 32 H 0.03 0.53 8.02 -2.39 -0.02 0.51 16 33 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.05 0.98 7.45 -2.39 -0.02 0.96 16 37 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.39 3.09 9.05 -74.06 -0.67 2.42 16 40 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.11 2.44 5.21 -2.39 -0.01 2.43 16 42 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.08 2.06 5.99 -2.39 -0.01 2.04 16 44 H 0.03 0.87 8.08 -2.39 -0.02 0.85 16 45 H 0.08 2.11 6.86 -2.39 -0.02 2.09 16 46 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 47 H 0.07 2.20 6.26 -2.39 -0.01 2.18 16 48 H 0.06 2.52 8.14 -2.40 -0.02 2.50 16 49 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 50 H 0.28 15.89 8.31 -92.71 -0.77 15.12 16 Total: -1.00 -68.55 389.58 -1.78 -70.33 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.18 Total: 17.40 kcal Atomic # 6 Polarization: -30.57 SS G_CDS: 5.75 Total: -24.82 kcal Atomic # 7 Polarization: -80.76 SS G_CDS: -7.03 Total: -87.79 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: -1.48 Total: -9.98 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.90 Total: 46.80 kcal Atomic # 16 Polarization: -10.84 SS G_CDS: -1.10 Total: -11.94 kcal Total: -68.55 -1.78 -70.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189461730.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.772 kcal (2) G-P(sol) polarization free energy of solvation -68.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds