Wall clock time and date at job start Tue Mar 31 2020 10:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.50542 * 2 1 4 4 C 1.53094 * 109.51020 * 239.91176 * 2 1 3 5 5 N 1.47011 * 109.26017 * 183.21857 * 4 2 1 6 6 C 1.46899 * 111.00014 * 182.39205 * 5 4 2 7 7 C 1.52997 * 109.47254 * 169.99684 * 6 5 4 8 8 N 1.46894 * 109.47515 * 179.97438 * 7 6 5 9 9 C 1.46897 * 111.00086 * 293.95813 * 8 7 6 10 10 C 1.46900 * 111.00167 * 169.99883 * 8 7 6 11 11 C 1.53008 * 109.47001 * 190.00016 * 10 8 7 12 12 C 1.53005 * 109.46881 * 179.97438 * 11 10 8 13 13 S 1.81004 * 109.46871 * 180.02562 * 12 11 10 14 14 C 1.76199 * 99.99903 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99826 * 0.02562 * 14 13 12 16 16 C 1.38791 * 119.99878 * 180.02562 * 14 13 12 17 17 N 1.31631 * 120.00250 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99869 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47165 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47014 * 120.00297 * 18 16 14 21 21 H 1.48504 * 109.47043 * 239.99660 * 18 16 14 22 22 C 1.47013 * 110.75620 * 58.61258 * 5 4 2 23 23 C 1.53099 * 109.25643 * 301.38586 * 22 5 4 24 24 H 1.08994 * 109.50770 * 296.91494 * 23 22 5 25 25 C 1.52999 * 109.50705 * 176.78053 * 23 22 5 26 26 O 1.43014 * 109.25885 * 56.84790 * 23 22 5 27 27 H 1.09001 * 109.47304 * 180.09009 * 1 2 3 28 28 H 1.08999 * 109.47491 * 300.09016 * 1 2 3 29 29 H 1.09003 * 109.47097 * 60.09172 * 1 2 3 30 30 H 1.08999 * 109.50736 * 63.28054 * 4 2 1 31 31 H 1.09004 * 109.53644 * 303.17212 * 4 2 1 32 32 H 1.09002 * 109.47043 * 289.99755 * 6 5 4 33 33 H 1.09001 * 109.47354 * 49.99816 * 6 5 4 34 34 H 1.09002 * 109.47153 * 300.00004 * 7 6 5 35 35 H 1.08998 * 109.47533 * 59.99633 * 7 6 5 36 36 H 1.08994 * 109.47768 * 59.99563 * 9 8 7 37 37 H 1.09001 * 109.47114 * 180.02562 * 9 8 7 38 38 H 1.09004 * 109.46895 * 299.99681 * 9 8 7 39 39 H 1.09000 * 109.47344 * 309.99988 * 10 8 7 40 40 H 1.08997 * 109.47244 * 70.00491 * 10 8 7 41 41 H 1.09000 * 109.47048 * 300.00153 * 11 10 8 42 42 H 1.08997 * 109.46733 * 60.00162 * 11 10 8 43 43 H 1.09002 * 109.46931 * 300.00141 * 12 11 10 44 44 H 1.08995 * 109.46865 * 60.00212 * 12 11 10 45 45 H 0.97001 * 120.00488 * 179.97438 * 17 16 14 46 46 H 1.08995 * 109.50757 * 61.32024 * 22 5 4 47 47 H 1.09000 * 109.50677 * 181.45449 * 22 5 4 48 48 H 1.08997 * 109.47084 * 300.21947 * 25 23 22 49 49 H 1.09005 * 109.46729 * 60.21695 * 25 23 22 50 50 H 1.08996 * 109.47468 * 180.21722 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0412 -0.7234 -1.2486 5 7 3.5093 -0.7880 -1.2046 6 6 4.0447 -1.4260 -2.4147 7 6 5.5645 -1.2538 -2.4522 8 7 6.0999 -1.8923 -3.6619 9 6 5.9143 -3.3487 -3.6147 10 6 7.5147 -1.5479 -3.8567 11 6 7.9680 -2.0178 -5.2405 12 6 9.4414 -1.6586 -5.4436 13 16 9.9775 -2.2138 -7.0809 14 6 11.6589 -1.6880 -7.0468 15 1 12.0503 -1.1867 -6.1739 16 6 12.4802 -1.9181 -8.1417 17 7 12.0033 -2.5295 -9.2053 18 14 14.2626 -1.3600 -8.1058 19 1 14.5493 -0.7021 -6.8058 20 1 15.1531 -2.5366 -8.2729 21 1 14.5021 -0.3972 -9.2108 22 6 3.9640 -1.4883 0.0054 23 6 3.4334 -0.7571 1.2414 24 1 3.8533 0.2480 1.2778 25 6 3.8357 -1.5258 2.5016 26 8 2.0075 -0.6766 1.1660 27 1 -0.3634 -1.0277 0.0016 28 1 -0.3634 0.5152 0.8891 29 1 -0.3633 0.5124 -0.8908 30 1 1.7274 -0.1787 -2.1390 31 1 1.6332 -1.7338 -1.2772 32 1 3.7995 -2.4880 -2.4043 33 1 3.6044 -0.9601 -3.2963 34 1 5.8097 -0.1918 -2.4626 35 1 6.0048 -1.7197 -1.5707 36 1 4.8512 -3.5773 -3.5402 37 1 6.3199 -3.7963 -4.5220 38 1 6.4345 -3.7533 -2.7464 39 1 7.6395 -0.4678 -3.7809 40 1 8.1166 -2.0379 -3.0915 41 1 7.8432 -3.0980 -5.3163 42 1 7.3661 -1.5279 -6.0058 43 1 9.5657 -0.5783 -5.3679 44 1 10.0435 -2.1482 -4.6783 45 1 12.5772 -2.6900 -9.9707 46 1 3.5867 -2.5109 -0.0025 47 1 5.0536 -1.5019 0.0303 48 1 3.4168 -2.5314 2.4631 49 1 4.9225 -1.5869 2.5585 50 1 3.4544 -1.0069 3.3811 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195303918.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:06 Heat of formation + Delta-G solvation = -53.380663 kcal Electronic energy + Delta-G solvation = -24105.172092 eV Core-core repulsion = 20679.100227 eV Total energy + Delta-G solvation = -3426.071866 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.193 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.25230 -38.15631 -36.06139 -34.13585 -32.97699 -32.40785 -30.83733 -29.08255 -27.21126 -27.08877 -25.74893 -25.16279 -23.08557 -22.41491 -20.97783 -20.69789 -20.53921 -17.46650 -16.99965 -16.76447 -16.11262 -15.81393 -15.49105 -15.23976 -14.85344 -14.79467 -14.42491 -14.27751 -13.88007 -13.64804 -13.28259 -13.24885 -12.99291 -12.85194 -12.53055 -12.47769 -12.31299 -12.16661 -12.04332 -11.75073 -11.72305 -11.39822 -11.33035 -11.26640 -11.07172 -11.06570 -10.78912 -10.74288 -10.59474 -10.25692 -9.91192 -9.50623 -9.05545 -8.77414 -8.35570 -8.27659 -6.51034 -6.21752 -3.91667 3.17333 3.21462 3.23794 3.29428 3.31454 3.59599 4.06769 4.23879 4.32441 4.49415 4.53791 4.69865 4.72487 4.80134 4.91397 4.98518 5.05452 5.09406 5.13571 5.14278 5.18937 5.21732 5.26235 5.31890 5.37694 5.38631 5.47509 5.51380 5.52790 5.59043 5.66724 5.68312 5.71389 5.75628 5.77156 5.80183 5.90728 5.95853 6.10078 6.36868 6.56101 6.57672 6.62493 6.77015 6.87152 7.03933 7.06486 7.61972 8.38072 9.24663 10.86491 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.032205 B = 0.001762 C = 0.001722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.215083 B =15882.821812 C =16253.220625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.090 3.910 3 H 0.067 0.933 4 C 0.026 3.974 5 N -0.538 5.538 6 C 0.060 3.940 7 C 0.060 3.940 8 N -0.541 5.541 9 C 0.018 3.982 10 C 0.062 3.938 11 C -0.094 4.094 12 C -0.113 4.113 13 S -0.133 6.133 14 C -0.515 4.515 15 H 0.073 0.927 16 C 0.070 3.930 17 N -0.870 5.870 18 Si 0.918 3.082 19 H -0.272 1.272 20 H -0.280 1.280 21 H -0.280 1.280 22 C 0.021 3.979 23 C 0.090 3.910 24 H 0.067 0.933 25 C -0.145 4.145 26 O -0.381 6.381 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.042 0.958 32 H 0.036 0.964 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.031 0.969 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.022 0.978 39 H 0.074 0.926 40 H 0.032 0.968 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.060 0.940 44 H 0.057 0.943 45 H 0.266 0.734 46 H 0.042 0.958 47 H 0.087 0.913 48 H 0.062 0.938 49 H 0.073 0.927 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.635 2.839 21.085 30.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.032 3.968 3 H 0.085 0.915 4 C -0.103 4.103 5 N -0.263 5.263 6 C -0.068 4.068 7 C -0.069 4.069 8 N -0.265 5.265 9 C -0.130 4.130 10 C -0.067 4.067 11 C -0.132 4.132 12 C -0.262 4.262 13 S 0.095 5.905 14 C -0.664 4.664 15 H 0.091 0.909 16 C -0.138 4.138 17 N -0.505 5.505 18 Si 0.745 3.255 19 H -0.196 1.196 20 H -0.206 1.206 21 H -0.206 1.206 22 C -0.107 4.107 23 C 0.033 3.967 24 H 0.085 0.915 25 C -0.202 4.202 26 O -0.301 6.301 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.105 0.895 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.049 0.951 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.041 0.959 39 H 0.092 0.908 40 H 0.050 0.950 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.060 0.940 47 H 0.105 0.895 48 H 0.081 0.919 49 H 0.092 0.908 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -22.366 2.816 19.825 30.020 hybrid contribution 2.227 -0.144 1.318 2.592 sum -20.139 2.672 21.143 29.322 Atomic orbital electron populations 1.21747 0.92730 1.02964 1.02744 1.22134 0.94781 0.95668 0.84206 0.91509 1.22808 0.87655 1.00279 0.99525 1.62106 1.08792 1.53074 1.02313 1.22114 0.95351 0.97099 0.92222 1.22057 0.93796 1.00341 0.90669 1.61881 1.18378 1.09406 1.36855 1.22501 1.01253 0.87855 1.01385 1.22189 0.86132 1.00845 0.97537 1.21286 0.94810 1.01454 0.95674 1.23234 0.97344 1.02697 1.02908 1.84629 1.13419 1.78021 1.14398 1.22740 0.94905 1.44014 1.04717 0.90932 1.25016 0.99277 0.94888 0.94660 1.70033 1.36234 1.39487 1.04787 0.86117 0.82739 0.78437 0.78253 1.19625 1.20591 1.20559 1.22891 1.01363 0.96137 0.90357 1.22132 0.81222 0.99122 0.94273 0.91527 1.21750 1.01499 1.00682 0.96299 1.87979 1.20944 1.78417 1.42777 0.91904 0.91541 0.90807 0.89461 0.93979 0.94564 0.89567 0.89942 0.95123 0.91776 0.90421 0.95900 0.90784 0.95011 0.91666 0.90745 0.92118 0.92407 0.92379 0.94021 0.89468 0.91905 0.90843 0.91505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 9.57 37.16 0.36 -0.49 16 2 C 0.09 0.70 3.43 -26.69 -0.09 0.61 16 3 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 4 C 0.03 0.20 4.93 -3.71 -0.02 0.19 16 5 N -0.54 -4.84 4.73 -234.31 -1.11 -5.95 16 6 C 0.06 0.56 4.88 -3.83 -0.02 0.54 16 7 C 0.06 0.62 4.89 -3.83 -0.02 0.60 16 8 N -0.54 -6.61 4.76 -242.92 -1.16 -7.76 16 9 C 0.02 0.20 9.13 60.06 0.55 0.75 16 10 C 0.06 0.85 4.96 -3.82 -0.02 0.83 16 11 C -0.09 -1.55 5.15 -26.72 -0.14 -1.69 16 12 C -0.11 -2.30 5.67 37.16 0.21 -2.09 16 13 S -0.13 -3.52 21.44 -107.50 -2.30 -5.82 16 14 C -0.52 -14.93 9.50 30.94 0.29 -14.64 16 15 H 0.07 2.04 7.80 -52.49 -0.41 1.63 16 16 C 0.07 2.02 5.49 -17.43 -0.10 1.92 16 17 N -0.87 -26.17 13.22 55.49 0.73 -25.43 16 18 Si 0.92 21.68 29.55 -169.99 -5.02 16.65 16 19 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 C 0.02 0.17 4.72 -3.71 -0.02 0.16 16 23 C 0.09 0.74 3.43 -26.68 -0.09 0.64 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 25 C -0.14 -0.93 9.57 37.16 0.36 -0.57 16 26 O -0.38 -3.60 10.11 -35.23 -0.36 -3.95 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.62 8.09 -51.93 -0.42 0.20 16 31 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.04 0.35 6.53 -51.93 -0.34 0.01 16 33 H 0.09 0.85 8.04 -51.93 -0.42 0.43 16 34 H 0.08 0.90 7.93 -51.93 -0.41 0.49 16 35 H 0.03 0.31 6.49 -51.93 -0.34 -0.02 16 36 H 0.06 0.63 6.47 -51.93 -0.34 0.30 16 37 H 0.08 0.94 6.30 -51.93 -0.33 0.61 16 38 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 16 39 H 0.07 0.99 7.93 -51.93 -0.41 0.58 16 40 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 41 H 0.06 1.09 6.47 -51.93 -0.34 0.75 16 42 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.06 1.23 8.14 -51.91 -0.42 0.80 16 44 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 45 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 46 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 47 H 0.09 0.71 6.38 -51.93 -0.33 0.38 16 48 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 49 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 399.30 15.07 6.02 6.02 Total: -1.00 -31.45 399.30 -11.50 -42.94 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -9.55 Total: -3.46 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: 1.26 Total: -13.24 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: -1.53 Total: -39.15 kcal Atomic # 8 Polarization: -3.60 SS G_CDS: -0.36 Total: -3.95 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -2.30 Total: -5.82 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.45 -11.50 -42.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195303918.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.438 kcal (2) G-P(sol) polarization free energy of solvation -31.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds