Wall clock time and date at job start Tue Mar 31 2020 10:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.48548 * 2 1 4 4 C 1.53042 * 109.49009 * 120.07191 * 2 1 3 5 5 N 1.46960 * 109.36198 * 178.36832 * 4 2 1 6 6 C 1.46907 * 111.00059 * 176.80893 * 5 4 2 7 7 C 1.52996 * 109.47276 * 190.00017 * 6 5 4 8 8 C 1.52999 * 109.47023 * 180.02562 * 7 6 5 9 9 S 1.81002 * 109.46919 * 179.97438 * 8 7 6 10 10 C 1.76200 * 99.99913 * 179.97438 * 9 8 7 11 11 H 1.08001 * 119.99829 * 0.02562 * 10 9 8 12 12 C 1.38804 * 119.99859 * 180.02562 * 10 9 8 13 13 N 1.31627 * 119.99840 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99739 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.46978 * 60.00359 * 14 12 10 16 16 H 1.48504 * 109.47027 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47458 * 300.00146 * 14 12 10 18 18 C 1.46952 * 110.88034 * 300.67514 * 5 4 2 19 19 C 1.53050 * 109.36460 * 59.32496 * 18 5 4 20 20 N 1.46960 * 109.36092 * 301.59654 * 19 18 5 21 21 C 1.46899 * 111.00182 * 183.18701 * 20 19 18 22 22 C 1.53004 * 109.47041 * 52.49199 * 21 20 19 23 23 C 1.52999 * 109.47369 * 172.07030 * 22 21 20 24 24 C 1.52999 * 109.47036 * 52.07283 * 22 21 20 25 25 O 1.42896 * 109.47060 * 292.07532 * 22 21 20 26 26 H 1.09001 * 109.46921 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46875 * 300.03563 * 1 2 3 28 28 H 1.09000 * 109.47466 * 60.03661 * 1 2 3 29 29 H 1.09001 * 109.48964 * 298.32696 * 4 2 1 30 30 H 1.08999 * 109.49366 * 58.40245 * 4 2 1 31 31 H 1.09002 * 109.46935 * 309.99976 * 6 5 4 32 32 H 1.09000 * 109.47001 * 69.99547 * 6 5 4 33 33 H 1.09002 * 109.47105 * 299.99854 * 7 6 5 34 34 H 1.09000 * 109.47489 * 59.99829 * 7 6 5 35 35 H 1.08997 * 109.47322 * 299.99525 * 8 7 6 36 36 H 1.09000 * 109.47456 * 60.00049 * 8 7 6 37 37 H 0.97001 * 119.99562 * 179.97438 * 13 12 10 38 38 H 1.09000 * 109.49137 * 179.28638 * 18 5 4 39 39 H 1.08997 * 109.49363 * 299.33202 * 18 5 4 40 40 H 1.09001 * 109.49187 * 181.63720 * 19 18 5 41 41 H 1.08999 * 109.49249 * 61.56106 * 19 18 5 42 42 H 1.08999 * 109.47075 * 292.49921 * 21 20 19 43 43 H 1.08994 * 109.47630 * 172.49487 * 21 20 19 44 44 H 1.09001 * 109.47352 * 179.97438 * 23 22 21 45 45 H 1.08999 * 109.47228 * 300.00753 * 23 22 21 46 46 H 1.08998 * 109.46786 * 60.00355 * 23 22 21 47 47 H 1.09005 * 109.47084 * 300.00479 * 24 22 21 48 48 H 1.09003 * 109.47175 * 59.99794 * 24 22 21 49 49 H 1.08996 * 109.47508 * 180.02562 * 24 22 21 50 50 H 0.96697 * 113.99947 * 299.99112 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0406 -0.7229 1.2485 5 7 3.5097 -0.7555 1.2261 6 6 4.0413 -1.3758 2.4471 7 6 5.5562 -1.1702 2.5056 8 6 6.1099 -1.8168 3.7770 9 16 7.9023 -1.5742 3.8458 10 6 8.2637 -2.3925 5.3638 11 1 7.4678 -2.8474 5.9348 12 6 9.5712 -2.4523 5.8258 13 7 10.5410 -1.8974 5.1301 14 14 9.9544 -3.3204 7.4348 15 1 9.5420 -4.7438 7.3397 16 1 11.4130 -3.2440 7.7033 17 1 9.2129 -2.6631 8.5408 18 6 3.9999 -1.4491 0.0268 19 6 3.4893 -0.7261 -1.2218 20 7 2.0202 -0.6935 -1.1994 21 6 1.4886 -0.0733 -2.4203 22 6 2.0920 -0.7616 -3.6463 23 6 1.3953 -0.2545 -4.9105 24 6 1.8975 -2.2747 -3.5290 25 8 3.4880 -0.4652 -3.7201 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5144 0.8897 28 1 -0.3634 0.5132 -0.8903 29 1 1.7023 -0.1935 2.1392 30 1 1.6545 -1.7421 1.2622 31 1 3.5781 -0.9152 3.3198 32 1 3.8194 -2.4429 2.4388 33 1 6.0193 -1.6308 1.6329 34 1 5.7781 -0.1031 2.5139 35 1 5.6469 -1.3566 4.6498 36 1 5.8881 -2.8839 3.7682 37 1 11.4547 -1.9389 5.4531 38 1 5.0899 -1.4490 0.0267 39 1 3.6363 -2.4766 0.0267 40 1 3.8276 -1.2556 -2.1125 41 1 3.8754 0.2931 -1.2355 42 1 1.7489 0.9851 -2.4331 43 1 0.4042 -0.1810 -2.4401 44 1 1.8255 -0.7445 -5.7839 45 1 0.3305 -0.4805 -4.8541 46 1 1.5339 0.8234 -4.9941 47 1 2.3938 -2.6361 -2.6282 48 1 0.8327 -2.5008 -3.4726 49 1 2.3277 -2.7652 -4.4021 50 1 3.6862 0.4781 -3.7963 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189936921.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:10 Heat of formation + Delta-G solvation = -73.217160 kcal Electronic energy + Delta-G solvation = -25097.516425 eV Core-core repulsion = 21670.584384 eV Total energy + Delta-G solvation = -3426.932041 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.02780 -39.08025 -36.84784 -34.61922 -34.11485 -33.32709 -32.91897 -29.40325 -28.20476 -28.05008 -27.61834 -26.15809 -24.26871 -23.50224 -21.65966 -21.21965 -20.56949 -19.55674 -17.86833 -17.07663 -16.89798 -16.71646 -16.41412 -16.36083 -16.06036 -15.91669 -15.52175 -15.05827 -14.94356 -14.65998 -14.29002 -13.88384 -13.63446 -13.45066 -13.31631 -13.16273 -13.02999 -13.00334 -12.91162 -12.86271 -12.68635 -12.65730 -12.53241 -12.42684 -12.36924 -12.07076 -11.96445 -11.75147 -11.59595 -11.46142 -11.16040 -11.12098 -10.37949 -10.32218 -9.36776 -9.18432 -8.67505 -8.37279 -6.14044 1.30735 1.40734 1.47389 1.73369 2.28156 2.85933 2.92905 2.96584 3.31990 3.34814 3.80352 3.86473 3.92910 4.02224 4.07013 4.14378 4.15780 4.30097 4.34097 4.39256 4.43550 4.50426 4.56205 4.58935 4.69162 4.71204 4.78989 4.79652 4.80788 4.85566 4.95928 4.96135 5.02928 5.05833 5.07911 5.11432 5.17673 5.25922 5.29312 5.35081 5.38961 5.39373 5.49025 5.99381 6.04223 6.17701 6.22780 6.25748 6.86155 7.04352 8.71978 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.026205 B = 0.002220 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.229909 B =12607.822628 C =13285.468450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.084 3.916 3 H 0.036 0.964 4 C 0.064 3.936 5 N -0.548 5.548 6 C 0.072 3.928 7 C -0.079 4.079 8 C -0.086 4.086 9 S -0.199 6.199 10 C -0.539 4.539 11 H 0.073 0.927 12 C 0.014 3.986 13 N -0.907 5.907 14 Si 0.995 3.005 15 H -0.264 1.264 16 H -0.274 1.274 17 H -0.264 1.264 18 C 0.052 3.948 19 C 0.055 3.945 20 N -0.531 5.531 21 C 0.033 3.967 22 C 0.126 3.874 23 C -0.170 4.170 24 C -0.130 4.130 25 O -0.570 6.570 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.036 0.964 31 H 0.081 0.919 32 H 0.033 0.967 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.272 0.728 38 H 0.070 0.930 39 H 0.031 0.969 40 H 0.119 0.881 41 H 0.024 0.976 42 H 0.036 0.964 43 H 0.097 0.903 44 H 0.061 0.939 45 H 0.076 0.924 46 H 0.065 0.935 47 H 0.056 0.944 48 H 0.077 0.923 49 H 0.051 0.949 50 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.627 4.148 -18.087 30.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.025 4.025 3 H 0.054 0.946 4 C -0.064 4.064 5 N -0.272 5.272 6 C -0.057 4.057 7 C -0.118 4.118 8 C -0.235 4.235 9 S 0.030 5.970 10 C -0.687 4.687 11 H 0.091 0.909 12 C -0.191 4.191 13 N -0.544 5.544 14 Si 0.817 3.183 15 H -0.189 1.189 16 H -0.199 1.199 17 H -0.189 1.189 18 C -0.076 4.076 19 C -0.072 4.072 20 N -0.256 5.256 21 C -0.095 4.095 22 C 0.086 3.914 23 C -0.228 4.228 24 C -0.187 4.187 25 O -0.379 6.379 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.102 0.898 30 H 0.054 0.946 31 H 0.099 0.901 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.049 0.951 40 H 0.137 0.863 41 H 0.043 0.957 42 H 0.054 0.946 43 H 0.115 0.885 44 H 0.081 0.919 45 H 0.095 0.905 46 H 0.084 0.916 47 H 0.075 0.925 48 H 0.096 0.904 49 H 0.070 0.930 50 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -23.695 4.076 -18.777 30.506 hybrid contribution -0.060 -0.408 1.841 1.886 sum -23.755 3.668 -16.936 29.404 Atomic orbital electron populations 1.21811 0.92352 1.02720 1.02742 1.21681 0.96252 0.95104 0.89472 0.94618 1.22221 0.86374 0.99495 0.98337 1.62159 1.09018 1.53950 1.02089 1.21967 0.93959 0.97007 0.92806 1.21127 0.94810 1.00693 0.95195 1.23138 0.97121 1.02232 1.01035 1.84662 1.04255 1.75548 1.32562 1.23007 0.96581 1.41333 1.07733 0.90906 1.26103 0.94882 0.96060 1.02080 1.70156 1.00905 1.43334 1.39986 0.85049 0.77508 0.78701 0.77044 1.18918 1.19912 1.18866 1.22277 0.99712 0.95615 0.90000 1.22594 0.87237 0.99285 0.98123 1.62274 1.08372 1.53218 1.01739 1.22875 1.01166 0.95893 0.89520 1.21311 0.80788 0.96173 0.93135 1.22382 1.01691 1.01803 0.96918 1.21672 1.02397 0.92831 1.01805 1.86557 1.24338 1.31110 1.95899 0.91942 0.91251 0.91340 0.89800 0.94563 0.90096 0.94843 0.92208 0.91753 0.91778 0.92163 0.91951 0.91208 0.95089 0.86311 0.95740 0.94604 0.88488 0.91942 0.90459 0.91552 0.92527 0.90436 0.93002 0.76674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 8.86 71.98 0.64 -1.10 16 2 C 0.08 1.49 2.56 44.92 0.11 1.60 16 3 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 4 C 0.06 1.34 4.89 86.31 0.42 1.76 16 5 N -0.55 -14.08 4.71 -895.73 -4.22 -18.30 16 6 C 0.07 2.01 4.96 86.30 0.43 2.44 16 7 C -0.08 -2.74 5.15 30.59 0.16 -2.58 16 8 C -0.09 -3.59 5.67 71.98 0.41 -3.18 16 9 S -0.20 -10.94 21.44 -56.49 -1.21 -12.16 16 10 C -0.54 -31.84 9.50 67.96 0.65 -31.20 16 11 H 0.07 4.13 7.80 -2.91 -0.02 4.11 16 12 C 0.01 0.79 5.49 84.86 0.47 1.26 16 13 N -0.91 -55.82 13.22 21.65 0.29 -55.53 16 14 Si 1.00 44.62 29.55 68.60 2.03 46.64 16 15 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 16 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 17 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 18 C 0.05 1.33 5.41 86.31 0.47 1.80 16 19 C 0.06 1.19 4.08 86.31 0.35 1.54 16 20 N -0.53 -9.45 3.77 -870.50 -3.28 -12.73 16 21 C 0.03 0.43 3.87 86.30 0.33 0.77 16 22 C 0.13 1.61 0.98 -10.79 -0.01 1.60 16 23 C -0.17 -1.50 8.81 71.98 0.63 -0.86 16 24 C -0.13 -1.93 8.39 71.98 0.60 -1.33 16 25 O -0.57 -8.79 9.50 -148.98 -1.41 -10.21 16 26 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.07 0.70 6.44 -2.39 -0.02 0.68 16 29 H 0.08 1.61 8.07 -2.39 -0.02 1.59 16 30 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.08 2.12 8.03 -2.39 -0.02 2.10 16 32 H 0.03 0.93 8.12 -2.39 -0.02 0.91 16 33 H 0.06 2.13 6.49 -2.39 -0.02 2.11 16 34 H 0.06 2.33 8.14 -2.39 -0.02 2.32 16 35 H 0.06 2.62 8.14 -2.40 -0.02 2.60 16 36 H 0.06 2.48 8.14 -2.40 -0.02 2.46 16 37 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 38 H 0.07 1.96 6.34 -2.39 -0.02 1.95 16 39 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.12 2.62 4.26 -2.38 -0.01 2.61 16 41 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 43 H 0.10 1.03 6.46 -2.39 -0.02 1.02 16 44 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 47 H 0.06 1.08 6.35 -2.38 -0.02 1.07 16 48 H 0.08 0.94 8.14 -2.39 -0.02 0.93 16 49 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 50 H 0.38 3.79 9.04 -74.05 -0.67 3.12 16 Total: -1.00 -68.73 389.98 -1.93 -70.66 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: 0.22 Total: 19.10 kcal Atomic # 6 Polarization: -33.14 SS G_CDS: 5.66 Total: -27.48 kcal Atomic # 7 Polarization: -79.34 SS G_CDS: -7.21 Total: -86.56 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: -1.41 Total: -10.21 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Atomic # 16 Polarization: -10.94 SS G_CDS: -1.21 Total: -12.16 kcal Total: -68.73 -1.93 -70.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189936921.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.561 kcal (2) G-P(sol) polarization free energy of solvation -68.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds