Wall clock time and date at job start Tue Mar 31 2020 11:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46612 * 2 1 4 4 N 1.46496 * 109.46946 * 119.99699 * 2 1 3 5 5 C 1.46499 * 120.00537 * 305.23018 * 4 2 1 6 6 C 1.39007 * 119.99574 * 125.23655 * 4 2 1 7 7 C 1.39137 * 119.70843 * 6.98685 * 6 4 2 8 8 C 1.38295 * 119.09977 * 180.02562 * 7 6 4 9 9 C 1.38887 * 118.50235 * 0.02562 * 8 7 6 10 10 C 1.50699 * 120.33151 * 180.02562 * 9 8 7 11 11 N 1.46902 * 109.47188 * 90.00105 * 10 9 8 12 12 C 1.46901 * 111.00006 * 189.99818 * 11 10 9 13 13 C 1.50705 * 109.47056 * 163.52488 * 12 11 10 14 14 H 1.08000 * 119.99714 * 2.20921 * 13 12 11 15 15 C 1.37876 * 120.00037 * 182.20651 * 13 12 11 16 16 N 1.31518 * 120.00010 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00037 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47335 * 90.00213 * 17 15 13 19 19 H 1.48498 * 109.47219 * 210.00293 * 17 15 13 20 20 H 1.48496 * 109.47081 * 330.00027 * 17 15 13 21 21 C 1.46898 * 111.00243 * 66.04168 * 11 10 9 22 22 C 1.52999 * 109.46912 * 56.98146 * 21 11 10 23 23 C 1.47201 * 109.47126 * 180.77577 * 22 21 11 24 24 N 9.03981 * 127.56185 * 125.93151 * 2 1 3 25 25 C 1.38021 * 119.33313 * 0.02562 * 9 8 7 26 26 N 1.31974 * 120.85183 * 359.97438 * 25 9 8 27 27 H 1.08994 * 109.47371 * 299.99875 * 1 2 3 28 28 H 1.09001 * 109.47232 * 60.00337 * 1 2 3 29 29 H 1.08999 * 109.46741 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47138 * 240.00493 * 2 1 3 31 31 H 1.09002 * 109.47466 * 299.99442 * 3 2 1 32 32 H 1.08994 * 109.47150 * 59.99990 * 3 2 1 33 33 H 1.09002 * 109.46808 * 179.97438 * 3 2 1 34 34 H 1.08991 * 109.47321 * 270.00369 * 5 4 2 35 35 H 1.09000 * 109.46650 * 30.00530 * 5 4 2 36 36 H 1.08995 * 109.47088 * 149.99773 * 5 4 2 37 37 H 1.08007 * 120.44773 * 359.97438 * 7 6 4 38 38 H 1.08004 * 120.74828 * 180.02562 * 8 7 6 39 39 H 1.08998 * 109.47364 * 209.99585 * 10 9 8 40 40 H 1.08993 * 109.47307 * 329.99992 * 10 9 8 41 41 H 1.08999 * 109.47283 * 283.52522 * 12 11 10 42 42 H 1.08994 * 109.46969 * 43.52964 * 12 11 10 43 43 H 0.96993 * 119.99730 * 179.97438 * 16 15 13 44 44 H 1.08994 * 109.47158 * 176.98087 * 21 11 10 45 45 H 1.09004 * 109.47347 * 296.98484 * 21 11 10 46 46 H 1.08997 * 109.47298 * 300.77604 * 22 21 11 47 47 H 1.09002 * 109.47397 * 60.77543 * 22 21 11 48 48 H 1.07998 * 119.57198 * 180.02562 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.5725 -0.2603 2.5237 6 6 2.9048 -1.7540 1.0715 7 6 3.4377 -2.0649 -0.1756 8 6 4.3181 -3.1258 -0.2853 9 6 4.6370 -3.8435 0.8602 10 6 5.5923 -5.0069 0.7880 11 7 6.9640 -4.5284 1.0058 12 6 7.9427 -5.5833 0.7102 13 6 9.3093 -4.9693 0.5476 14 1 9.4443 -3.9071 0.6884 15 6 10.3873 -5.7637 0.2192 16 7 10.2228 -7.0572 0.0473 17 14 12.0814 -5.0029 0.0183 18 1 12.7874 -5.0147 1.3247 19 1 12.8616 -5.7863 -0.9730 20 1 11.9421 -3.6028 -0.4564 21 6 7.1337 -4.0211 2.3739 22 6 6.7680 -5.1196 3.3741 23 6 6.9202 -4.6055 4.7450 24 7 7.0409 -4.2050 5.8023 25 6 4.0703 -3.4806 2.0652 26 7 3.2330 -2.4633 2.1402 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 3.1299 1.4426 0.0005 34 1 2.2533 0.4996 2.9070 35 1 0.5673 0.1550 2.4524 36 1 1.5651 -1.1156 3.1993 37 1 3.1668 -1.4860 -1.0463 38 1 4.7479 -3.3902 -1.2402 39 1 5.3356 -5.7360 1.5565 40 1 5.5221 -5.4742 -0.1941 41 1 7.9620 -6.3011 1.5303 42 1 7.6610 -6.0922 -0.2116 43 1 10.9811 -7.6160 -0.1842 44 1 8.1712 -3.7231 2.5248 45 1 6.4826 -3.1602 2.5256 46 1 5.7347 -5.4273 3.2141 47 1 7.4281 -5.9753 3.2316 48 1 4.3159 -4.0358 2.9584 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191455107.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:17 Heat of formation + Delta-G solvation = 63.502142 kcal Electronic energy + Delta-G solvation = -26267.739561 eV Core-core repulsion = 22743.584913 eV Total energy + Delta-G solvation = -3524.154647 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.37178 -39.46429 -38.19792 -37.27679 -34.79518 -33.95973 -32.82162 -32.00520 -31.40320 -28.91284 -28.06147 -27.48782 -26.28065 -25.09778 -23.96991 -23.06493 -21.36320 -20.70035 -18.89557 -18.63035 -18.20584 -17.50503 -16.85372 -16.48215 -16.08583 -15.96027 -15.74688 -15.46706 -15.32875 -15.21667 -14.77375 -14.37739 -14.25105 -14.09145 -13.86538 -13.84375 -13.56744 -13.45718 -13.16010 -13.09477 -12.94258 -12.91891 -12.78767 -12.63390 -12.53058 -12.44418 -12.23609 -12.18056 -11.84232 -11.63412 -11.52467 -11.22654 -10.72404 -10.53219 -10.48977 -10.20329 -8.87834 -8.32639 -8.09265 -6.16393 0.43748 0.63179 1.44845 1.47185 1.56451 1.75008 1.78798 2.04409 2.46908 2.93591 3.07208 3.23780 3.59461 3.66638 3.92749 4.02029 4.09830 4.15189 4.18312 4.19366 4.25148 4.33416 4.38915 4.50134 4.56919 4.71772 4.71810 4.77311 4.78729 4.81767 4.94110 4.97401 5.00879 5.02905 5.05126 5.16297 5.21075 5.32616 5.38127 5.41734 5.44479 5.63916 5.76771 5.78385 6.16960 6.19253 6.42431 6.51403 6.59243 6.73048 6.99328 7.30009 7.52057 8.98904 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.014865 B = 0.003083 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.152884 B = 9080.495350 C =10012.314353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.137 3.863 3 C -0.159 4.159 4 N -0.612 5.612 5 C 0.099 3.901 6 C 0.384 3.616 7 C -0.241 4.241 8 C -0.020 4.020 9 C -0.182 4.182 10 C 0.098 3.902 11 N -0.529 5.529 12 C 0.201 3.799 13 C -0.514 4.514 14 H 0.056 0.944 15 C 0.010 3.990 16 N -0.929 5.929 17 Si 0.950 3.050 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.270 1.270 21 C 0.076 3.924 22 C -0.064 4.064 23 C 0.242 3.758 24 N -0.492 5.492 25 C 0.143 3.857 26 N -0.563 5.563 27 H 0.064 0.936 28 H 0.086 0.914 29 H 0.049 0.951 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.059 0.941 33 H 0.043 0.957 34 H 0.039 0.961 35 H 0.084 0.916 36 H 0.062 0.938 37 H 0.149 0.851 38 H 0.141 0.859 39 H 0.058 0.942 40 H 0.078 0.922 41 H -0.006 1.006 42 H 0.013 0.987 43 H 0.262 0.738 44 H 0.065 0.935 45 H 0.074 0.926 46 H 0.132 0.868 47 H 0.113 0.887 48 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.798 11.797 -2.213 24.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.034 3.966 3 C -0.217 4.217 4 N -0.327 5.327 5 C -0.044 4.044 6 C 0.149 3.851 7 C -0.266 4.266 8 C -0.046 4.046 9 C -0.187 4.187 10 C -0.029 4.029 11 N -0.251 5.251 12 C 0.075 3.925 13 C -0.552 4.552 14 H 0.075 0.925 15 C -0.189 4.189 16 N -0.570 5.570 17 Si 0.776 3.224 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.194 1.194 21 C -0.054 4.054 22 C -0.105 4.105 23 C -0.074 4.074 24 N -0.170 5.170 25 C -0.015 4.015 26 N -0.281 5.281 27 H 0.082 0.918 28 H 0.105 0.895 29 H 0.069 0.931 30 H 0.113 0.887 31 H 0.104 0.896 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.102 0.898 36 H 0.081 0.919 37 H 0.166 0.834 38 H 0.159 0.841 39 H 0.076 0.924 40 H 0.096 0.904 41 H 0.012 0.988 42 H 0.031 0.969 43 H 0.070 0.930 44 H 0.084 0.916 45 H 0.093 0.907 46 H 0.150 0.850 47 H 0.131 0.869 48 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -20.928 13.007 -0.213 24.642 hybrid contribution 1.554 -1.024 -0.637 1.967 sum -19.375 11.983 -0.850 22.797 Atomic orbital electron populations 1.22137 0.93651 1.02217 1.03511 1.21298 0.95020 0.93156 0.87099 1.22156 1.00863 0.95458 1.03245 1.46581 1.46955 1.31839 1.07304 1.21492 0.99562 0.99789 0.83513 1.18610 0.89120 0.87719 0.89628 1.21603 1.04313 1.02953 0.97700 1.21416 0.92372 0.91832 0.98981 1.20460 1.02193 1.01525 0.94526 1.20950 0.86598 0.93151 1.02223 1.62266 1.02910 1.37628 1.22329 1.19530 0.89528 0.88515 0.94931 1.21479 0.93461 0.94484 1.45797 0.92541 1.25636 1.02366 0.95204 0.95661 1.70028 1.32034 1.05181 1.49737 0.85675 0.80360 0.78623 0.77712 1.20562 1.21126 1.19419 1.21937 1.01935 0.95626 0.85905 1.20242 1.06333 1.01637 0.82322 1.29402 0.91418 0.92037 0.94593 1.81214 1.10932 1.10953 1.13931 1.22404 0.90488 0.91561 0.96999 1.67148 1.19383 1.09775 1.31791 0.91754 0.89501 0.93143 0.88744 0.89592 0.92231 0.93749 0.94272 0.89798 0.91926 0.83376 0.84092 0.92414 0.90354 0.98792 0.96908 0.92953 0.91624 0.90719 0.85002 0.86913 0.82741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 9.06 71.98 0.65 -0.98 16 2 C 0.14 1.91 3.14 44.99 0.14 2.06 16 3 C -0.16 -1.94 9.27 71.98 0.67 -1.27 16 4 N -0.61 -12.26 2.88 -704.69 -2.03 -14.29 16 5 C 0.10 1.80 9.78 127.77 1.25 3.05 16 6 C 0.38 9.69 7.36 133.06 0.98 10.67 16 7 C -0.24 -5.61 9.28 22.50 0.21 -5.40 16 8 C -0.02 -0.50 9.85 22.44 0.22 -0.28 16 9 C -0.18 -4.86 4.89 -19.76 -0.10 -4.95 16 10 C 0.10 2.82 4.83 85.56 0.41 3.23 16 11 N -0.53 -19.03 4.64 -905.38 -4.20 -23.23 16 12 C 0.20 9.08 4.63 85.56 0.40 9.47 16 13 C -0.51 -26.65 8.54 25.60 0.22 -26.43 16 14 H 0.06 2.95 7.51 -2.91 -0.02 2.93 16 15 C 0.01 0.51 5.46 84.65 0.46 0.97 16 16 N -0.93 -52.28 13.29 21.45 0.28 -51.99 16 17 Si 0.95 42.94 29.54 68.60 2.03 44.97 16 18 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 19 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 21 C 0.08 2.49 4.70 86.30 0.41 2.89 16 22 C -0.06 -1.75 4.75 28.79 0.14 -1.62 16 23 C 0.24 7.49 15.44 89.43 1.38 8.87 16 24 N -0.49 -17.48 18.54 20.02 0.37 -17.11 16 25 C 0.14 3.79 9.20 84.62 0.78 4.57 16 26 N -0.56 -15.82 9.07 -193.26 -1.75 -17.58 16 27 H 0.06 0.62 6.51 -2.39 -0.02 0.60 16 28 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.09 1.27 5.38 -2.39 -0.01 1.26 16 31 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 0.71 7.80 -2.39 -0.02 0.69 16 33 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.08 1.09 6.17 -2.39 -0.01 1.08 16 36 H 0.06 1.34 7.27 -2.39 -0.02 1.33 16 37 H 0.15 2.69 5.85 -2.91 -0.02 2.67 16 38 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 39 H 0.06 1.43 5.85 -2.39 -0.01 1.42 16 40 H 0.08 2.28 7.81 -2.39 -0.02 2.26 16 41 H -0.01 -0.26 6.08 -2.39 -0.01 -0.27 16 42 H 0.01 0.63 7.80 -2.39 -0.02 0.61 16 43 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 44 H 0.07 2.48 7.15 -2.39 -0.02 2.46 16 45 H 0.07 2.32 6.37 -2.39 -0.02 2.30 16 46 H 0.13 2.83 4.82 -2.39 -0.01 2.82 16 47 H 0.11 3.38 6.39 -2.39 -0.02 3.37 16 48 H 0.16 3.65 6.34 -2.91 -0.02 3.63 16 Total: -1.00 -64.28 381.65 3.88 -60.41 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 0.97 Total: 13.97 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: 8.21 Total: 4.86 kcal Atomic # 7 Polarization: -116.87 SS G_CDS: -7.33 Total: -124.20 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -64.28 3.88 -60.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191455107.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.908 kcal (2) G-P(sol) polarization free energy of solvation -64.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds