Wall clock time and date at job start Tue Mar 31 2020 10:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.50983 * 2 1 4 4 C 1.53059 * 109.48874 * 239.94516 * 2 1 3 5 5 N 1.46950 * 109.36182 * 181.63184 * 4 2 1 6 6 C 1.46902 * 110.99566 * 183.19094 * 5 4 2 7 7 C 1.53002 * 109.46848 * 302.24399 * 6 5 4 8 8 C 1.53010 * 109.46987 * 180.02562 * 7 6 5 9 9 S 1.80995 * 109.47218 * 180.02562 * 8 7 6 10 10 C 1.76192 * 100.00138 * 179.97438 * 9 8 7 11 11 H 1.07996 * 120.00046 * 359.97438 * 10 9 8 12 12 C 1.38798 * 120.00151 * 179.97438 * 10 9 8 13 13 N 1.31629 * 119.99939 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00172 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47133 * 90.00037 * 14 12 10 16 16 H 1.48500 * 109.47490 * 209.99966 * 14 12 10 17 17 H 1.48504 * 109.47109 * 330.00305 * 14 12 10 18 18 C 1.46958 * 110.88450 * 59.32430 * 5 4 2 19 19 C 1.53055 * 109.35778 * 300.67496 * 18 5 4 20 20 N 1.46950 * 109.36427 * 58.40531 * 19 18 5 21 21 C 1.46901 * 111.00202 * 176.80946 * 20 19 18 22 22 C 1.53005 * 109.46878 * 293.01536 * 21 20 19 23 23 C 1.53000 * 109.47270 * 186.97479 * 22 21 20 24 24 C 1.52995 * 109.47446 * 306.97818 * 22 21 20 25 25 O 1.42907 * 109.47119 * 66.97564 * 22 21 20 26 26 H 1.08995 * 109.46764 * 299.94494 * 1 2 3 27 27 H 1.09000 * 109.47165 * 59.94596 * 1 2 3 28 28 H 1.08996 * 109.47165 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.48699 * 61.66406 * 4 2 1 30 30 H 1.09001 * 109.50662 * 301.61161 * 4 2 1 31 31 H 1.08999 * 109.47442 * 62.24556 * 6 5 4 32 32 H 1.09004 * 109.47454 * 182.24745 * 6 5 4 33 33 H 1.09003 * 109.47483 * 299.99580 * 7 6 5 34 34 H 1.08995 * 109.47084 * 60.00712 * 7 6 5 35 35 H 1.09003 * 109.46311 * 299.99864 * 8 7 6 36 36 H 1.08995 * 109.47278 * 59.99754 * 8 7 6 37 37 H 0.97006 * 120.00162 * 179.97438 * 13 12 10 38 38 H 1.08993 * 109.48734 * 180.71004 * 18 5 4 39 39 H 1.08994 * 109.50918 * 60.65193 * 18 5 4 40 40 H 1.08990 * 109.48970 * 298.42997 * 19 18 5 41 41 H 1.09009 * 109.50254 * 178.37843 * 19 18 5 42 42 H 1.09003 * 109.46979 * 53.01068 * 21 20 19 43 43 H 1.08997 * 109.47717 * 173.01395 * 21 20 19 44 44 H 1.09000 * 109.46798 * 59.99856 * 23 22 21 45 45 H 1.09001 * 109.47043 * 180.02562 * 23 22 21 46 46 H 1.09002 * 109.47078 * 299.99799 * 23 22 21 47 47 H 1.09007 * 109.47296 * 65.38159 * 24 22 21 48 48 H 1.08994 * 109.47544 * 185.39007 * 24 22 21 49 49 H 1.09008 * 109.46944 * 305.38718 * 24 22 21 50 50 H 0.96698 * 113.99643 * 60.00235 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0407 -0.7226 -1.2489 5 7 3.5096 -0.7553 -1.2265 6 6 4.0410 -1.3752 -2.4477 7 6 3.4758 -2.7899 -2.5890 8 6 4.0297 -3.4358 -3.8607 9 16 3.3605 -5.1091 -4.0283 10 6 4.1399 -5.6014 -5.5298 11 1 4.8026 -4.9202 -6.0428 12 6 3.9022 -6.8647 -6.0533 13 7 3.0941 -7.6948 -5.4284 14 14 4.7281 -7.3864 -7.6456 15 1 6.0308 -8.0302 -7.3397 16 1 3.8558 -8.3507 -8.3629 17 1 4.9542 -6.1931 -8.5000 18 6 4.0000 -1.4492 -0.0274 19 6 3.4894 -0.7265 1.2214 20 7 2.0204 -0.6939 1.1991 21 6 1.4889 -0.0740 2.4202 22 6 1.7946 -0.9704 3.6218 23 6 1.0939 -0.4155 4.8636 24 6 1.2905 -2.3876 3.3423 25 8 3.2057 -1.0023 3.8455 26 1 -0.3633 0.5130 0.8905 27 1 -0.3633 0.5147 -0.8895 28 1 -0.3633 -1.0276 -0.0005 29 1 1.7022 -0.1930 -2.1394 30 1 1.6544 -1.7418 -1.2632 31 1 3.7508 -0.7797 -3.3133 32 1 5.1284 -1.4227 -2.3875 33 1 3.7661 -3.3854 -1.7234 34 1 2.3885 -2.7423 -2.6493 35 1 3.7397 -2.8404 -4.7264 36 1 5.1170 -3.4833 -3.8001 37 1 2.9277 -8.5775 -5.7944 38 1 5.0899 -1.4491 -0.0275 39 1 3.6363 -2.4767 -0.0272 40 1 3.8756 0.2926 1.2353 41 1 3.8278 -1.2558 2.1122 42 1 1.9555 0.9004 2.5657 43 1 0.4102 0.0504 2.3248 44 1 0.0176 -0.3911 4.6929 45 1 1.3121 -1.0539 5.7197 46 1 1.4532 0.5942 5.0628 47 1 1.8571 -2.8187 2.5169 48 1 1.4213 -3.0021 4.2329 49 1 0.2336 -2.3517 3.0778 50 1 3.5944 -0.1362 4.0295 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189936902.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:08 Heat of formation + Delta-G solvation = -52.351579 kcal Electronic energy + Delta-G solvation = -25376.549320 eV Core-core repulsion = 21950.522079 eV Total energy + Delta-G solvation = -3426.027241 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.193 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.16060 -38.34544 -35.97413 -32.99542 -32.47809 -32.39991 -31.83081 -28.37142 -27.54404 -26.98913 -25.67943 -25.03576 -23.47546 -22.26756 -21.05939 -20.49045 -19.25152 -17.43282 -17.04067 -16.24263 -15.84779 -15.43064 -15.25459 -14.99264 -14.78524 -14.66667 -14.28073 -14.13991 -13.64325 -13.49812 -13.18700 -12.90270 -12.60939 -12.49952 -12.35665 -12.30654 -12.08595 -12.04486 -11.80476 -11.62921 -11.52625 -11.43551 -11.18897 -11.11058 -11.04024 -10.93681 -10.76821 -10.67532 -10.47790 -10.16952 -9.74713 -9.64756 -9.03618 -8.42100 -8.31669 -8.03863 -6.50209 -6.20378 -3.90452 3.23230 3.24073 3.30638 3.61530 3.63704 3.92532 4.02866 4.24884 4.51698 4.63328 4.69313 4.79806 4.93786 5.03096 5.12421 5.15439 5.22199 5.28594 5.30152 5.32981 5.37557 5.40157 5.51575 5.52844 5.59368 5.65020 5.66502 5.70765 5.73078 5.78168 5.84637 5.87527 5.92887 5.95339 6.03085 6.10644 6.13142 6.23277 6.26933 6.40697 6.56689 6.76246 6.91456 6.96847 7.18729 7.19643 7.36297 7.62810 8.39071 9.25816 10.87819 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.022735 B = 0.002439 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.307280 B =11476.604733 C =11801.331002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.083 3.917 3 H 0.043 0.957 4 C 0.058 3.942 5 N -0.539 5.539 6 C 0.058 3.942 7 C -0.133 4.133 8 C -0.108 4.108 9 S -0.137 6.137 10 C -0.515 4.515 11 H 0.072 0.928 12 C 0.070 3.930 13 N -0.870 5.870 14 Si 0.918 3.082 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 C 0.052 3.948 19 C 0.040 3.960 20 N -0.524 5.524 21 C 0.027 3.973 22 C 0.130 3.870 23 C -0.177 4.177 24 C -0.127 4.127 25 O -0.553 6.553 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.267 0.733 38 H 0.075 0.925 39 H 0.049 0.951 40 H 0.029 0.971 41 H 0.117 0.883 42 H 0.031 0.969 43 H 0.087 0.913 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.055 0.945 47 H 0.077 0.923 48 H 0.051 0.949 49 H 0.065 0.935 50 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.031 18.711 18.783 26.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.026 4.026 3 H 0.061 0.939 4 C -0.070 4.070 5 N -0.263 5.263 6 C -0.071 4.071 7 C -0.173 4.173 8 C -0.257 4.257 9 S 0.092 5.908 10 C -0.663 4.663 11 H 0.090 0.910 12 C -0.138 4.138 13 N -0.506 5.506 14 Si 0.744 3.256 15 H -0.203 1.203 16 H -0.208 1.208 17 H -0.197 1.197 18 C -0.077 4.077 19 C -0.087 4.087 20 N -0.249 5.249 21 C -0.101 4.101 22 C 0.090 3.910 23 C -0.235 4.235 24 C -0.184 4.184 25 O -0.359 6.359 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.067 0.933 40 H 0.047 0.953 41 H 0.134 0.866 42 H 0.049 0.951 43 H 0.105 0.895 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.074 0.926 47 H 0.096 0.904 48 H 0.071 0.929 49 H 0.084 0.916 50 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -4.927 17.327 19.331 26.423 hybrid contribution 1.388 0.968 -1.816 2.483 sum -3.539 18.296 17.514 25.573 Atomic orbital electron populations 1.21907 0.94341 1.02853 1.01522 1.21672 0.94870 0.95818 0.90205 0.93901 1.22203 0.87916 1.00204 0.96716 1.62488 1.08270 1.52941 1.02553 1.22249 0.99743 0.93253 0.91864 1.21923 1.01127 0.96196 0.98032 1.23179 1.02215 1.01597 0.98748 1.84640 1.63295 1.08879 1.34034 1.22686 1.32281 1.02748 1.08600 0.91000 1.25019 0.95222 0.95538 0.98068 1.70029 1.34289 1.07465 1.38797 0.86170 0.79096 0.78473 0.81814 1.20277 1.20769 1.19698 1.22210 0.99520 0.96771 0.89158 1.22721 0.86566 0.99635 0.99769 1.62146 1.09090 1.52841 1.00796 1.22880 1.01257 0.95156 0.90848 1.21288 0.80774 0.97010 0.91937 1.22468 1.01418 1.01127 0.98480 1.21592 1.00984 0.93499 1.02327 1.86572 1.21375 1.35210 1.92715 0.92593 0.92030 0.91489 0.90633 0.92934 0.90866 0.90852 0.91543 0.91465 0.92245 0.92243 0.92345 0.90660 0.93299 0.95254 0.86582 0.95068 0.89527 0.91514 0.91534 0.92626 0.90428 0.92944 0.91581 0.78209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 8.90 37.16 0.33 -0.96 16 2 C 0.08 0.86 2.56 -67.65 -0.17 0.69 16 3 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 4 C 0.06 0.71 4.35 -3.77 -0.02 0.69 16 5 N -0.54 -6.96 4.92 -234.46 -1.15 -8.12 16 6 C 0.06 0.81 5.38 -3.82 -0.02 0.79 16 7 C -0.13 -2.24 4.51 -26.73 -0.12 -2.36 16 8 C -0.11 -2.23 5.67 37.16 0.21 -2.02 16 9 S -0.14 -3.66 21.44 -107.50 -2.30 -5.97 16 10 C -0.51 -15.04 9.50 30.94 0.29 -14.74 16 11 H 0.07 2.03 7.80 -52.49 -0.41 1.63 16 12 C 0.07 2.03 5.49 -17.43 -0.10 1.94 16 13 N -0.87 -26.41 13.22 55.49 0.73 -25.67 16 14 Si 0.92 21.84 29.55 -169.99 -5.02 16.82 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 18 C 0.05 0.64 5.27 -3.76 -0.02 0.62 16 19 C 0.04 0.43 5.15 -3.77 -0.02 0.41 16 20 N -0.52 -5.32 3.57 -226.48 -0.81 -6.13 16 21 C 0.03 0.22 4.07 -3.82 -0.02 0.20 16 22 C 0.13 1.01 1.08 -90.62 -0.10 0.91 16 23 C -0.18 -1.05 8.81 37.16 0.33 -0.73 16 24 C -0.13 -1.17 8.50 37.15 0.32 -0.85 16 25 O -0.55 -4.58 9.69 -35.23 -0.34 -4.92 16 26 H 0.06 0.42 6.13 -51.93 -0.32 0.10 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.05 0.74 6.45 -51.93 -0.33 0.40 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 33 H 0.07 1.17 6.62 -51.93 -0.34 0.83 16 34 H 0.07 1.17 6.44 -51.93 -0.33 0.83 16 35 H 0.06 1.22 8.14 -51.91 -0.42 0.79 16 36 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 37 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 38 H 0.08 0.90 8.11 -51.93 -0.42 0.48 16 39 H 0.05 0.70 6.63 -51.93 -0.34 0.35 16 40 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.12 1.24 5.03 -51.92 -0.26 0.98 16 42 H 0.03 0.24 8.11 -51.93 -0.42 -0.18 16 43 H 0.09 0.65 5.69 -51.93 -0.30 0.35 16 44 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 47 H 0.08 0.89 7.63 -51.92 -0.40 0.49 16 48 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.07 0.56 8.14 -51.92 -0.42 0.13 16 50 H 0.37 1.89 9.04 45.56 0.41 2.30 16 LS Contribution 388.89 15.07 5.86 5.86 Total: -1.00 -31.84 388.89 -10.66 -42.50 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -8.52 Total: 1.03 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: 0.90 Total: -15.41 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: -1.23 Total: -39.92 kcal Atomic # 8 Polarization: -4.58 SS G_CDS: -0.34 Total: -4.92 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -2.30 Total: -5.97 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.84 -10.66 -42.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189936902.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.856 kcal (2) G-P(sol) polarization free energy of solvation -31.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds