Wall clock time and date at job start Tue Mar 31 2020 10:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.50983 * 2 1 4 4 C 1.53059 * 109.48874 * 239.94516 * 2 1 3 5 5 N 1.46950 * 109.36182 * 181.63184 * 4 2 1 6 6 C 1.46902 * 110.99566 * 183.19094 * 5 4 2 7 7 C 1.53002 * 109.46848 * 302.24399 * 6 5 4 8 8 C 1.53010 * 109.46987 * 180.02562 * 7 6 5 9 9 S 1.80995 * 109.47218 * 180.02562 * 8 7 6 10 10 C 1.76192 * 100.00138 * 179.97438 * 9 8 7 11 11 H 1.07996 * 120.00046 * 359.97438 * 10 9 8 12 12 C 1.38798 * 120.00151 * 179.97438 * 10 9 8 13 13 N 1.31629 * 119.99939 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00172 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47133 * 90.00037 * 14 12 10 16 16 H 1.48500 * 109.47490 * 209.99966 * 14 12 10 17 17 H 1.48504 * 109.47109 * 330.00305 * 14 12 10 18 18 C 1.46958 * 110.88450 * 59.32430 * 5 4 2 19 19 C 1.53055 * 109.35778 * 300.67496 * 18 5 4 20 20 N 1.46950 * 109.36427 * 58.40531 * 19 18 5 21 21 C 1.46901 * 111.00202 * 176.80946 * 20 19 18 22 22 C 1.53005 * 109.46878 * 293.01536 * 21 20 19 23 23 C 1.53000 * 109.47270 * 186.97479 * 22 21 20 24 24 C 1.52995 * 109.47446 * 306.97818 * 22 21 20 25 25 O 1.42907 * 109.47119 * 66.97564 * 22 21 20 26 26 H 1.08995 * 109.46764 * 299.94494 * 1 2 3 27 27 H 1.09000 * 109.47165 * 59.94596 * 1 2 3 28 28 H 1.08996 * 109.47165 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.48699 * 61.66406 * 4 2 1 30 30 H 1.09001 * 109.50662 * 301.61161 * 4 2 1 31 31 H 1.08999 * 109.47442 * 62.24556 * 6 5 4 32 32 H 1.09004 * 109.47454 * 182.24745 * 6 5 4 33 33 H 1.09003 * 109.47483 * 299.99580 * 7 6 5 34 34 H 1.08995 * 109.47084 * 60.00712 * 7 6 5 35 35 H 1.09003 * 109.46311 * 299.99864 * 8 7 6 36 36 H 1.08995 * 109.47278 * 59.99754 * 8 7 6 37 37 H 0.97006 * 120.00162 * 179.97438 * 13 12 10 38 38 H 1.08993 * 109.48734 * 180.71004 * 18 5 4 39 39 H 1.08994 * 109.50918 * 60.65193 * 18 5 4 40 40 H 1.08990 * 109.48970 * 298.42997 * 19 18 5 41 41 H 1.09009 * 109.50254 * 178.37843 * 19 18 5 42 42 H 1.09003 * 109.46979 * 53.01068 * 21 20 19 43 43 H 1.08997 * 109.47717 * 173.01395 * 21 20 19 44 44 H 1.09000 * 109.46798 * 59.99856 * 23 22 21 45 45 H 1.09001 * 109.47043 * 180.02562 * 23 22 21 46 46 H 1.09002 * 109.47078 * 299.99799 * 23 22 21 47 47 H 1.09007 * 109.47296 * 65.38159 * 24 22 21 48 48 H 1.08994 * 109.47544 * 185.39007 * 24 22 21 49 49 H 1.09008 * 109.46944 * 305.38718 * 24 22 21 50 50 H 0.96698 * 113.99643 * 60.00235 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0407 -0.7226 -1.2489 5 7 3.5096 -0.7553 -1.2265 6 6 4.0410 -1.3752 -2.4477 7 6 3.4758 -2.7899 -2.5890 8 6 4.0297 -3.4358 -3.8607 9 16 3.3605 -5.1091 -4.0283 10 6 4.1399 -5.6014 -5.5298 11 1 4.8026 -4.9202 -6.0428 12 6 3.9022 -6.8647 -6.0533 13 7 3.0941 -7.6948 -5.4284 14 14 4.7281 -7.3864 -7.6456 15 1 6.0308 -8.0302 -7.3397 16 1 3.8558 -8.3507 -8.3629 17 1 4.9542 -6.1931 -8.5000 18 6 4.0000 -1.4492 -0.0274 19 6 3.4894 -0.7265 1.2214 20 7 2.0204 -0.6939 1.1991 21 6 1.4889 -0.0740 2.4202 22 6 1.7946 -0.9704 3.6218 23 6 1.0939 -0.4155 4.8636 24 6 1.2905 -2.3876 3.3423 25 8 3.2057 -1.0023 3.8455 26 1 -0.3633 0.5130 0.8905 27 1 -0.3633 0.5147 -0.8895 28 1 -0.3633 -1.0276 -0.0005 29 1 1.7022 -0.1930 -2.1394 30 1 1.6544 -1.7418 -1.2632 31 1 3.7508 -0.7797 -3.3133 32 1 5.1284 -1.4227 -2.3875 33 1 3.7661 -3.3854 -1.7234 34 1 2.3885 -2.7423 -2.6493 35 1 3.7397 -2.8404 -4.7264 36 1 5.1170 -3.4833 -3.8001 37 1 2.9277 -8.5775 -5.7944 38 1 5.0899 -1.4491 -0.0275 39 1 3.6363 -2.4767 -0.0272 40 1 3.8756 0.2926 1.2353 41 1 3.8278 -1.2558 2.1122 42 1 1.9555 0.9004 2.5657 43 1 0.4102 0.0504 2.3248 44 1 0.0176 -0.3911 4.6929 45 1 1.3121 -1.0539 5.7197 46 1 1.4532 0.5942 5.0628 47 1 1.8571 -2.8187 2.5169 48 1 1.4213 -3.0021 4.2329 49 1 0.2336 -2.3517 3.0778 50 1 3.5944 -0.1362 4.0295 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189936902.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:08 Heat of formation + Delta-G solvation = -74.612909 kcal Electronic energy + Delta-G solvation = -25377.514644 eV Core-core repulsion = 21950.522079 eV Total energy + Delta-G solvation = -3426.992565 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.193 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.99847 -39.16271 -36.91850 -34.63035 -33.94975 -33.32478 -32.84019 -29.33785 -28.16482 -27.97624 -27.72463 -26.10871 -24.55273 -23.41177 -22.07835 -21.15366 -20.29113 -19.53693 -17.72941 -17.13246 -16.91384 -16.77398 -16.34804 -16.27608 -15.97292 -15.81945 -15.64700 -15.25599 -15.03473 -14.38399 -14.23663 -13.91114 -13.64112 -13.49107 -13.34964 -13.17117 -13.12305 -12.99962 -12.94388 -12.83394 -12.76001 -12.61368 -12.52319 -12.41259 -12.33426 -12.08799 -11.98324 -11.61108 -11.57109 -11.47982 -11.28830 -11.15617 -10.43211 -10.37333 -9.30540 -9.11024 -8.69827 -8.38792 -6.15973 1.30040 1.38345 1.47680 1.73664 2.26936 2.88260 2.95224 2.96752 3.29850 3.37828 3.85487 3.86962 3.89061 4.01543 4.09315 4.12178 4.20609 4.21350 4.32806 4.37325 4.44447 4.50883 4.56796 4.59091 4.65652 4.71494 4.76245 4.80380 4.87566 4.89213 4.96024 4.97874 5.01858 5.07436 5.09532 5.11745 5.14426 5.27355 5.28103 5.32680 5.37811 5.40653 5.49780 5.98944 6.03759 6.16499 6.24980 6.27798 6.91040 7.02993 8.70715 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.022735 B = 0.002439 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.307280 B =11476.604733 C =11801.331002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.087 3.913 3 H 0.044 0.956 4 C 0.056 3.944 5 N -0.534 5.534 6 C 0.068 3.932 7 C -0.117 4.117 8 C -0.082 4.082 9 S -0.206 6.206 10 C -0.537 4.537 11 H 0.073 0.927 12 C 0.013 3.987 13 N -0.909 5.909 14 Si 0.996 3.004 15 H -0.267 1.267 16 H -0.273 1.273 17 H -0.262 1.262 18 C 0.051 3.949 19 C 0.051 3.949 20 N -0.536 5.536 21 C 0.030 3.970 22 C 0.133 3.867 23 C -0.170 4.170 24 C -0.126 4.126 25 O -0.568 6.568 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.053 0.947 29 H 0.081 0.919 30 H 0.030 0.970 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.271 0.729 38 H 0.080 0.920 39 H 0.024 0.976 40 H 0.033 0.967 41 H 0.117 0.883 42 H 0.042 0.958 43 H 0.095 0.905 44 H 0.074 0.926 45 H 0.061 0.939 46 H 0.069 0.931 47 H 0.049 0.951 48 H 0.050 0.950 49 H 0.071 0.929 50 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.699 20.691 18.911 28.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.021 4.021 3 H 0.062 0.938 4 C -0.072 4.072 5 N -0.256 5.256 6 C -0.062 4.062 7 C -0.157 4.157 8 C -0.232 4.232 9 S 0.023 5.977 10 C -0.684 4.684 11 H 0.091 0.909 12 C -0.191 4.191 13 N -0.545 5.545 14 Si 0.818 3.182 15 H -0.192 1.192 16 H -0.198 1.198 17 H -0.186 1.186 18 C -0.078 4.078 19 C -0.077 4.077 20 N -0.261 5.261 21 C -0.098 4.098 22 C 0.092 3.908 23 C -0.228 4.228 24 C -0.184 4.184 25 O -0.377 6.377 26 H 0.091 0.909 27 H 0.087 0.913 28 H 0.073 0.927 29 H 0.099 0.901 30 H 0.048 0.952 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.043 0.957 40 H 0.051 0.949 41 H 0.134 0.866 42 H 0.060 0.940 43 H 0.113 0.887 44 H 0.093 0.907 45 H 0.080 0.920 46 H 0.088 0.912 47 H 0.068 0.932 48 H 0.069 0.931 49 H 0.090 0.910 50 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -4.597 19.330 19.481 27.826 hybrid contribution 1.276 0.389 -1.782 2.226 sum -3.322 19.719 17.699 26.704 Atomic orbital electron populations 1.21870 0.93008 1.02412 1.02795 1.21628 0.95867 0.95265 0.89379 0.93839 1.22259 0.87377 0.99270 0.98277 1.62567 1.08750 1.52145 1.02164 1.22168 1.00038 0.91068 0.92919 1.21812 1.00615 0.97745 0.95538 1.23109 1.02025 0.97306 1.00727 1.84699 1.64647 1.14233 1.34155 1.23026 1.32685 1.03469 1.09268 0.90877 1.26110 0.95671 0.95341 1.02012 1.70167 1.35610 1.07981 1.40738 0.84989 0.78116 0.78337 0.76794 1.19237 1.19844 1.18628 1.22249 0.99856 0.95703 0.89957 1.22597 0.87064 0.99402 0.98621 1.62133 1.08743 1.53584 1.01680 1.22917 1.01706 0.95410 0.89729 1.21252 0.80825 0.95914 0.92781 1.22394 1.01687 1.01659 0.97102 1.21568 1.01025 0.94661 1.01101 1.86532 1.21734 1.36644 1.92764 0.90861 0.91258 0.92737 0.90089 0.95208 0.89938 0.90104 0.92671 0.92197 0.91774 0.91912 0.91962 0.90161 0.95722 0.94866 0.86556 0.93985 0.88664 0.90738 0.91981 0.91175 0.93200 0.93129 0.90970 0.76572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 8.90 71.98 0.64 -1.63 16 2 C 0.09 1.70 2.56 44.93 0.12 1.81 16 3 H 0.04 0.86 8.14 -2.39 -0.02 0.85 16 4 C 0.06 1.35 4.35 86.31 0.38 1.73 16 5 N -0.53 -13.33 4.92 -895.71 -4.40 -17.74 16 6 C 0.07 1.83 5.38 86.30 0.46 2.29 16 7 C -0.12 -3.98 4.51 30.60 0.14 -3.85 16 8 C -0.08 -3.42 5.67 71.99 0.41 -3.01 16 9 S -0.21 -11.36 21.44 -56.49 -1.21 -12.57 16 10 C -0.54 -31.75 9.50 67.95 0.65 -31.10 16 11 H 0.07 4.15 7.80 -2.91 -0.02 4.13 16 12 C 0.01 0.78 5.49 84.86 0.47 1.24 16 13 N -0.91 -56.02 13.22 21.65 0.29 -55.74 16 14 Si 1.00 44.67 29.55 68.60 2.03 46.70 16 15 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 16 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 17 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 18 C 0.05 1.25 5.27 86.31 0.45 1.70 16 19 C 0.05 1.04 5.15 86.31 0.44 1.48 16 20 N -0.54 -10.38 3.57 -870.46 -3.11 -13.49 16 21 C 0.03 0.42 4.07 86.30 0.35 0.78 16 22 C 0.13 1.87 1.08 -10.79 -0.01 1.86 16 23 C -0.17 -1.66 8.81 71.98 0.63 -1.02 16 24 C -0.13 -2.30 8.50 71.98 0.61 -1.69 16 25 O -0.57 -8.70 9.69 -148.98 -1.44 -10.14 16 26 H 0.07 0.91 6.13 -2.39 -0.01 0.90 16 27 H 0.07 0.99 8.14 -2.39 -0.02 0.98 16 28 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.03 0.85 6.45 -2.39 -0.02 0.84 16 31 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.08 2.09 8.10 -2.38 -0.02 2.07 16 33 H 0.05 2.01 6.62 -2.39 -0.02 1.99 16 34 H 0.06 2.13 6.44 -2.39 -0.02 2.12 16 35 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 36 H 0.06 2.56 8.14 -2.40 -0.02 2.54 16 37 H 0.27 15.49 8.31 -92.70 -0.77 14.72 16 38 H 0.08 1.87 8.11 -2.39 -0.02 1.86 16 39 H 0.02 0.73 6.63 -2.39 -0.02 0.71 16 40 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.12 2.42 5.03 -2.38 -0.01 2.41 16 42 H 0.04 0.52 8.11 -2.39 -0.02 0.50 16 43 H 0.10 1.18 5.69 -2.39 -0.01 1.17 16 44 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 47 H 0.05 1.18 7.63 -2.38 -0.02 1.16 16 48 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 50 H 0.38 3.21 9.04 -74.06 -0.67 2.54 16 Total: -1.00 -69.51 388.89 -1.89 -71.40 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: 0.23 Total: 20.99 kcal Atomic # 6 Polarization: -35.14 SS G_CDS: 5.74 Total: -29.41 kcal Atomic # 7 Polarization: -79.74 SS G_CDS: -7.22 Total: -86.96 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: -1.44 Total: -10.14 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Atomic # 16 Polarization: -11.36 SS G_CDS: -1.21 Total: -12.57 kcal Total: -69.51 -1.89 -71.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189936902.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.216 kcal (2) G-P(sol) polarization free energy of solvation -69.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds