Wall clock time and date at job start Tue Mar 31 2020 10:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.48548 * 2 1 4 4 C 1.53042 * 109.49009 * 120.07191 * 2 1 3 5 5 N 1.46960 * 109.36198 * 178.36832 * 4 2 1 6 6 C 1.46907 * 111.00059 * 176.80893 * 5 4 2 7 7 C 1.52996 * 109.47276 * 190.00017 * 6 5 4 8 8 C 1.52999 * 109.47023 * 180.02562 * 7 6 5 9 9 S 1.81002 * 109.46919 * 179.97438 * 8 7 6 10 10 C 1.76200 * 99.99913 * 179.97438 * 9 8 7 11 11 H 1.08001 * 119.99829 * 0.02562 * 10 9 8 12 12 C 1.38804 * 119.99859 * 180.02562 * 10 9 8 13 13 N 1.31627 * 119.99840 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99739 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.46978 * 60.00359 * 14 12 10 16 16 H 1.48504 * 109.47027 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47458 * 300.00146 * 14 12 10 18 18 C 1.46952 * 110.88034 * 300.67514 * 5 4 2 19 19 C 1.53050 * 109.36460 * 59.32496 * 18 5 4 20 20 N 1.46960 * 109.36092 * 301.59654 * 19 18 5 21 21 C 1.46899 * 111.00182 * 183.18701 * 20 19 18 22 22 C 1.53004 * 109.47041 * 52.49199 * 21 20 19 23 23 C 1.52999 * 109.47369 * 172.07030 * 22 21 20 24 24 C 1.52999 * 109.47036 * 52.07283 * 22 21 20 25 25 O 1.42896 * 109.47060 * 292.07532 * 22 21 20 26 26 H 1.09001 * 109.46921 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46875 * 300.03563 * 1 2 3 28 28 H 1.09000 * 109.47466 * 60.03661 * 1 2 3 29 29 H 1.09001 * 109.48964 * 298.32696 * 4 2 1 30 30 H 1.08999 * 109.49366 * 58.40245 * 4 2 1 31 31 H 1.09002 * 109.46935 * 309.99976 * 6 5 4 32 32 H 1.09000 * 109.47001 * 69.99547 * 6 5 4 33 33 H 1.09002 * 109.47105 * 299.99854 * 7 6 5 34 34 H 1.09000 * 109.47489 * 59.99829 * 7 6 5 35 35 H 1.08997 * 109.47322 * 299.99525 * 8 7 6 36 36 H 1.09000 * 109.47456 * 60.00049 * 8 7 6 37 37 H 0.97001 * 119.99562 * 179.97438 * 13 12 10 38 38 H 1.09000 * 109.49137 * 179.28638 * 18 5 4 39 39 H 1.08997 * 109.49363 * 299.33202 * 18 5 4 40 40 H 1.09001 * 109.49187 * 181.63720 * 19 18 5 41 41 H 1.08999 * 109.49249 * 61.56106 * 19 18 5 42 42 H 1.08999 * 109.47075 * 292.49921 * 21 20 19 43 43 H 1.08994 * 109.47630 * 172.49487 * 21 20 19 44 44 H 1.09001 * 109.47352 * 179.97438 * 23 22 21 45 45 H 1.08999 * 109.47228 * 300.00753 * 23 22 21 46 46 H 1.08998 * 109.46786 * 60.00355 * 23 22 21 47 47 H 1.09005 * 109.47084 * 300.00479 * 24 22 21 48 48 H 1.09003 * 109.47175 * 59.99794 * 24 22 21 49 49 H 1.08996 * 109.47508 * 180.02562 * 24 22 21 50 50 H 0.96697 * 113.99947 * 299.99112 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0406 -0.7229 1.2485 5 7 3.5097 -0.7555 1.2261 6 6 4.0413 -1.3758 2.4471 7 6 5.5562 -1.1702 2.5056 8 6 6.1099 -1.8168 3.7770 9 16 7.9023 -1.5742 3.8458 10 6 8.2637 -2.3925 5.3638 11 1 7.4678 -2.8474 5.9348 12 6 9.5712 -2.4523 5.8258 13 7 10.5410 -1.8974 5.1301 14 14 9.9544 -3.3204 7.4348 15 1 9.5420 -4.7438 7.3397 16 1 11.4130 -3.2440 7.7033 17 1 9.2129 -2.6631 8.5408 18 6 3.9999 -1.4491 0.0268 19 6 3.4893 -0.7261 -1.2218 20 7 2.0202 -0.6935 -1.1994 21 6 1.4886 -0.0733 -2.4203 22 6 2.0920 -0.7616 -3.6463 23 6 1.3953 -0.2545 -4.9105 24 6 1.8975 -2.2747 -3.5290 25 8 3.4880 -0.4652 -3.7201 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5144 0.8897 28 1 -0.3634 0.5132 -0.8903 29 1 1.7023 -0.1935 2.1392 30 1 1.6545 -1.7421 1.2622 31 1 3.5781 -0.9152 3.3198 32 1 3.8194 -2.4429 2.4388 33 1 6.0193 -1.6308 1.6329 34 1 5.7781 -0.1031 2.5139 35 1 5.6469 -1.3566 4.6498 36 1 5.8881 -2.8839 3.7682 37 1 11.4547 -1.9389 5.4531 38 1 5.0899 -1.4490 0.0267 39 1 3.6363 -2.4766 0.0267 40 1 3.8276 -1.2556 -2.1125 41 1 3.8754 0.2931 -1.2355 42 1 1.7489 0.9851 -2.4331 43 1 0.4042 -0.1810 -2.4401 44 1 1.8255 -0.7445 -5.7839 45 1 0.3305 -0.4805 -4.8541 46 1 1.5339 0.8234 -4.9941 47 1 2.3938 -2.6361 -2.6282 48 1 0.8327 -2.5008 -3.4726 49 1 2.3277 -2.7652 -4.4021 50 1 3.6862 0.4781 -3.7963 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189936921.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:11 Heat of formation + Delta-G solvation = -51.198438 kcal Electronic energy + Delta-G solvation = -25096.561622 eV Core-core repulsion = 21670.584384 eV Total energy + Delta-G solvation = -3425.977238 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.193 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.25455 -38.28414 -35.89589 -33.13630 -32.45727 -32.37012 -32.07649 -28.48831 -27.65831 -27.00008 -25.68136 -25.04895 -23.34202 -22.38079 -20.61811 -20.41557 -19.72209 -17.43327 -17.19025 -16.23591 -15.86498 -15.52259 -15.31157 -14.99568 -14.81728 -14.76508 -14.31247 -13.89247 -13.80111 -13.61009 -13.22105 -12.96699 -12.70933 -12.49369 -12.44853 -12.26441 -12.16991 -12.04286 -11.84223 -11.75675 -11.55128 -11.50938 -11.16149 -11.12717 -11.02221 -10.96070 -10.78012 -10.67663 -10.52425 -10.15860 -9.71126 -9.46751 -9.01490 -8.49392 -8.25718 -8.22311 -6.48048 -6.18825 -3.88645 3.24288 3.25758 3.30201 3.57296 3.61555 3.85745 4.00031 4.26708 4.41399 4.57785 4.62307 4.72365 4.90407 4.98349 5.07138 5.16821 5.18260 5.24814 5.27358 5.30954 5.34734 5.40108 5.46641 5.49002 5.50927 5.56287 5.59534 5.67094 5.71610 5.75226 5.79578 5.81600 5.85056 5.90097 5.99313 6.06197 6.11089 6.16406 6.22519 6.42641 6.65920 6.80159 6.88606 6.91415 7.18523 7.19608 7.32580 7.63914 8.40266 9.27160 10.89310 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.026205 B = 0.002220 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.229909 B =12607.822628 C =13285.468450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.082 3.918 3 H 0.047 0.953 4 C 0.064 3.936 5 N -0.540 5.540 6 C 0.061 3.939 7 C -0.093 4.093 8 C -0.112 4.112 9 S -0.133 6.133 10 C -0.516 4.516 11 H 0.071 0.929 12 C 0.070 3.930 13 N -0.870 5.870 14 Si 0.918 3.082 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 C 0.052 3.948 19 C 0.042 3.958 20 N -0.528 5.528 21 C 0.031 3.969 22 C 0.126 3.874 23 C -0.176 4.176 24 C -0.131 4.131 25 O -0.553 6.553 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.039 0.961 31 H 0.071 0.929 32 H 0.032 0.968 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.267 0.733 38 H 0.085 0.915 39 H 0.037 0.963 40 H 0.120 0.880 41 H 0.034 0.966 42 H 0.032 0.968 43 H 0.083 0.917 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.056 0.944 47 H 0.077 0.923 48 H 0.065 0.935 49 H 0.054 0.946 50 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.518 4.180 -18.199 29.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.027 4.027 3 H 0.065 0.935 4 C -0.064 4.064 5 N -0.265 5.265 6 C -0.068 4.068 7 C -0.131 4.131 8 C -0.261 4.261 9 S 0.096 5.904 10 C -0.664 4.664 11 H 0.089 0.911 12 C -0.138 4.138 13 N -0.506 5.506 14 Si 0.744 3.256 15 H -0.200 1.200 16 H -0.208 1.208 17 H -0.200 1.200 18 C -0.076 4.076 19 C -0.085 4.085 20 N -0.253 5.253 21 C -0.098 4.098 22 C 0.086 3.914 23 C -0.234 4.234 24 C -0.188 4.188 25 O -0.360 6.360 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.050 0.950 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.103 0.897 39 H 0.055 0.945 40 H 0.138 0.862 41 H 0.053 0.947 42 H 0.051 0.949 43 H 0.102 0.898 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.075 0.925 47 H 0.096 0.904 48 H 0.084 0.916 49 H 0.073 0.927 50 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -21.566 4.094 -18.871 28.948 hybrid contribution -0.665 -0.441 1.949 2.106 sum -22.231 3.653 -16.923 28.177 Atomic orbital electron populations 1.21866 0.94406 1.02476 1.01646 1.21675 0.94731 0.96132 0.90116 0.93515 1.22133 0.87990 0.99304 0.96992 1.62175 1.07487 1.54176 1.02646 1.22157 0.96328 0.96663 0.91630 1.21266 0.92711 1.01814 0.97334 1.23229 1.02092 1.01721 0.99064 1.84626 0.98199 1.75165 1.32441 1.22654 0.95899 1.40806 1.07063 0.91066 1.25016 0.95269 0.95522 0.98029 1.70017 1.00388 1.42181 1.37971 0.86229 0.77336 0.79808 0.82180 1.19965 1.20835 1.19964 1.22299 1.00531 0.95641 0.89170 1.22768 0.86114 1.00317 0.99261 1.62264 1.09489 1.52741 1.00823 1.22819 1.00540 0.95902 0.90505 1.21278 0.81011 0.96752 0.92403 1.22451 1.01364 1.01333 0.98268 1.21688 1.01949 0.92131 1.03043 1.86596 1.23586 1.29953 1.95862 0.91836 0.92113 0.92600 0.90637 0.94274 0.91046 0.94991 0.91680 0.90911 0.92216 0.92397 0.92293 0.89708 0.94464 0.86228 0.94720 0.94933 0.89839 0.91507 0.91542 0.92493 0.90447 0.91581 0.92683 0.77910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 8.86 37.16 0.33 -0.77 16 2 C 0.08 0.80 2.56 -67.66 -0.17 0.62 16 3 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 4 C 0.06 0.72 4.89 -3.77 -0.02 0.70 16 5 N -0.54 -7.11 4.71 -234.47 -1.10 -8.21 16 6 C 0.06 0.88 4.96 -3.82 -0.02 0.86 16 7 C -0.09 -1.59 5.15 -26.73 -0.14 -1.73 16 8 C -0.11 -2.33 5.67 37.16 0.21 -2.12 16 9 S -0.13 -3.56 21.44 -107.50 -2.30 -5.86 16 10 C -0.52 -15.09 9.50 30.94 0.29 -14.79 16 11 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 12 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 13 N -0.87 -26.39 13.22 55.49 0.73 -25.66 16 14 Si 0.92 21.85 29.55 -169.99 -5.02 16.83 16 15 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 18 C 0.05 0.66 5.41 -3.77 -0.02 0.64 16 19 C 0.04 0.46 4.08 -3.77 -0.02 0.45 16 20 N -0.53 -5.02 3.77 -226.49 -0.85 -5.87 16 21 C 0.03 0.23 3.87 -3.82 -0.01 0.21 16 22 C 0.13 0.90 0.98 -90.62 -0.09 0.81 16 23 C -0.18 -0.96 8.81 37.16 0.33 -0.63 16 24 C -0.13 -1.04 8.39 37.16 0.31 -0.73 16 25 O -0.55 -4.46 9.50 -35.23 -0.33 -4.80 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.37 6.44 -51.93 -0.33 0.04 16 29 H 0.08 0.80 8.07 -51.93 -0.42 0.38 16 30 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.99 8.03 -51.93 -0.42 0.58 16 32 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 33 H 0.06 1.13 6.49 -51.93 -0.34 0.80 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 36 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 37 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 38 H 0.08 1.15 6.34 -51.93 -0.33 0.82 16 39 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.12 1.32 4.26 -51.93 -0.22 1.09 16 41 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.03 0.25 8.14 -51.93 -0.42 -0.18 16 43 H 0.08 0.57 6.46 -51.93 -0.34 0.23 16 44 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 47 H 0.08 0.75 6.35 -51.93 -0.33 0.42 16 48 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 49 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.37 2.00 9.04 45.56 0.41 2.41 16 LS Contribution 389.98 15.07 5.88 5.88 Total: -1.00 -31.73 389.98 -10.74 -42.47 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -8.62 Total: -0.24 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: 0.89 Total: -14.53 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: -1.22 Total: -39.75 kcal Atomic # 8 Polarization: -4.46 SS G_CDS: -0.33 Total: -4.80 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -2.30 Total: -5.86 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.73 -10.74 -42.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189936921.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.728 kcal (2) G-P(sol) polarization free energy of solvation -31.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds