Wall clock time and date at job start Tue Mar 31 2020 11:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50694 * 109.47284 * 2 1 4 4 N 1.31895 * 119.90936 * 271.48112 * 3 2 1 5 5 N 1.28277 * 122.67452 * 180.02562 * 4 3 2 6 6 C 1.32585 * 122.19830 * 0.02562 * 5 4 3 7 7 N 1.38454 * 120.27736 * 179.97438 * 6 5 4 8 8 C 1.46502 * 120.00429 * 0.27881 * 7 6 5 9 9 C 1.53000 * 109.47326 * 179.71973 * 8 7 6 10 10 C 1.52995 * 109.47201 * 299.99751 * 9 8 7 11 11 C 1.52998 * 109.46919 * 60.00232 * 9 8 7 12 12 C 1.52997 * 109.46810 * 179.97438 * 9 8 7 13 13 C 1.50704 * 109.47141 * 180.02562 * 12 9 8 14 14 H 1.08008 * 119.99429 * 359.97438 * 13 12 9 15 15 C 1.37872 * 120.00380 * 180.02562 * 13 12 9 16 16 N 1.31520 * 120.00026 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00186 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47469 * 89.99480 * 17 15 13 19 19 H 1.48502 * 109.46994 * 209.99491 * 17 15 13 20 20 H 1.48508 * 109.47129 * 329.99286 * 17 15 13 21 21 C 1.40768 * 119.44025 * 0.27354 * 6 5 4 22 22 C 1.43200 * 121.19586 * 179.72381 * 21 6 5 23 23 N 5.99392 * 107.13648 * 35.15291 * 2 1 3 24 24 C 1.38461 * 119.90523 * 91.50452 * 3 2 1 25 25 C 1.50694 * 121.05384 * 359.97438 * 24 3 2 26 26 C 1.53003 * 109.47272 * 90.67257 * 25 24 3 27 27 H 1.08995 * 109.47343 * 184.88440 * 1 2 3 28 28 H 1.08994 * 109.46886 * 304.88825 * 1 2 3 29 29 H 1.09002 * 109.46712 * 64.88726 * 1 2 3 30 30 H 1.09004 * 109.47121 * 239.99746 * 2 1 3 31 31 H 1.08998 * 109.47240 * 120.00232 * 2 1 3 32 32 H 0.97000 * 119.99888 * 179.97438 * 7 6 5 33 33 H 1.08999 * 109.47003 * 299.72499 * 8 7 6 34 34 H 1.09004 * 109.46774 * 59.72007 * 8 7 6 35 35 H 1.09003 * 109.46783 * 60.00235 * 10 9 8 36 36 H 1.09002 * 109.46976 * 179.97438 * 10 9 8 37 37 H 1.08996 * 109.47200 * 300.00375 * 10 9 8 38 38 H 1.09001 * 109.47778 * 59.99724 * 11 9 8 39 39 H 1.09002 * 109.47287 * 179.97438 * 11 9 8 40 40 H 1.09003 * 109.47192 * 299.99843 * 11 9 8 41 41 H 1.09001 * 109.47109 * 299.99800 * 12 9 8 42 42 H 1.08996 * 109.47431 * 60.00221 * 12 9 8 43 43 H 0.96993 * 120.00238 * 179.97438 * 16 15 13 44 44 H 1.08997 * 109.46958 * 210.67014 * 25 24 3 45 45 H 1.08996 * 109.47212 * 330.66909 * 25 24 3 46 46 H 1.08997 * 109.47168 * 295.72928 * 26 25 24 47 47 H 1.08998 * 109.46976 * 55.72838 * 26 25 24 48 48 H 1.08999 * 109.46929 * 175.73256 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2237 2.0506 -1.1429 5 7 2.6498 3.2590 -1.2048 6 6 2.9305 3.9656 -0.1186 7 7 3.3887 5.2672 -0.2317 8 6 3.5595 5.8714 -1.5554 9 6 4.0664 7.3065 -1.3995 10 6 3.0522 8.1211 -0.5942 11 6 5.4094 7.2961 -0.6666 12 6 4.2453 7.9371 -2.7819 13 6 4.7453 9.3505 -2.6285 14 1 4.9177 9.7583 -1.6433 15 6 4.9815 10.1234 -3.7455 16 7 4.7709 9.6270 -4.9451 17 14 5.6005 11.8754 -3.5552 18 1 7.0854 11.8775 -3.5452 19 1 5.1120 12.6990 -4.6903 20 1 5.0961 12.4428 -2.2789 21 6 2.7648 3.3792 1.1503 22 6 3.0623 4.1059 2.3478 23 7 3.2961 4.6832 3.2979 24 6 2.2922 2.0611 1.1998 25 6 2.0804 1.3601 2.5169 26 6 3.3731 0.6555 2.9333 27 1 -0.3634 -1.0239 0.0875 28 1 -0.3633 0.5878 0.8429 29 1 -0.3633 0.4362 -0.9306 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.5926 5.7806 0.5656 33 1 4.2820 5.2911 -2.1292 34 1 2.6026 5.8788 -2.0775 35 1 2.9252 7.6716 0.3907 36 1 3.4136 9.1433 -0.4827 37 1 2.0954 8.1284 -1.1163 38 1 6.1321 6.7158 -1.2404 39 1 5.7709 8.3185 -0.5559 40 1 5.2825 6.8466 0.3182 41 1 4.9681 7.3567 -3.3553 42 1 3.2888 7.9445 -3.3045 43 1 4.9368 10.1708 -5.7310 44 1 1.8038 2.0907 3.2770 45 1 1.2829 0.6244 2.4128 46 1 3.6090 -0.1270 2.2121 47 1 4.1877 1.3791 2.9638 48 1 3.2435 0.2124 3.9207 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340939930.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:40 Heat of formation + Delta-G solvation = 55.164380 kcal Electronic energy + Delta-G solvation = -26324.062106 eV Core-core repulsion = 22799.545906 eV Total energy + Delta-G solvation = -3524.516200 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.46485 -38.19963 -37.18109 -36.28230 -34.87995 -33.49808 -32.33583 -31.24673 -29.70258 -27.12008 -26.58095 -26.52951 -25.84789 -24.71023 -22.96738 -22.83362 -21.40333 -19.23312 -18.41135 -17.84677 -17.30093 -16.34189 -15.79954 -15.31165 -14.89780 -14.68960 -14.50763 -14.25528 -14.10203 -13.97261 -13.74129 -13.43533 -13.23773 -13.20575 -12.97760 -12.88908 -12.81983 -12.44338 -12.19672 -12.09027 -11.97509 -11.63265 -11.39477 -11.34994 -11.06067 -10.93774 -10.86413 -10.73615 -10.54669 -10.47739 -10.29378 -9.96830 -9.85302 -9.75568 -9.26414 -8.97313 -8.38111 -8.03871 -6.02286 -4.03666 0.15554 0.98203 2.26971 2.69727 2.95949 3.29667 3.36863 3.38829 3.42839 3.52505 3.85558 4.14954 4.36737 4.40826 4.44920 4.74245 4.78373 4.80532 5.05500 5.05871 5.11759 5.28693 5.32656 5.33179 5.39497 5.43614 5.54074 5.56742 5.63995 5.69004 5.73826 5.83164 5.89385 6.02303 6.09139 6.14389 6.17851 6.30868 6.56608 6.57098 6.86695 6.99829 7.00839 7.07809 7.13634 7.33691 7.60418 7.71926 7.95983 8.37524 8.73890 9.00748 9.59687 11.09092 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.022641 B = 0.002779 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.393236 B =10074.223451 C =10919.443477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.062 4.062 3 C 0.001 3.999 4 N -0.166 5.166 5 N -0.290 5.290 6 C 0.385 3.615 7 N -0.688 5.688 8 C 0.131 3.869 9 C -0.074 4.074 10 C -0.128 4.128 11 C -0.128 4.128 12 C 0.038 3.962 13 C -0.513 4.513 14 H 0.059 0.941 15 C 0.057 3.943 16 N -0.893 5.893 17 Si 0.888 3.112 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.109 4.109 22 C 0.258 3.742 23 N -0.400 5.400 24 C 0.020 3.980 25 C -0.095 4.095 26 C -0.147 4.147 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.409 0.591 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.024 0.976 36 H 0.069 0.931 37 H 0.050 0.950 38 H 0.050 0.950 39 H 0.069 0.931 40 H 0.025 0.975 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.260 0.740 44 H 0.079 0.921 45 H 0.095 0.905 46 H 0.065 0.935 47 H 0.057 0.943 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.763 -20.600 13.893 25.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.101 4.101 3 C -0.148 4.148 4 N -0.010 5.010 5 N -0.144 5.144 6 C 0.139 3.861 7 N -0.317 5.317 8 C 0.008 3.992 9 C -0.074 4.074 10 C -0.186 4.186 11 C -0.186 4.186 12 C 0.001 3.999 13 C -0.551 4.551 14 H 0.077 0.923 15 C -0.144 4.144 16 N -0.533 5.533 17 Si 0.716 3.284 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.128 4.128 22 C -0.057 4.057 23 N -0.076 5.076 24 C 0.006 3.994 25 C -0.133 4.133 26 C -0.205 4.205 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.247 0.753 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.043 0.957 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.044 0.956 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.070 0.930 44 H 0.097 0.903 45 H 0.113 0.887 46 H 0.084 0.916 47 H 0.076 0.924 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.389 -19.511 13.304 24.464 hybrid contribution 0.451 1.238 1.431 1.945 sum -5.938 -18.272 14.735 24.213 Atomic orbital electron populations 1.21768 0.94245 1.02029 1.02633 1.20330 0.96408 0.89451 1.03878 1.22258 1.04315 0.99377 0.88813 1.72605 1.02976 1.00840 1.24574 1.73336 1.17158 1.01143 1.22812 1.20099 0.88911 0.87987 0.89114 1.45014 1.66552 1.08841 1.11336 1.21853 1.01787 0.94260 0.81268 1.20949 0.94576 0.91316 1.00572 1.21776 0.98852 1.01094 0.96831 1.21778 0.97032 1.02606 0.97140 1.19078 0.97448 0.95237 0.88176 1.21166 1.43939 0.97571 0.92404 0.92321 1.24996 0.95787 0.98191 0.95420 1.69957 1.49005 1.36796 0.97513 0.86656 0.79047 0.85008 0.77651 1.20756 1.21286 1.19978 1.16344 1.13951 0.94891 0.87633 1.25063 0.94062 0.93808 0.92801 1.81304 1.08680 1.07777 1.09878 1.20858 0.90318 0.90787 0.97415 1.20747 1.00149 1.00187 0.92192 1.21746 0.96106 1.00713 1.01927 0.91861 0.92727 0.91901 0.89503 0.90023 0.75279 0.90941 0.90957 0.95655 0.91214 0.93110 0.93111 0.91220 0.95646 0.96157 0.96150 0.92993 0.90264 0.88672 0.91629 0.92417 0.91355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.77 37.16 0.36 -0.54 16 2 C -0.06 -0.41 5.58 -27.89 -0.16 -0.57 16 3 C 0.00 0.01 6.11 -82.49 -0.50 -0.50 16 4 N -0.17 -2.24 11.39 33.56 0.38 -1.85 16 5 N -0.29 -4.41 10.74 31.40 0.34 -4.07 16 6 C 0.38 5.39 7.58 -154.77 -1.17 4.21 16 7 N -0.69 -10.03 5.03 -60.07 -0.30 -10.33 16 8 C 0.13 2.19 4.60 -4.04 -0.02 2.17 16 9 C -0.07 -1.38 0.54 -154.51 -0.08 -1.46 16 10 C -0.13 -2.29 8.05 37.15 0.30 -1.99 16 11 C -0.13 -2.29 8.05 37.16 0.30 -1.99 16 12 C 0.04 0.91 4.04 -27.88 -0.11 0.80 16 13 C -0.51 -13.50 7.65 -34.44 -0.26 -13.77 16 14 H 0.06 1.50 5.68 -52.48 -0.30 1.20 16 15 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 16 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16 17 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 21 C -0.11 -1.29 5.79 -106.31 -0.62 -1.90 16 22 C 0.26 3.17 12.96 -22.47 -0.29 2.88 16 23 N -0.40 -5.44 18.54 41.84 0.78 -4.67 16 24 C 0.02 0.19 5.21 -103.84 -0.54 -0.35 16 25 C -0.09 -0.63 5.04 -27.88 -0.14 -0.77 16 26 C -0.15 -0.88 9.81 37.16 0.36 -0.51 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.05 0.32 7.73 -51.93 -0.40 -0.08 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.37 5.96 -51.93 -0.31 0.07 16 32 H 0.41 5.75 5.09 -40.82 -0.21 5.54 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.02 0.39 6.86 -51.93 -0.36 0.03 16 36 H 0.07 1.35 6.62 -51.93 -0.34 1.00 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.07 1.34 6.62 -51.93 -0.34 0.99 16 40 H 0.02 0.39 6.86 -51.93 -0.36 0.03 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 44 H 0.08 0.56 7.28 -51.93 -0.38 0.18 16 45 H 0.09 0.44 6.22 -51.93 -0.32 0.11 16 46 H 0.06 0.34 7.48 -51.93 -0.39 -0.05 16 47 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 386.36 15.07 5.82 5.82 Total: -1.00 -29.69 386.36 -7.43 -37.12 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -7.49 Total: -0.01 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: -2.67 Total: -12.79 kcal Atomic # 7 Polarization: -48.23 SS G_CDS: 1.93 Total: -46.30 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -29.69 -7.43 -37.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340939930.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.285 kcal (2) G-P(sol) polarization free energy of solvation -29.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds