Wall clock time and date at job start Tue Mar 31 2020 10:53:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.09002 * 109.50983 * 2 1
4 4 C 1.53059 * 109.48874 * 239.94516 * 2 1 3
5 5 N 1.46950 * 109.36182 * 181.63184 * 4 2 1
6 6 C 1.46902 * 110.99566 * 183.19094 * 5 4 2
7 7 C 1.53002 * 109.46848 * 302.24399 * 6 5 4
8 8 C 1.53010 * 109.46987 * 180.02562 * 7 6 5
9 9 S 1.80995 * 109.47218 * 180.02562 * 8 7 6
10 10 C 1.76192 * 100.00138 * 179.97438 * 9 8 7
11 11 H 1.07996 * 120.00046 * 359.97438 * 10 9 8
12 12 C 1.38798 * 120.00151 * 179.97438 * 10 9 8
13 13 N 1.31629 * 119.99939 * 0.02562 * 12 10 9
14 14 Si 1.86801 * 120.00172 * 179.97438 * 12 10 9
15 15 H 1.48502 * 109.47133 * 90.00037 * 14 12 10
16 16 H 1.48500 * 109.47490 * 209.99966 * 14 12 10
17 17 H 1.48504 * 109.47109 * 330.00305 * 14 12 10
18 18 C 1.46958 * 110.88450 * 59.32430 * 5 4 2
19 19 C 1.53055 * 109.35778 * 300.67496 * 18 5 4
20 20 N 1.46950 * 109.36427 * 58.40531 * 19 18 5
21 21 C 1.46901 * 111.00202 * 176.80946 * 20 19 18
22 22 C 1.53005 * 109.46878 * 293.01536 * 21 20 19
23 23 C 1.53000 * 109.47270 * 186.97479 * 22 21 20
24 24 C 1.52995 * 109.47446 * 306.97818 * 22 21 20
25 25 O 1.42907 * 109.47119 * 66.97564 * 22 21 20
26 26 H 1.08995 * 109.46764 * 299.94494 * 1 2 3
27 27 H 1.09000 * 109.47165 * 59.94596 * 1 2 3
28 28 H 1.08996 * 109.47165 * 179.97438 * 1 2 3
29 29 H 1.08999 * 109.48699 * 61.66406 * 4 2 1
30 30 H 1.09001 * 109.50662 * 301.61161 * 4 2 1
31 31 H 1.08999 * 109.47442 * 62.24556 * 6 5 4
32 32 H 1.09004 * 109.47454 * 182.24745 * 6 5 4
33 33 H 1.09003 * 109.47483 * 299.99580 * 7 6 5
34 34 H 1.08995 * 109.47084 * 60.00712 * 7 6 5
35 35 H 1.09003 * 109.46311 * 299.99864 * 8 7 6
36 36 H 1.08995 * 109.47278 * 59.99754 * 8 7 6
37 37 H 0.97006 * 120.00162 * 179.97438 * 13 12 10
38 38 H 1.08993 * 109.48734 * 180.71004 * 18 5 4
39 39 H 1.08994 * 109.50918 * 60.65193 * 18 5 4
40 40 H 1.08990 * 109.48970 * 298.42997 * 19 18 5
41 41 H 1.09009 * 109.50254 * 178.37843 * 19 18 5
42 42 H 1.09003 * 109.46979 * 53.01068 * 21 20 19
43 43 H 1.08997 * 109.47717 * 173.01395 * 21 20 19
44 44 H 1.09000 * 109.46798 * 59.99856 * 23 22 21
45 45 H 1.09001 * 109.47043 * 180.02562 * 23 22 21
46 46 H 1.09002 * 109.47078 * 299.99799 * 23 22 21
47 47 H 1.09007 * 109.47296 * 65.38159 * 24 22 21
48 48 H 1.08994 * 109.47544 * 185.39007 * 24 22 21
49 49 H 1.09008 * 109.46944 * 305.38718 * 24 22 21
50 50 H 0.96698 * 113.99643 * 60.00235 * 25 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8941 1.0274 0.0000
4 6 2.0407 -0.7226 -1.2489
5 7 3.5096 -0.7553 -1.2265
6 6 4.0410 -1.3752 -2.4477
7 6 3.4758 -2.7899 -2.5890
8 6 4.0297 -3.4358 -3.8607
9 16 3.3605 -5.1091 -4.0283
10 6 4.1399 -5.6014 -5.5298
11 1 4.8026 -4.9202 -6.0428
12 6 3.9022 -6.8647 -6.0533
13 7 3.0941 -7.6948 -5.4284
14 14 4.7281 -7.3864 -7.6456
15 1 6.0308 -8.0302 -7.3397
16 1 3.8558 -8.3507 -8.3629
17 1 4.9542 -6.1931 -8.5000
18 6 4.0000 -1.4492 -0.0274
19 6 3.4894 -0.7265 1.2214
20 7 2.0204 -0.6939 1.1991
21 6 1.4889 -0.0740 2.4202
22 6 1.7946 -0.9704 3.6218
23 6 1.0939 -0.4155 4.8636
24 6 1.2905 -2.3876 3.3423
25 8 3.2057 -1.0023 3.8455
26 1 -0.3633 0.5130 0.8905
27 1 -0.3633 0.5147 -0.8895
28 1 -0.3633 -1.0276 -0.0005
29 1 1.7022 -0.1930 -2.1394
30 1 1.6544 -1.7418 -1.2632
31 1 3.7508 -0.7797 -3.3133
32 1 5.1284 -1.4227 -2.3875
33 1 3.7661 -3.3854 -1.7234
34 1 2.3885 -2.7423 -2.6493
35 1 3.7397 -2.8404 -4.7264
36 1 5.1170 -3.4833 -3.8001
37 1 2.9277 -8.5775 -5.7944
38 1 5.0899 -1.4491 -0.0275
39 1 3.6363 -2.4767 -0.0272
40 1 3.8756 0.2926 1.2353
41 1 3.8278 -1.2558 2.1122
42 1 1.9555 0.9004 2.5657
43 1 0.4102 0.0504 2.3248
44 1 0.0176 -0.3911 4.6929
45 1 1.3121 -1.0539 5.7197
46 1 1.4532 0.5942 5.0628
47 1 1.8571 -2.8187 2.5169
48 1 1.4213 -3.0021 4.2329
49 1 0.2336 -2.3517 3.0778
50 1 3.5944 -0.1362 4.0295
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000189936902.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:53:08
Heat of formation + Delta-G solvation = -74.612909 kcal
Electronic energy + Delta-G solvation = -25377.514644 eV
Core-core repulsion = 21950.522079 eV
Total energy + Delta-G solvation = -3426.992565 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 316.193 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-40.99847 -39.16271 -36.91850 -34.63035 -33.94975 -33.32478 -32.84019 -29.33785
-28.16482 -27.97624 -27.72463 -26.10871 -24.55273 -23.41177 -22.07835 -21.15366
-20.29113 -19.53693 -17.72941 -17.13246 -16.91384 -16.77398 -16.34804 -16.27608
-15.97292 -15.81945 -15.64700 -15.25599 -15.03473 -14.38399 -14.23663 -13.91114
-13.64112 -13.49107 -13.34964 -13.17117 -13.12305 -12.99962 -12.94388 -12.83394
-12.76001 -12.61368 -12.52319 -12.41259 -12.33426 -12.08799 -11.98324 -11.61108
-11.57109 -11.47982 -11.28830 -11.15617 -10.43211 -10.37333 -9.30540 -9.11024
-8.69827 -8.38792 -6.15973 1.30040 1.38345 1.47680 1.73664 2.26936
2.88260 2.95224 2.96752 3.29850 3.37828 3.85487 3.86962 3.89061
4.01543 4.09315 4.12178 4.20609 4.21350 4.32806 4.37325 4.44447
4.50883 4.56796 4.59091 4.65652 4.71494 4.76245 4.80380 4.87566
4.89213 4.96024 4.97874 5.01858 5.07436 5.09532 5.11745 5.14426
5.27355 5.28103 5.32680 5.37811 5.40653 5.49780 5.98944 6.03759
6.16499 6.24980 6.27798 6.91040 7.02993 8.70715
Molecular weight = 316.19amu
Principal moments of inertia in cm(-1)
A = 0.022735 B = 0.002439 C = 0.002372
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1231.307280 B =11476.604733 C =11801.331002
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C 0.087 3.913
3 H 0.044 0.956
4 C 0.056 3.944
5 N -0.534 5.534
6 C 0.068 3.932
7 C -0.117 4.117
8 C -0.082 4.082
9 S -0.206 6.206
10 C -0.537 4.537
11 H 0.073 0.927
12 C 0.013 3.987
13 N -0.909 5.909
14 Si 0.996 3.004
15 H -0.267 1.267
16 H -0.273 1.273
17 H -0.262 1.262
18 C 0.051 3.949
19 C 0.051 3.949
20 N -0.536 5.536
21 C 0.030 3.970
22 C 0.133 3.867
23 C -0.170 4.170
24 C -0.126 4.126
25 O -0.568 6.568
26 H 0.073 0.927
27 H 0.068 0.932
28 H 0.053 0.947
29 H 0.081 0.919
30 H 0.030 0.970
31 H 0.082 0.918
32 H 0.081 0.919
33 H 0.055 0.945
34 H 0.059 0.941
35 H 0.063 0.937
36 H 0.062 0.938
37 H 0.271 0.729
38 H 0.080 0.920
39 H 0.024 0.976
40 H 0.033 0.967
41 H 0.117 0.883
42 H 0.042 0.958
43 H 0.095 0.905
44 H 0.074 0.926
45 H 0.061 0.939
46 H 0.069 0.931
47 H 0.049 0.951
48 H 0.050 0.950
49 H 0.071 0.929
50 H 0.385 0.615
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.699 20.691 18.911 28.274
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.021 4.021
3 H 0.062 0.938
4 C -0.072 4.072
5 N -0.256 5.256
6 C -0.062 4.062
7 C -0.157 4.157
8 C -0.232 4.232
9 S 0.023 5.977
10 C -0.684 4.684
11 H 0.091 0.909
12 C -0.191 4.191
13 N -0.545 5.545
14 Si 0.818 3.182
15 H -0.192 1.192
16 H -0.198 1.198
17 H -0.186 1.186
18 C -0.078 4.078
19 C -0.077 4.077
20 N -0.261 5.261
21 C -0.098 4.098
22 C 0.092 3.908
23 C -0.228 4.228
24 C -0.184 4.184
25 O -0.377 6.377
26 H 0.091 0.909
27 H 0.087 0.913
28 H 0.073 0.927
29 H 0.099 0.901
30 H 0.048 0.952
31 H 0.101 0.899
32 H 0.099 0.901
33 H 0.073 0.927
34 H 0.078 0.922
35 H 0.082 0.918
36 H 0.081 0.919
37 H 0.080 0.920
38 H 0.098 0.902
39 H 0.043 0.957
40 H 0.051 0.949
41 H 0.134 0.866
42 H 0.060 0.940
43 H 0.113 0.887
44 H 0.093 0.907
45 H 0.080 0.920
46 H 0.088 0.912
47 H 0.068 0.932
48 H 0.069 0.931
49 H 0.090 0.910
50 H 0.234 0.766
Dipole moment (debyes) X Y Z Total
from point charges -4.597 19.330 19.481 27.826
hybrid contribution 1.276 0.389 -1.782 2.226
sum -3.322 19.719 17.699 26.704
Atomic orbital electron populations
1.21870 0.93008 1.02412 1.02795 1.21628 0.95867 0.95265 0.89379
0.93839 1.22259 0.87377 0.99270 0.98277 1.62567 1.08750 1.52145
1.02164 1.22168 1.00038 0.91068 0.92919 1.21812 1.00615 0.97745
0.95538 1.23109 1.02025 0.97306 1.00727 1.84699 1.64647 1.14233
1.34155 1.23026 1.32685 1.03469 1.09268 0.90877 1.26110 0.95671
0.95341 1.02012 1.70167 1.35610 1.07981 1.40738 0.84989 0.78116
0.78337 0.76794 1.19237 1.19844 1.18628 1.22249 0.99856 0.95703
0.89957 1.22597 0.87064 0.99402 0.98621 1.62133 1.08743 1.53584
1.01680 1.22917 1.01706 0.95410 0.89729 1.21252 0.80825 0.95914
0.92781 1.22394 1.01687 1.01659 0.97102 1.21568 1.01025 0.94661
1.01101 1.86532 1.21734 1.36644 1.92764 0.90861 0.91258 0.92737
0.90089 0.95208 0.89938 0.90104 0.92671 0.92197 0.91774 0.91912
0.91962 0.90161 0.95722 0.94866 0.86556 0.93985 0.88664 0.90738
0.91981 0.91175 0.93200 0.93129 0.90970 0.76572
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.27 8.90 71.98 0.64 -1.63 16
2 C 0.09 1.70 2.56 44.93 0.12 1.81 16
3 H 0.04 0.86 8.14 -2.39 -0.02 0.85 16
4 C 0.06 1.35 4.35 86.31 0.38 1.73 16
5 N -0.53 -13.33 4.92 -895.71 -4.40 -17.74 16
6 C 0.07 1.83 5.38 86.30 0.46 2.29 16
7 C -0.12 -3.98 4.51 30.60 0.14 -3.85 16
8 C -0.08 -3.42 5.67 71.99 0.41 -3.01 16
9 S -0.21 -11.36 21.44 -56.49 -1.21 -12.57 16
10 C -0.54 -31.75 9.50 67.95 0.65 -31.10 16
11 H 0.07 4.15 7.80 -2.91 -0.02 4.13 16
12 C 0.01 0.78 5.49 84.86 0.47 1.24 16
13 N -0.91 -56.02 13.22 21.65 0.29 -55.74 16
14 Si 1.00 44.67 29.55 68.60 2.03 46.70 16
15 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16
16 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16
17 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16
18 C 0.05 1.25 5.27 86.31 0.45 1.70 16
19 C 0.05 1.04 5.15 86.31 0.44 1.48 16
20 N -0.54 -10.38 3.57 -870.46 -3.11 -13.49 16
21 C 0.03 0.42 4.07 86.30 0.35 0.78 16
22 C 0.13 1.87 1.08 -10.79 -0.01 1.86 16
23 C -0.17 -1.66 8.81 71.98 0.63 -1.02 16
24 C -0.13 -2.30 8.50 71.98 0.61 -1.69 16
25 O -0.57 -8.70 9.69 -148.98 -1.44 -10.14 16
26 H 0.07 0.91 6.13 -2.39 -0.01 0.90 16
27 H 0.07 0.99 8.14 -2.39 -0.02 0.98 16
28 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16
29 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16
30 H 0.03 0.85 6.45 -2.39 -0.02 0.84 16
31 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16
32 H 0.08 2.09 8.10 -2.38 -0.02 2.07 16
33 H 0.05 2.01 6.62 -2.39 -0.02 1.99 16
34 H 0.06 2.13 6.44 -2.39 -0.02 2.12 16
35 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16
36 H 0.06 2.56 8.14 -2.40 -0.02 2.54 16
37 H 0.27 15.49 8.31 -92.70 -0.77 14.72 16
38 H 0.08 1.87 8.11 -2.39 -0.02 1.86 16
39 H 0.02 0.73 6.63 -2.39 -0.02 0.71 16
40 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16
41 H 0.12 2.42 5.03 -2.38 -0.01 2.41 16
42 H 0.04 0.52 8.11 -2.39 -0.02 0.50 16
43 H 0.10 1.18 5.69 -2.39 -0.01 1.17 16
44 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16
45 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16
46 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16
47 H 0.05 1.18 7.63 -2.38 -0.02 1.16 16
48 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16
49 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16
50 H 0.38 3.21 9.04 -74.06 -0.67 2.54 16
Total: -1.00 -69.51 388.89 -1.89 -71.40
By element:
Atomic # 1 Polarization: 20.76 SS G_CDS: 0.23 Total: 20.99 kcal
Atomic # 6 Polarization: -35.14 SS G_CDS: 5.74 Total: -29.41 kcal
Atomic # 7 Polarization: -79.74 SS G_CDS: -7.22 Total: -86.96 kcal
Atomic # 8 Polarization: -8.70 SS G_CDS: -1.44 Total: -10.14 kcal
Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal
Atomic # 16 Polarization: -11.36 SS G_CDS: -1.21 Total: -12.57 kcal
Total: -69.51 -1.89 -71.40 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000189936902.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -3.216 kcal
(2) G-P(sol) polarization free energy of solvation -69.509 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.726 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.887 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.397 kcal
(6) G-S(sol) free energy of system = (1) + (5) -74.613 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds