Wall clock time and date at job start Tue Mar 31 2020 10:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47012 * 2 1 4 4 S 1.81396 * 109.47016 * 119.99394 * 2 1 3 5 5 C 1.81408 * 102.99586 * 65.00429 * 4 2 1 6 6 C 1.52998 * 109.46903 * 179.97438 * 5 4 2 7 7 N 1.46899 * 109.47303 * 185.11323 * 6 5 4 8 8 C 1.46897 * 111.00386 * 160.37695 * 7 6 5 9 9 C 1.50704 * 109.46970 * 288.42224 * 8 7 6 10 10 H 1.07999 * 120.00151 * 356.27486 * 9 8 7 11 11 C 1.37878 * 119.99764 * 176.27108 * 9 8 7 12 12 N 1.31513 * 120.00086 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99837 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47470 * 59.99626 * 13 11 9 15 15 H 1.48499 * 109.47137 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.47099 * 299.99625 * 13 11 9 17 17 C 1.46901 * 110.99803 * 284.33317 * 7 6 5 18 18 C 1.53002 * 109.46998 * 169.99352 * 17 7 6 19 19 N 1.46897 * 109.47226 * 179.97438 * 18 17 7 20 20 C 1.47024 * 110.99561 * 46.32285 * 19 18 17 21 21 C 1.53100 * 109.25590 * 182.35286 * 20 19 18 22 22 O 1.43020 * 109.29247 * 303.21944 * 21 20 19 23 23 C 1.43017 * 113.74019 * 58.64392 * 22 21 20 24 24 C 1.47013 * 111.00657 * 170.00354 * 19 18 17 25 25 H 1.08999 * 109.47376 * 300.00291 * 1 2 3 26 26 H 1.09005 * 109.46527 * 60.00337 * 1 2 3 27 27 H 1.08996 * 109.46717 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47592 * 240.00454 * 2 1 3 29 29 H 1.08992 * 109.47372 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.46965 * 299.99946 * 3 2 1 31 31 H 1.09009 * 109.47228 * 59.99754 * 3 2 1 32 32 H 1.09001 * 109.46800 * 59.99913 * 5 4 2 33 33 H 1.08993 * 109.47310 * 299.99890 * 5 4 2 34 34 H 1.09003 * 109.47519 * 65.11657 * 6 5 4 35 35 H 1.08995 * 109.47381 * 305.11233 * 6 5 4 36 36 H 1.08998 * 109.47378 * 48.42663 * 8 7 6 37 37 H 1.09002 * 109.47143 * 168.42896 * 8 7 6 38 38 H 0.96996 * 120.00347 * 180.02562 * 12 11 9 39 39 H 1.09004 * 109.47532 * 50.00016 * 17 7 6 40 40 H 1.08997 * 109.47279 * 289.99418 * 17 7 6 41 41 H 1.09004 * 109.46846 * 60.00343 * 18 17 7 42 42 H 1.08995 * 109.47584 * 299.99818 * 18 17 7 43 43 H 1.08992 * 109.47093 * 62.43924 * 20 19 18 44 44 H 1.09003 * 109.54154 * 302.30228 * 20 19 18 45 45 H 1.08996 * 109.51005 * 183.26432 * 21 20 19 46 46 H 1.08998 * 109.50670 * 63.16945 * 21 20 19 47 47 H 1.09002 * 109.50356 * 61.27318 * 23 22 21 48 48 H 1.09001 * 109.50736 * 181.34990 * 23 22 21 49 49 H 1.09008 * 109.50433 * 57.67272 * 24 19 18 50 50 H 1.08998 * 109.50605 * 297.54933 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1347 -0.8550 1.4812 5 6 1.5664 -2.5592 1.2290 6 6 2.0050 -3.4234 2.4130 7 7 1.6528 -4.8256 2.1528 8 6 2.4384 -5.7319 3.0008 9 6 3.8681 -5.7522 2.5247 10 1 4.1509 -5.1993 1.6411 11 6 4.8151 -6.4765 3.2172 12 7 4.4706 -7.1501 4.2929 13 14 6.5874 -6.5011 2.6274 14 1 7.1268 -5.1176 2.6226 15 1 7.4006 -7.3458 3.5387 16 1 6.6438 -7.0591 1.2524 17 6 0.2125 -5.0493 2.3361 18 6 -0.1570 -6.4417 1.8207 19 7 -1.5971 -6.6657 2.0046 20 6 -2.3733 -5.5025 1.5505 21 6 -3.8604 -5.7540 1.8137 22 8 -4.2588 -6.9612 1.1585 23 6 -3.5235 -8.1138 1.5782 24 6 -2.0332 -7.8867 1.3117 25 1 -0.3634 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3632 -1.0276 -0.0005 28 1 1.8934 -0.5137 -0.8900 29 1 3.1299 1.4426 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 2.0002 -2.9546 0.3106 33 1 0.4793 -2.5721 1.1523 34 1 1.5002 -3.0839 3.3174 35 1 3.0836 -3.3383 2.5451 36 1 2.4042 -5.3844 4.0333 37 1 2.0216 -6.7374 2.9418 38 1 5.1369 -7.6594 4.7803 39 1 -0.3459 -4.2962 1.7801 40 1 -0.0346 -4.9765 3.3952 41 1 0.4013 -7.1949 2.3768 42 1 0.0900 -6.5146 0.7616 43 1 -2.2129 -5.3531 0.4829 44 1 -2.0523 -4.6147 2.0954 45 1 -4.4449 -4.9196 1.4262 46 1 -4.0291 -5.8494 2.8864 47 1 -3.6818 -8.2781 2.6441 48 1 -3.8649 -8.9861 1.0209 49 1 -1.4632 -8.7388 1.6823 50 1 -1.8679 -7.7759 0.2401 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338314511.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:01 Heat of formation + Delta-G solvation = -43.976328 kcal Electronic energy + Delta-G solvation = -25136.156001 eV Core-core repulsion = 21710.491937 eV Total energy + Delta-G solvation = -3425.664063 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.193 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.61586 -37.42621 -35.46154 -34.83682 -32.68296 -31.35499 -30.90333 -29.10156 -27.41751 -26.95364 -25.20921 -24.09315 -22.78873 -22.23350 -21.52015 -20.36188 -19.55363 -16.78137 -16.46661 -16.26458 -16.12400 -15.49187 -15.12740 -15.09785 -14.90451 -14.75733 -14.49366 -14.32950 -14.12610 -13.56661 -13.48964 -13.07206 -12.97291 -12.43297 -12.36930 -12.32579 -11.97278 -11.83868 -11.60603 -11.46631 -11.44852 -11.32052 -11.20571 -10.90867 -10.85117 -10.72827 -10.56200 -10.41796 -10.21883 -9.72736 -9.68396 -9.65023 -9.24802 -8.44456 -8.25880 -7.52044 -7.37426 -6.03712 -4.05373 1.78051 2.76884 3.33731 3.37655 3.40867 3.71197 3.88560 4.42465 4.66783 4.75341 4.79916 4.92818 5.00880 5.03384 5.10377 5.13106 5.23764 5.24866 5.32074 5.39978 5.43831 5.45050 5.51219 5.51929 5.57493 5.58219 5.66908 5.69314 5.76642 5.82067 5.86364 5.90501 5.96133 5.97780 6.02635 6.22278 6.38422 6.41017 6.58955 6.97739 7.03081 7.10343 7.22378 7.31910 7.78525 8.01464 8.11248 8.48448 9.02223 9.59108 11.06607 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.006266 B = 0.004975 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4467.169072 B = 5626.606858 C = 9730.559775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.063 4.063 3 C -0.131 4.131 4 S -0.264 6.264 5 C -0.071 4.071 6 C 0.081 3.919 7 N -0.533 5.533 8 C 0.192 3.808 9 C -0.509 4.509 10 H 0.063 0.937 11 C 0.057 3.943 12 N -0.898 5.898 13 Si 0.896 3.104 14 H -0.276 1.276 15 H -0.288 1.288 16 H -0.277 1.277 17 C 0.055 3.945 18 C 0.060 3.940 19 N -0.537 5.537 20 C 0.013 3.987 21 C 0.064 3.936 22 O -0.390 6.390 23 C 0.065 3.935 24 C 0.019 3.981 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.084 0.916 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.030 0.970 35 H 0.095 0.905 36 H -0.004 1.004 37 H 0.034 0.966 38 H 0.262 0.738 39 H 0.059 0.941 40 H 0.033 0.967 41 H 0.089 0.911 42 H 0.041 0.959 43 H 0.040 0.960 44 H 0.090 0.910 45 H 0.094 0.906 46 H 0.058 0.942 47 H 0.059 0.941 48 H 0.095 0.905 49 H 0.087 0.913 50 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.024 8.315 -7.434 17.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.192 4.192 3 C -0.189 4.189 4 S -0.038 6.038 5 C -0.219 4.219 6 C -0.048 4.048 7 N -0.259 5.259 8 C 0.067 3.933 9 C -0.547 4.547 10 H 0.081 0.919 11 C -0.144 4.144 12 N -0.537 5.537 13 Si 0.724 3.276 14 H -0.202 1.202 15 H -0.214 1.214 16 H -0.202 1.202 17 C -0.074 4.074 18 C -0.067 4.067 19 N -0.263 5.263 20 C -0.116 4.116 21 C -0.013 4.013 22 O -0.308 6.308 23 C -0.012 4.012 24 C -0.110 4.110 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.103 0.897 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.048 0.952 35 H 0.113 0.887 36 H 0.014 0.986 37 H 0.052 0.948 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.051 0.949 41 H 0.107 0.893 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.108 0.892 45 H 0.112 0.888 46 H 0.077 0.923 47 H 0.077 0.923 48 H 0.114 0.886 49 H 0.106 0.894 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -13.474 8.423 -6.562 17.191 hybrid contribution 0.576 -0.383 -1.097 1.297 sum -12.898 8.040 -7.659 17.019 Atomic orbital electron populations 1.22086 0.93612 1.02364 1.02484 1.23032 0.98496 0.99374 0.98254 1.21588 1.01866 0.93127 1.02349 1.86879 1.76258 1.08916 1.31723 1.23447 1.02316 0.92115 1.04062 1.21613 1.02746 0.87705 0.92777 1.62039 1.02517 1.03581 1.57775 1.19812 0.92523 0.90949 0.89983 1.21108 0.92526 1.29777 1.11310 0.91927 1.24967 0.99031 0.95512 0.94903 1.69942 1.34402 1.31635 1.17733 0.86591 0.84425 0.78071 0.78541 1.20166 1.21373 1.20225 1.22124 0.90977 0.95589 0.98708 1.22190 0.85684 0.98642 1.00182 1.62284 1.04910 1.02399 1.56675 1.22860 0.94329 0.95181 0.99209 1.22679 0.93904 0.87187 0.97562 1.87949 1.60533 1.16498 1.65842 1.22662 0.90065 0.88299 1.00215 1.22756 0.96808 0.94230 0.97188 0.91487 0.92113 0.92499 0.89737 0.91656 0.91512 0.91806 0.89560 0.91171 0.95217 0.88694 0.98617 0.94804 0.92851 0.92270 0.94898 0.89326 0.94043 0.94147 0.89222 0.88777 0.92335 0.92284 0.88646 0.89433 0.94041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.10 37.16 0.34 -1.07 16 2 C -0.06 -0.69 3.38 -26.73 -0.09 -0.78 16 3 C -0.13 -1.22 9.20 37.16 0.34 -0.88 16 4 S -0.26 -3.86 21.15 -107.50 -2.27 -6.14 16 5 C -0.07 -1.10 5.67 37.16 0.21 -0.89 16 6 C 0.08 1.54 4.83 -3.83 -0.02 1.52 16 7 N -0.53 -10.91 4.38 -236.07 -1.04 -11.95 16 8 C 0.19 4.82 4.59 -4.98 -0.02 4.80 16 9 C -0.51 -13.96 8.29 -34.44 -0.29 -14.25 16 10 H 0.06 1.72 7.77 -52.49 -0.41 1.31 16 11 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 12 N -0.90 -26.31 13.29 55.43 0.74 -25.57 16 13 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 C 0.05 0.95 4.05 -3.82 -0.02 0.93 16 18 C 0.06 1.00 5.24 -3.82 -0.02 0.98 16 19 N -0.54 -7.69 4.87 -234.31 -1.14 -8.83 16 20 C 0.01 0.16 4.94 -3.70 -0.02 0.14 16 21 C 0.06 0.70 7.01 37.21 0.26 0.96 16 22 O -0.39 -4.89 10.83 -35.23 -0.38 -5.27 16 23 C 0.06 0.71 7.01 37.20 0.26 0.97 16 24 C 0.02 0.23 5.63 -3.72 -0.02 0.21 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.57 6.92 -51.93 -0.36 0.21 16 28 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 32 H 0.09 1.40 8.14 -51.92 -0.42 0.98 16 33 H 0.07 0.99 5.95 -51.93 -0.31 0.69 16 34 H 0.03 0.56 8.00 -51.93 -0.42 0.15 16 35 H 0.09 2.07 7.08 -51.93 -0.37 1.70 16 36 H 0.00 -0.11 8.06 -51.93 -0.42 -0.53 16 37 H 0.03 0.89 5.95 -51.93 -0.31 0.59 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.06 0.90 4.85 -51.93 -0.25 0.65 16 40 H 0.03 0.60 8.12 -51.93 -0.42 0.18 16 41 H 0.09 1.69 6.29 -51.93 -0.33 1.36 16 42 H 0.04 0.71 8.08 -51.93 -0.42 0.29 16 43 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.09 1.08 6.05 -51.93 -0.31 0.77 16 45 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 49 H 0.09 1.06 8.14 -51.92 -0.42 0.64 16 50 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 395.19 15.07 5.96 5.96 Total: -1.00 -29.52 395.19 -11.71 -41.24 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -9.37 Total: -0.13 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: 0.82 Total: -5.83 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: -1.44 Total: -46.35 kcal Atomic # 8 Polarization: -4.89 SS G_CDS: -0.38 Total: -5.27 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -3.86 SS G_CDS: -2.27 Total: -6.14 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -29.52 -11.71 -41.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338314511.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.740 kcal (2) G-P(sol) polarization free energy of solvation -29.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds