Wall clock time and date at job start Tue Mar 31 2020 11:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46612 * 2 1 4 4 N 1.46496 * 109.46946 * 119.99699 * 2 1 3 5 5 C 1.46499 * 120.00537 * 305.23018 * 4 2 1 6 6 C 1.39007 * 119.99574 * 125.23655 * 4 2 1 7 7 C 1.39137 * 119.70843 * 6.98685 * 6 4 2 8 8 C 1.38295 * 119.09977 * 180.02562 * 7 6 4 9 9 C 1.38887 * 118.50235 * 0.02562 * 8 7 6 10 10 C 1.50699 * 120.33151 * 180.02562 * 9 8 7 11 11 N 1.46902 * 109.47188 * 90.00105 * 10 9 8 12 12 C 1.46901 * 111.00006 * 189.99818 * 11 10 9 13 13 C 1.50705 * 109.47056 * 163.52488 * 12 11 10 14 14 H 1.08000 * 119.99714 * 2.20921 * 13 12 11 15 15 C 1.37876 * 120.00037 * 182.20651 * 13 12 11 16 16 N 1.31518 * 120.00010 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00037 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47335 * 90.00213 * 17 15 13 19 19 H 1.48498 * 109.47219 * 210.00293 * 17 15 13 20 20 H 1.48496 * 109.47081 * 330.00027 * 17 15 13 21 21 C 1.46898 * 111.00243 * 66.04168 * 11 10 9 22 22 C 1.52999 * 109.46912 * 56.98146 * 21 11 10 23 23 C 1.47201 * 109.47126 * 180.77577 * 22 21 11 24 24 N 9.03981 * 127.56185 * 125.93151 * 2 1 3 25 25 C 1.38021 * 119.33313 * 0.02562 * 9 8 7 26 26 N 1.31974 * 120.85183 * 359.97438 * 25 9 8 27 27 H 1.08994 * 109.47371 * 299.99875 * 1 2 3 28 28 H 1.09001 * 109.47232 * 60.00337 * 1 2 3 29 29 H 1.08999 * 109.46741 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47138 * 240.00493 * 2 1 3 31 31 H 1.09002 * 109.47466 * 299.99442 * 3 2 1 32 32 H 1.08994 * 109.47150 * 59.99990 * 3 2 1 33 33 H 1.09002 * 109.46808 * 179.97438 * 3 2 1 34 34 H 1.08991 * 109.47321 * 270.00369 * 5 4 2 35 35 H 1.09000 * 109.46650 * 30.00530 * 5 4 2 36 36 H 1.08995 * 109.47088 * 149.99773 * 5 4 2 37 37 H 1.08007 * 120.44773 * 359.97438 * 7 6 4 38 38 H 1.08004 * 120.74828 * 180.02562 * 8 7 6 39 39 H 1.08998 * 109.47364 * 209.99585 * 10 9 8 40 40 H 1.08993 * 109.47307 * 329.99992 * 10 9 8 41 41 H 1.08999 * 109.47283 * 283.52522 * 12 11 10 42 42 H 1.08994 * 109.46969 * 43.52964 * 12 11 10 43 43 H 0.96993 * 119.99730 * 179.97438 * 16 15 13 44 44 H 1.08994 * 109.47158 * 176.98087 * 21 11 10 45 45 H 1.09004 * 109.47347 * 296.98484 * 21 11 10 46 46 H 1.08997 * 109.47298 * 300.77604 * 22 21 11 47 47 H 1.09002 * 109.47397 * 60.77543 * 22 21 11 48 48 H 1.07998 * 119.57198 * 180.02562 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.5725 -0.2603 2.5237 6 6 2.9048 -1.7540 1.0715 7 6 3.4377 -2.0649 -0.1756 8 6 4.3181 -3.1258 -0.2853 9 6 4.6370 -3.8435 0.8602 10 6 5.5923 -5.0069 0.7880 11 7 6.9640 -4.5284 1.0058 12 6 7.9427 -5.5833 0.7102 13 6 9.3093 -4.9693 0.5476 14 1 9.4443 -3.9071 0.6884 15 6 10.3873 -5.7637 0.2192 16 7 10.2228 -7.0572 0.0473 17 14 12.0814 -5.0029 0.0183 18 1 12.7874 -5.0147 1.3247 19 1 12.8616 -5.7863 -0.9730 20 1 11.9421 -3.6028 -0.4564 21 6 7.1337 -4.0211 2.3739 22 6 6.7680 -5.1196 3.3741 23 6 6.9202 -4.6055 4.7450 24 7 7.0409 -4.2050 5.8023 25 6 4.0703 -3.4806 2.0652 26 7 3.2330 -2.4633 2.1402 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 3.1299 1.4426 0.0005 34 1 2.2533 0.4996 2.9070 35 1 0.5673 0.1550 2.4524 36 1 1.5651 -1.1156 3.1993 37 1 3.1668 -1.4860 -1.0463 38 1 4.7479 -3.3902 -1.2402 39 1 5.3356 -5.7360 1.5565 40 1 5.5221 -5.4742 -0.1941 41 1 7.9620 -6.3011 1.5303 42 1 7.6610 -6.0922 -0.2116 43 1 10.9811 -7.6160 -0.1842 44 1 8.1712 -3.7231 2.5248 45 1 6.4826 -3.1602 2.5256 46 1 5.7347 -5.4273 3.2141 47 1 7.4281 -5.9753 3.2316 48 1 4.3159 -4.0358 2.9584 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191455107.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:18 Heat of formation + Delta-G solvation = 79.654382 kcal Electronic energy + Delta-G solvation = -26267.039147 eV Core-core repulsion = 22743.584913 eV Total energy + Delta-G solvation = -3523.454234 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.37315 -38.29053 -37.19384 -35.90351 -33.26424 -32.60291 -31.91085 -30.90193 -30.06214 -27.63646 -27.39516 -26.27768 -25.11033 -23.56297 -22.91000 -21.94631 -20.20494 -19.64009 -17.81837 -17.52473 -16.50425 -16.29785 -15.46757 -15.17278 -15.13961 -14.87544 -14.58776 -14.35764 -14.20685 -13.77908 -13.68395 -13.32518 -13.24497 -13.09284 -12.92972 -12.57928 -12.41444 -12.32769 -12.13874 -12.01825 -11.93383 -11.62317 -11.59085 -11.45897 -11.20876 -11.11886 -11.00004 -10.75714 -10.56757 -10.29173 -9.96604 -9.73427 -9.51698 -9.32626 -9.15050 -8.47274 -7.50128 -7.29421 -6.07172 -4.08203 1.44984 1.66557 2.84400 3.06775 3.09512 3.30607 3.37618 3.41643 4.03184 4.31594 4.39061 4.41930 4.69924 4.76805 4.86916 4.93145 5.02870 5.16008 5.22253 5.25549 5.29203 5.32622 5.35927 5.40532 5.42381 5.47273 5.51655 5.56161 5.60037 5.70822 5.75126 5.82037 5.87998 5.93667 6.01654 6.12649 6.21886 6.27656 6.56232 6.67948 6.76573 6.97747 7.13342 7.21175 7.43116 7.74615 7.85551 8.00034 8.08008 8.29298 8.44169 8.99346 9.56622 11.03025 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.014865 B = 0.003083 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.152884 B = 9080.495350 C =10012.314353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.144 3.856 3 C -0.164 4.164 4 N -0.612 5.612 5 C 0.099 3.901 6 C 0.394 3.606 7 C -0.241 4.241 8 C -0.013 4.013 9 C -0.172 4.172 10 C 0.094 3.906 11 N -0.521 5.521 12 C 0.187 3.813 13 C -0.506 4.506 14 H 0.064 0.936 15 C 0.057 3.943 16 N -0.898 5.898 17 Si 0.894 3.106 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.273 1.273 21 C 0.070 3.930 22 C -0.076 4.076 23 C 0.222 3.778 24 N -0.457 5.457 25 C 0.146 3.854 26 N -0.543 5.543 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.093 0.907 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.042 0.958 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.127 0.873 38 H 0.134 0.866 39 H 0.040 0.960 40 H 0.081 0.919 41 H 0.000 1.000 42 H 0.034 0.966 43 H 0.261 0.739 44 H 0.091 0.909 45 H 0.065 0.935 46 H 0.101 0.899 47 H 0.120 0.880 48 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.379 10.520 -1.719 22.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.040 3.960 3 C -0.223 4.223 4 N -0.327 5.327 5 C -0.044 4.044 6 C 0.161 3.839 7 C -0.266 4.266 8 C -0.039 4.039 9 C -0.177 4.177 10 C -0.034 4.034 11 N -0.243 5.243 12 C 0.062 3.938 13 C -0.545 4.545 14 H 0.082 0.918 15 C -0.144 4.144 16 N -0.538 5.538 17 Si 0.722 3.278 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.198 1.198 21 C -0.061 4.061 22 C -0.118 4.118 23 C -0.096 4.096 24 N -0.135 5.135 25 C -0.011 4.011 26 N -0.259 5.259 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.111 0.889 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.060 0.940 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.145 0.855 38 H 0.152 0.848 39 H 0.058 0.942 40 H 0.099 0.901 41 H 0.018 0.982 42 H 0.052 0.948 43 H 0.071 0.929 44 H 0.109 0.891 45 H 0.083 0.917 46 H 0.119 0.881 47 H 0.137 0.863 48 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -19.480 11.694 0.283 22.723 hybrid contribution 1.222 -0.723 -0.763 1.612 sum -18.259 10.972 -0.480 21.307 Atomic orbital electron populations 1.22187 0.95155 1.02494 1.02332 1.21058 0.93883 0.92964 0.88103 1.22201 1.02004 0.95917 1.02151 1.46286 1.47812 1.32550 1.06094 1.21467 0.98305 1.00512 0.84101 1.18273 0.88845 0.87289 0.89526 1.21397 1.04875 1.03148 0.97160 1.21227 0.92214 0.91676 0.98799 1.20595 1.01724 1.01349 0.94020 1.20968 0.88476 0.92280 1.01719 1.62425 1.01823 1.38847 1.21209 1.19878 0.89709 0.88013 0.96191 1.21139 0.91748 0.94771 1.46844 0.91827 1.24946 0.99148 0.94800 0.95523 1.69936 1.31222 1.04164 1.48441 0.86551 0.84039 0.79336 0.77852 1.20782 1.21316 1.19770 1.22095 1.03199 0.94721 0.86070 1.20302 1.04683 1.02960 0.83878 1.29284 0.92583 0.92998 0.94729 1.81192 1.09609 1.09899 1.12790 1.22270 0.90563 0.91516 0.96731 1.67113 1.18665 1.09157 1.30989 0.92177 0.91423 0.92178 0.88936 0.91603 0.92387 0.92076 0.93980 0.92186 0.90376 0.85487 0.84821 0.94240 0.90104 0.98212 0.94785 0.92898 0.89089 0.91676 0.88094 0.86263 0.83625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 9.06 37.16 0.34 -0.73 16 2 C 0.14 1.16 3.14 -67.93 -0.21 0.95 16 3 C -0.16 -1.19 9.27 37.16 0.34 -0.84 16 4 N -0.61 -6.61 2.88 -174.09 -0.50 -7.11 16 5 C 0.10 0.97 9.78 59.85 0.59 1.55 16 6 C 0.39 5.22 7.36 -155.02 -1.14 4.08 16 7 C -0.24 -2.98 9.28 -39.23 -0.36 -3.35 16 8 C -0.01 -0.17 9.85 -39.32 -0.39 -0.56 16 9 C -0.17 -2.40 4.89 -104.46 -0.51 -2.91 16 10 C 0.09 1.39 4.83 -4.98 -0.02 1.37 16 11 N -0.52 -9.47 4.64 -237.52 -1.10 -10.58 16 12 C 0.19 4.19 4.63 -4.97 -0.02 4.17 16 13 C -0.51 -13.05 8.54 -34.44 -0.29 -13.34 16 14 H 0.06 1.65 7.51 -52.49 -0.39 1.26 16 15 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 16 N -0.90 -25.07 13.29 55.43 0.74 -24.33 16 17 Si 0.89 20.89 29.54 -169.99 -5.02 15.86 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 21 C 0.07 1.16 4.70 -3.83 -0.02 1.14 16 22 C -0.08 -1.09 4.75 -29.52 -0.14 -1.23 16 23 C 0.22 3.53 15.44 -20.72 -0.32 3.21 16 24 N -0.46 -8.26 18.54 42.19 0.78 -7.48 16 25 C 0.15 2.04 9.20 -17.57 -0.16 1.87 16 26 N -0.54 -7.89 9.07 -12.44 -0.11 -8.00 16 27 H 0.06 0.37 6.51 -51.93 -0.34 0.04 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.09 0.73 5.38 -51.93 -0.28 0.45 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.41 7.80 -51.93 -0.41 0.01 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.45 6.17 -51.93 -0.32 0.13 16 36 H 0.08 0.87 7.27 -51.93 -0.38 0.49 16 37 H 0.13 1.28 5.85 -52.48 -0.31 0.98 16 38 H 0.13 1.62 8.06 -52.48 -0.42 1.20 16 39 H 0.04 0.53 5.85 -51.93 -0.30 0.22 16 40 H 0.08 1.20 7.81 -51.93 -0.41 0.80 16 41 H 0.00 0.01 6.08 -51.93 -0.32 -0.31 16 42 H 0.03 0.83 7.80 -51.93 -0.40 0.42 16 43 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 44 H 0.09 1.71 7.15 -51.93 -0.37 1.34 16 45 H 0.06 1.04 6.37 -51.93 -0.33 0.71 16 46 H 0.10 1.20 4.82 -51.93 -0.25 0.95 16 47 H 0.12 1.84 6.39 -51.93 -0.33 1.51 16 48 H 0.15 1.84 6.34 -52.49 -0.33 1.51 16 LS Contribution 381.65 15.07 5.75 5.75 Total: -1.00 -30.08 381.65 -9.04 -39.11 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -7.14 Total: -0.05 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -2.43 Total: -3.18 kcal Atomic # 7 Polarization: -57.30 SS G_CDS: -0.20 Total: -57.49 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.08 -9.04 -39.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191455107.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.767 kcal (2) G-P(sol) polarization free energy of solvation -30.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds