Wall clock time and date at job start Tue Mar 31 2020 10:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47012 * 2 1 4 4 S 1.81396 * 109.47016 * 119.99394 * 2 1 3 5 5 C 1.81408 * 102.99586 * 65.00429 * 4 2 1 6 6 C 1.52998 * 109.46903 * 179.97438 * 5 4 2 7 7 N 1.46899 * 109.47303 * 185.11323 * 6 5 4 8 8 C 1.46897 * 111.00386 * 160.37695 * 7 6 5 9 9 C 1.50704 * 109.46970 * 288.42224 * 8 7 6 10 10 H 1.07999 * 120.00151 * 356.27486 * 9 8 7 11 11 C 1.37878 * 119.99764 * 176.27108 * 9 8 7 12 12 N 1.31513 * 120.00086 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99837 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47470 * 59.99626 * 13 11 9 15 15 H 1.48499 * 109.47137 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.47099 * 299.99625 * 13 11 9 17 17 C 1.46901 * 110.99803 * 284.33317 * 7 6 5 18 18 C 1.53002 * 109.46998 * 169.99352 * 17 7 6 19 19 N 1.46897 * 109.47226 * 179.97438 * 18 17 7 20 20 C 1.47024 * 110.99561 * 46.32285 * 19 18 17 21 21 C 1.53100 * 109.25590 * 182.35286 * 20 19 18 22 22 O 1.43020 * 109.29247 * 303.21944 * 21 20 19 23 23 C 1.43017 * 113.74019 * 58.64392 * 22 21 20 24 24 C 1.47013 * 111.00657 * 170.00354 * 19 18 17 25 25 H 1.08999 * 109.47376 * 300.00291 * 1 2 3 26 26 H 1.09005 * 109.46527 * 60.00337 * 1 2 3 27 27 H 1.08996 * 109.46717 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47592 * 240.00454 * 2 1 3 29 29 H 1.08992 * 109.47372 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.46965 * 299.99946 * 3 2 1 31 31 H 1.09009 * 109.47228 * 59.99754 * 3 2 1 32 32 H 1.09001 * 109.46800 * 59.99913 * 5 4 2 33 33 H 1.08993 * 109.47310 * 299.99890 * 5 4 2 34 34 H 1.09003 * 109.47519 * 65.11657 * 6 5 4 35 35 H 1.08995 * 109.47381 * 305.11233 * 6 5 4 36 36 H 1.08998 * 109.47378 * 48.42663 * 8 7 6 37 37 H 1.09002 * 109.47143 * 168.42896 * 8 7 6 38 38 H 0.96996 * 120.00347 * 180.02562 * 12 11 9 39 39 H 1.09004 * 109.47532 * 50.00016 * 17 7 6 40 40 H 1.08997 * 109.47279 * 289.99418 * 17 7 6 41 41 H 1.09004 * 109.46846 * 60.00343 * 18 17 7 42 42 H 1.08995 * 109.47584 * 299.99818 * 18 17 7 43 43 H 1.08992 * 109.47093 * 62.43924 * 20 19 18 44 44 H 1.09003 * 109.54154 * 302.30228 * 20 19 18 45 45 H 1.08996 * 109.51005 * 183.26432 * 21 20 19 46 46 H 1.08998 * 109.50670 * 63.16945 * 21 20 19 47 47 H 1.09002 * 109.50356 * 61.27318 * 23 22 21 48 48 H 1.09001 * 109.50736 * 181.34990 * 23 22 21 49 49 H 1.09008 * 109.50433 * 57.67272 * 24 19 18 50 50 H 1.08998 * 109.50605 * 297.54933 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1347 -0.8550 1.4812 5 6 1.5664 -2.5592 1.2290 6 6 2.0050 -3.4234 2.4130 7 7 1.6528 -4.8256 2.1528 8 6 2.4384 -5.7319 3.0008 9 6 3.8681 -5.7522 2.5247 10 1 4.1509 -5.1993 1.6411 11 6 4.8151 -6.4765 3.2172 12 7 4.4706 -7.1501 4.2929 13 14 6.5874 -6.5011 2.6274 14 1 7.1268 -5.1176 2.6226 15 1 7.4006 -7.3458 3.5387 16 1 6.6438 -7.0591 1.2524 17 6 0.2125 -5.0493 2.3361 18 6 -0.1570 -6.4417 1.8207 19 7 -1.5971 -6.6657 2.0046 20 6 -2.3733 -5.5025 1.5505 21 6 -3.8604 -5.7540 1.8137 22 8 -4.2588 -6.9612 1.1585 23 6 -3.5235 -8.1138 1.5782 24 6 -2.0332 -7.8867 1.3117 25 1 -0.3634 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3632 -1.0276 -0.0005 28 1 1.8934 -0.5137 -0.8900 29 1 3.1299 1.4426 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 2.0002 -2.9546 0.3106 33 1 0.4793 -2.5721 1.1523 34 1 1.5002 -3.0839 3.3174 35 1 3.0836 -3.3383 2.5451 36 1 2.4042 -5.3844 4.0333 37 1 2.0216 -6.7374 2.9418 38 1 5.1369 -7.6594 4.7803 39 1 -0.3459 -4.2962 1.7801 40 1 -0.0346 -4.9765 3.3952 41 1 0.4013 -7.1949 2.3768 42 1 0.0900 -6.5146 0.7616 43 1 -2.2129 -5.3531 0.4829 44 1 -2.0523 -4.6147 2.0954 45 1 -4.4449 -4.9196 1.4262 46 1 -4.0291 -5.8494 2.8864 47 1 -3.6818 -8.2781 2.6441 48 1 -3.8649 -8.9861 1.0209 49 1 -1.4632 -8.7388 1.6823 50 1 -1.8679 -7.7759 0.2401 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338314511.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:00 Heat of formation + Delta-G solvation = -63.151749 kcal Electronic energy + Delta-G solvation = -25136.987509 eV Core-core repulsion = 21710.491937 eV Total energy + Delta-G solvation = -3426.495572 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.66599 -38.94534 -36.67649 -35.64328 -34.78049 -32.48260 -32.15058 -30.64222 -28.64863 -28.09021 -26.63803 -25.12157 -24.52626 -23.52760 -22.52900 -21.53877 -21.01968 -18.65083 -17.70709 -17.40320 -17.12237 -16.97327 -16.40624 -16.26248 -16.11553 -15.97877 -15.83324 -15.56421 -15.27694 -14.84599 -14.70217 -14.45680 -14.16136 -14.03315 -13.66152 -13.29752 -13.22008 -13.13113 -12.91113 -12.74731 -12.67849 -12.48079 -12.35958 -12.32053 -12.21204 -12.16711 -12.05411 -11.84459 -11.55734 -11.34482 -11.29748 -10.71790 -10.67285 -10.58152 -9.42165 -9.15240 -8.67784 -8.20003 -6.29516 0.67286 1.40200 1.42639 1.50453 1.66212 2.39278 2.63065 2.94795 3.12429 3.37974 3.77910 3.85866 3.89781 3.93351 3.96207 4.00143 4.03902 4.18572 4.20055 4.31781 4.34361 4.35402 4.42579 4.51846 4.60766 4.71127 4.73259 4.73397 4.77936 4.80443 4.84243 4.85068 4.86305 4.95961 4.96855 4.98799 5.03508 5.21570 5.22994 5.24304 5.26928 5.64132 5.87419 5.95854 6.05836 6.15940 6.23195 6.55678 6.85207 7.39684 8.90246 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.006266 B = 0.004975 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4467.169072 B = 5626.606858 C = 9730.559775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.051 4.051 3 C -0.129 4.129 4 S -0.305 6.305 5 C -0.053 4.053 6 C 0.087 3.913 7 N -0.535 5.535 8 C 0.209 3.791 9 C -0.521 4.521 10 H 0.059 0.941 11 C 0.006 3.994 12 N -0.932 5.932 13 Si 0.962 3.038 14 H -0.270 1.270 15 H -0.283 1.283 16 H -0.268 1.268 17 C 0.062 3.938 18 C 0.073 3.927 19 N -0.545 5.545 20 C 0.012 3.988 21 C 0.065 3.935 22 O -0.402 6.402 23 C 0.068 3.932 24 C 0.016 3.984 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.051 0.949 28 H 0.087 0.913 29 H 0.057 0.943 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.027 0.973 35 H 0.062 0.938 36 H -0.039 1.039 37 H 0.017 0.983 38 H 0.264 0.736 39 H 0.088 0.912 40 H 0.022 0.978 41 H 0.057 0.943 42 H 0.036 0.964 43 H 0.040 0.960 44 H 0.093 0.907 45 H 0.119 0.881 46 H 0.060 0.940 47 H 0.061 0.939 48 H 0.119 0.881 49 H 0.086 0.914 50 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.250 9.682 -9.302 20.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.180 4.180 3 C -0.187 4.187 4 S -0.080 6.080 5 C -0.202 4.202 6 C -0.042 4.042 7 N -0.261 5.261 8 C 0.083 3.917 9 C -0.560 4.560 10 H 0.077 0.923 11 C -0.192 4.192 12 N -0.573 5.573 13 Si 0.787 3.213 14 H -0.195 1.195 15 H -0.208 1.208 16 H -0.193 1.193 17 C -0.066 4.066 18 C -0.055 4.055 19 N -0.271 5.271 20 C -0.116 4.116 21 C -0.012 4.012 22 O -0.320 6.320 23 C -0.009 4.009 24 C -0.112 4.112 25 H 0.085 0.915 26 H 0.103 0.897 27 H 0.070 0.930 28 H 0.106 0.894 29 H 0.076 0.924 30 H 0.112 0.888 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.045 0.955 35 H 0.080 0.920 36 H -0.021 1.021 37 H 0.035 0.965 38 H 0.073 0.927 39 H 0.106 0.894 40 H 0.040 0.960 41 H 0.076 0.924 42 H 0.054 0.946 43 H 0.058 0.942 44 H 0.112 0.888 45 H 0.137 0.863 46 H 0.078 0.922 47 H 0.079 0.921 48 H 0.137 0.863 49 H 0.104 0.896 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -14.721 9.801 -8.444 19.598 hybrid contribution 0.897 -0.745 -0.528 1.279 sum -13.825 9.057 -8.972 18.805 Atomic orbital electron populations 1.22067 0.92139 1.02407 1.03627 1.23184 0.99603 0.99576 0.95611 1.21612 1.01487 0.92043 1.03585 1.87037 1.77220 1.08620 1.35078 1.23153 1.03230 0.92128 1.01644 1.21502 1.00758 0.87401 0.94572 1.61983 1.04013 1.03792 1.56263 1.19431 0.92532 0.91021 0.88721 1.21392 0.93828 1.29559 1.11192 0.92261 1.25821 1.03424 0.95034 0.94946 1.70067 1.35850 1.32427 1.18908 0.85541 0.79119 0.78294 0.78332 1.19550 1.20790 1.19301 1.22147 0.89039 0.96928 0.98535 1.21905 0.87363 0.97196 0.99029 1.62261 1.03446 1.03933 1.57501 1.22940 0.95147 0.94415 0.99099 1.22794 0.92944 0.87593 0.97851 1.87938 1.60750 1.17115 1.66241 1.22746 0.88587 0.88775 1.00796 1.22841 0.98126 0.93410 0.96799 0.91531 0.89719 0.93009 0.89433 0.92361 0.88805 0.91890 0.90170 0.89258 0.95452 0.91963 1.02090 0.96540 0.92721 0.89396 0.95976 0.92424 0.94617 0.94218 0.88843 0.86268 0.92163 0.92096 0.86334 0.89575 0.94280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.10 71.98 0.66 -1.67 16 2 C -0.05 -1.01 3.38 30.60 0.10 -0.91 16 3 C -0.13 -2.08 9.20 71.98 0.66 -1.42 16 4 S -0.31 -8.76 21.15 -56.49 -1.19 -9.95 16 5 C -0.05 -1.62 5.67 71.98 0.41 -1.22 16 6 C 0.09 3.39 4.83 86.30 0.42 3.81 16 7 N -0.54 -22.59 4.38 -900.80 -3.95 -26.54 16 8 C 0.21 11.05 4.59 85.56 0.39 11.44 16 9 C -0.52 -29.58 8.29 25.60 0.21 -29.37 16 10 H 0.06 3.33 7.77 -2.91 -0.02 3.31 16 11 C 0.01 0.35 5.46 84.66 0.46 0.81 16 12 N -0.93 -56.23 13.29 21.45 0.28 -55.95 16 13 Si 0.96 44.76 29.54 68.60 2.03 46.78 16 14 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 15 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 16 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 17 C 0.06 2.16 4.05 86.30 0.35 2.51 16 18 C 0.07 2.49 5.24 86.30 0.45 2.95 16 19 N -0.55 -15.43 4.87 -895.21 -4.36 -19.80 16 20 C 0.01 0.28 4.94 86.31 0.43 0.70 16 21 C 0.06 1.28 7.01 72.02 0.50 1.79 16 22 O -0.40 -9.20 10.83 -148.98 -1.61 -10.81 16 23 C 0.07 1.38 7.01 72.01 0.50 1.89 16 24 C 0.02 0.40 5.63 86.31 0.49 0.89 16 25 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.08 1.00 8.14 -2.38 -0.02 0.99 16 27 H 0.05 0.89 6.92 -2.39 -0.02 0.88 16 28 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.09 1.05 8.14 -2.39 -0.02 1.04 16 31 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 32 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 33 H 0.09 2.37 5.95 -2.39 -0.01 2.36 16 34 H 0.03 1.07 8.00 -2.39 -0.02 1.05 16 35 H 0.06 2.84 7.08 -2.39 -0.02 2.82 16 36 H -0.04 -2.27 8.06 -2.39 -0.02 -2.29 16 37 H 0.02 0.93 5.95 -2.39 -0.01 0.92 16 38 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 39 H 0.09 2.57 4.85 -2.38 -0.01 2.55 16 40 H 0.02 0.83 8.12 -2.39 -0.02 0.81 16 41 H 0.06 2.32 6.29 -2.38 -0.01 2.31 16 42 H 0.04 1.25 8.08 -2.39 -0.02 1.23 16 43 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.09 2.07 6.05 -2.39 -0.01 2.06 16 45 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 49 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 50 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -65.60 395.19 -1.90 -67.50 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 0.88 Total: 16.57 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: 6.04 Total: -7.80 kcal Atomic # 7 Polarization: -94.26 SS G_CDS: -8.03 Total: -102.28 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: -1.61 Total: -10.81 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Atomic # 16 Polarization: -8.76 SS G_CDS: -1.19 Total: -9.95 kcal Total: -65.60 -1.90 -67.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338314511.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.346 kcal (2) G-P(sol) polarization free energy of solvation -65.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds