Wall clock time and date at job start Tue Mar 31 2020 10:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.50542 * 2 1 4 4 C 1.53094 * 109.51020 * 239.91176 * 2 1 3 5 5 N 1.47011 * 109.26017 * 183.21857 * 4 2 1 6 6 C 1.46899 * 111.00014 * 182.39205 * 5 4 2 7 7 C 1.52997 * 109.47254 * 169.99684 * 6 5 4 8 8 N 1.46894 * 109.47515 * 179.97438 * 7 6 5 9 9 C 1.46897 * 111.00086 * 293.95813 * 8 7 6 10 10 C 1.46900 * 111.00167 * 169.99883 * 8 7 6 11 11 C 1.53008 * 109.47001 * 190.00016 * 10 8 7 12 12 C 1.53005 * 109.46881 * 179.97438 * 11 10 8 13 13 S 1.81004 * 109.46871 * 180.02562 * 12 11 10 14 14 C 1.76199 * 99.99903 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99826 * 0.02562 * 14 13 12 16 16 C 1.38791 * 119.99878 * 180.02562 * 14 13 12 17 17 N 1.31631 * 120.00250 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99869 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47165 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47014 * 120.00297 * 18 16 14 21 21 H 1.48504 * 109.47043 * 239.99660 * 18 16 14 22 22 C 1.47013 * 110.75620 * 58.61258 * 5 4 2 23 23 C 1.53099 * 109.25643 * 301.38586 * 22 5 4 24 24 H 1.08994 * 109.50770 * 296.91494 * 23 22 5 25 25 C 1.52999 * 109.50705 * 176.78053 * 23 22 5 26 26 O 1.43014 * 109.25885 * 56.84790 * 23 22 5 27 27 H 1.09001 * 109.47304 * 180.09009 * 1 2 3 28 28 H 1.08999 * 109.47491 * 300.09016 * 1 2 3 29 29 H 1.09003 * 109.47097 * 60.09172 * 1 2 3 30 30 H 1.08999 * 109.50736 * 63.28054 * 4 2 1 31 31 H 1.09004 * 109.53644 * 303.17212 * 4 2 1 32 32 H 1.09002 * 109.47043 * 289.99755 * 6 5 4 33 33 H 1.09001 * 109.47354 * 49.99816 * 6 5 4 34 34 H 1.09002 * 109.47153 * 300.00004 * 7 6 5 35 35 H 1.08998 * 109.47533 * 59.99633 * 7 6 5 36 36 H 1.08994 * 109.47768 * 59.99563 * 9 8 7 37 37 H 1.09001 * 109.47114 * 180.02562 * 9 8 7 38 38 H 1.09004 * 109.46895 * 299.99681 * 9 8 7 39 39 H 1.09000 * 109.47344 * 309.99988 * 10 8 7 40 40 H 1.08997 * 109.47244 * 70.00491 * 10 8 7 41 41 H 1.09000 * 109.47048 * 300.00153 * 11 10 8 42 42 H 1.08997 * 109.46733 * 60.00162 * 11 10 8 43 43 H 1.09002 * 109.46931 * 300.00141 * 12 11 10 44 44 H 1.08995 * 109.46865 * 60.00212 * 12 11 10 45 45 H 0.97001 * 120.00488 * 179.97438 * 17 16 14 46 46 H 1.08995 * 109.50757 * 61.32024 * 22 5 4 47 47 H 1.09000 * 109.50677 * 181.45449 * 22 5 4 48 48 H 1.08997 * 109.47084 * 300.21947 * 25 23 22 49 49 H 1.09005 * 109.46729 * 60.21695 * 25 23 22 50 50 H 1.08996 * 109.47468 * 180.21722 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0412 -0.7234 -1.2486 5 7 3.5093 -0.7880 -1.2046 6 6 4.0447 -1.4260 -2.4147 7 6 5.5645 -1.2538 -2.4522 8 7 6.0999 -1.8923 -3.6619 9 6 5.9143 -3.3487 -3.6147 10 6 7.5147 -1.5479 -3.8567 11 6 7.9680 -2.0178 -5.2405 12 6 9.4414 -1.6586 -5.4436 13 16 9.9775 -2.2138 -7.0809 14 6 11.6589 -1.6880 -7.0468 15 1 12.0503 -1.1867 -6.1739 16 6 12.4802 -1.9181 -8.1417 17 7 12.0033 -2.5295 -9.2053 18 14 14.2626 -1.3600 -8.1058 19 1 14.5493 -0.7021 -6.8058 20 1 15.1531 -2.5366 -8.2729 21 1 14.5021 -0.3972 -9.2108 22 6 3.9640 -1.4883 0.0054 23 6 3.4334 -0.7571 1.2414 24 1 3.8533 0.2480 1.2778 25 6 3.8357 -1.5258 2.5016 26 8 2.0075 -0.6766 1.1660 27 1 -0.3634 -1.0277 0.0016 28 1 -0.3634 0.5152 0.8891 29 1 -0.3633 0.5124 -0.8908 30 1 1.7274 -0.1787 -2.1390 31 1 1.6332 -1.7338 -1.2772 32 1 3.7995 -2.4880 -2.4043 33 1 3.6044 -0.9601 -3.2963 34 1 5.8097 -0.1918 -2.4626 35 1 6.0048 -1.7197 -1.5707 36 1 4.8512 -3.5773 -3.5402 37 1 6.3199 -3.7963 -4.5220 38 1 6.4345 -3.7533 -2.7464 39 1 7.6395 -0.4678 -3.7809 40 1 8.1166 -2.0379 -3.0915 41 1 7.8432 -3.0980 -5.3163 42 1 7.3661 -1.5279 -6.0058 43 1 9.5657 -0.5783 -5.3679 44 1 10.0435 -2.1482 -4.6783 45 1 12.5772 -2.6900 -9.9707 46 1 3.5867 -2.5109 -0.0025 47 1 5.0536 -1.5019 0.0303 48 1 3.4168 -2.5314 2.4631 49 1 4.9225 -1.5869 2.5585 50 1 3.4544 -1.0069 3.3811 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195303918.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:05 Heat of formation + Delta-G solvation = -73.900011 kcal Electronic energy + Delta-G solvation = -24106.061878 eV Core-core repulsion = 20679.100227 eV Total energy + Delta-G solvation = -3426.961652 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.193 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.91069 -39.09809 -36.85591 -34.71217 -34.62427 -34.21135 -31.50947 -29.87414 -28.26282 -27.77482 -27.70668 -26.24533 -24.09238 -23.00404 -21.99901 -21.57973 -21.36125 -19.56001 -17.63972 -17.54203 -16.93253 -16.90090 -16.63324 -16.46253 -16.34227 -15.70154 -15.60065 -15.38712 -15.04504 -14.54878 -14.50757 -14.16415 -13.84300 -13.57190 -13.47018 -13.33436 -13.10468 -13.06269 -13.01107 -12.90513 -12.83606 -12.76243 -12.62978 -12.54646 -12.34660 -12.09084 -11.95431 -11.80857 -11.61071 -11.43896 -11.31404 -11.15313 -10.55817 -10.31286 -9.49575 -9.28772 -8.66651 -8.37670 -6.13894 1.31373 1.38144 1.49302 1.74213 2.27762 2.48748 2.70150 2.96507 3.15254 3.33641 3.70263 3.85980 3.89114 3.92769 4.02665 4.08984 4.14604 4.16019 4.23044 4.32511 4.39172 4.43821 4.44346 4.50953 4.55135 4.60360 4.63593 4.64768 4.68200 4.73031 4.76250 4.81831 4.91816 4.94242 4.98561 4.99350 5.05894 5.11802 5.19177 5.20783 5.28882 5.32764 5.39800 5.87028 5.88355 6.04542 6.13013 6.18150 6.26149 7.04618 8.71997 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.032205 B = 0.001762 C = 0.001722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.215083 B =15882.821812 C =16253.220625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.087 3.913 3 H 0.065 0.935 4 C 0.027 3.973 5 N -0.544 5.544 6 C 0.068 3.932 7 C 0.066 3.934 8 N -0.549 5.549 9 C 0.019 3.981 10 C 0.073 3.927 11 C -0.081 4.081 12 C -0.088 4.088 13 S -0.198 6.198 14 C -0.538 4.538 15 H 0.073 0.927 16 C 0.014 3.986 17 N -0.907 5.907 18 Si 0.995 3.005 19 H -0.263 1.263 20 H -0.271 1.271 21 H -0.271 1.271 22 C 0.024 3.976 23 C 0.088 3.912 24 H 0.064 0.936 25 C -0.141 4.141 26 O -0.398 6.398 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.037 0.963 32 H 0.036 0.964 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.036 0.964 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.028 0.972 39 H 0.079 0.921 40 H 0.037 0.963 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.271 0.729 46 H 0.035 0.965 47 H 0.091 0.909 48 H 0.059 0.941 49 H 0.086 0.914 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.559 3.475 22.434 31.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.029 3.971 3 H 0.083 0.917 4 C -0.101 4.101 5 N -0.269 5.269 6 C -0.060 4.060 7 C -0.062 4.062 8 N -0.274 5.274 9 C -0.129 4.129 10 C -0.057 4.057 11 C -0.120 4.120 12 C -0.237 4.237 13 S 0.030 5.970 14 C -0.686 4.686 15 H 0.091 0.909 16 C -0.191 4.191 17 N -0.544 5.544 18 Si 0.817 3.183 19 H -0.187 1.187 20 H -0.196 1.196 21 H -0.197 1.197 22 C -0.104 4.104 23 C 0.030 3.970 24 H 0.082 0.918 25 C -0.199 4.199 26 O -0.318 6.318 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.108 0.892 30 H 0.115 0.885 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.054 0.946 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.046 0.954 39 H 0.098 0.902 40 H 0.055 0.945 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.053 0.947 47 H 0.109 0.891 48 H 0.078 0.922 49 H 0.105 0.895 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -22.310 3.450 21.185 30.959 hybrid contribution 2.109 -0.339 0.943 2.335 sum -20.202 3.111 22.128 30.123 Atomic orbital electron populations 1.21746 0.91371 1.03008 1.03626 1.22261 0.95885 0.95303 0.83668 0.91739 1.22836 0.87016 1.00160 1.00089 1.62118 1.09447 1.53081 1.02286 1.21989 0.94587 0.97045 0.92370 1.22015 0.94347 0.99934 0.89952 1.61828 1.17258 1.10145 1.38126 1.22505 1.02183 0.87180 1.01012 1.21984 0.87239 1.01088 0.95368 1.21160 0.92027 1.01338 0.97499 1.23158 0.99541 1.02505 0.98507 1.84645 1.13490 1.78936 1.19887 1.23083 0.95936 1.44445 1.05141 0.90917 1.26080 1.04331 0.94628 0.94013 1.70163 1.38204 1.40455 1.05575 0.84957 0.76368 0.78256 0.78727 1.18651 1.19644 1.19651 1.22879 1.01522 0.95727 0.90299 1.22228 0.80767 0.99193 0.94831 0.91777 1.21749 1.02360 1.00191 0.95561 1.87970 1.21634 1.78652 1.43527 0.92234 0.91435 0.89169 0.88528 0.94495 0.94601 0.89917 0.90252 0.94596 0.90415 0.91549 0.95383 0.90237 0.94497 0.91826 0.91612 0.91854 0.92070 0.91961 0.94673 0.89084 0.92233 0.89498 0.91303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.57 71.98 0.69 -0.78 16 2 C 0.09 1.26 3.43 30.62 0.10 1.37 16 3 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 4 C 0.03 0.40 4.93 86.31 0.43 0.83 16 5 N -0.54 -9.08 4.73 -895.23 -4.23 -13.31 16 6 C 0.07 1.17 4.88 86.30 0.42 1.59 16 7 C 0.07 1.25 4.89 86.30 0.42 1.67 16 8 N -0.55 -12.51 4.76 -922.47 -4.39 -16.91 16 9 C 0.02 0.40 9.13 127.69 1.17 1.57 16 10 C 0.07 1.86 4.96 86.31 0.43 2.29 16 11 C -0.08 -2.64 5.15 30.60 0.16 -2.48 16 12 C -0.09 -3.54 5.67 71.98 0.41 -3.14 16 13 S -0.20 -10.68 21.44 -56.49 -1.21 -11.89 16 14 C -0.54 -31.41 9.50 67.95 0.65 -30.77 16 15 H 0.07 4.09 7.80 -2.91 -0.02 4.07 16 16 C 0.01 0.82 5.49 84.86 0.47 1.29 16 17 N -0.91 -55.17 13.22 21.65 0.29 -54.89 16 18 Si 0.99 44.17 29.55 68.60 2.03 46.20 16 19 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 20 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 21 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 22 C 0.02 0.37 4.72 86.31 0.41 0.78 16 23 C 0.09 1.33 3.43 30.63 0.10 1.44 16 24 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 25 C -0.14 -1.64 9.57 71.98 0.69 -0.96 16 26 O -0.40 -7.17 10.11 -148.98 -1.51 -8.67 16 27 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.10 1.23 8.09 -2.39 -0.02 1.21 16 31 H 0.04 0.59 8.14 -2.38 -0.02 0.57 16 32 H 0.04 0.63 6.53 -2.39 -0.02 0.61 16 33 H 0.08 1.50 8.04 -2.39 -0.02 1.48 16 34 H 0.08 1.58 7.93 -2.39 -0.02 1.56 16 35 H 0.04 0.66 6.49 -2.39 -0.02 0.64 16 36 H 0.08 1.41 6.47 -2.39 -0.02 1.39 16 37 H 0.07 1.54 6.30 -2.39 -0.02 1.52 16 38 H 0.03 0.56 8.14 -2.38 -0.02 0.54 16 39 H 0.08 1.97 7.93 -2.39 -0.02 1.95 16 40 H 0.04 0.92 8.12 -2.39 -0.02 0.90 16 41 H 0.06 2.09 6.47 -2.39 -0.02 2.08 16 42 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 43 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 44 H 0.06 2.43 8.14 -2.40 -0.02 2.41 16 45 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 46 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 47 H 0.09 1.33 6.38 -2.39 -0.02 1.32 16 48 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 49 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 50 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -67.26 399.30 -1.63 -68.88 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 0.87 Total: 15.89 kcal Atomic # 6 Polarization: -31.84 SS G_CDS: 6.53 Total: -25.30 kcal Atomic # 7 Polarization: -76.77 SS G_CDS: -8.34 Total: -85.10 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: -1.51 Total: -8.67 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 16 Polarization: -10.68 SS G_CDS: -1.21 Total: -11.89 kcal Total: -67.26 -1.63 -68.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195303918.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.017 kcal (2) G-P(sol) polarization free energy of solvation -67.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds