Wall clock time and date at job start Tue Mar 31 2020 11:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50694 * 109.47284 * 2 1 4 4 N 1.31895 * 119.90936 * 271.48112 * 3 2 1 5 5 N 1.28277 * 122.67452 * 180.02562 * 4 3 2 6 6 C 1.32585 * 122.19830 * 0.02562 * 5 4 3 7 7 N 1.38454 * 120.27736 * 179.97438 * 6 5 4 8 8 C 1.46502 * 120.00429 * 0.27881 * 7 6 5 9 9 C 1.53000 * 109.47326 * 179.71973 * 8 7 6 10 10 C 1.52995 * 109.47201 * 299.99751 * 9 8 7 11 11 C 1.52998 * 109.46919 * 60.00232 * 9 8 7 12 12 C 1.52997 * 109.46810 * 179.97438 * 9 8 7 13 13 C 1.50704 * 109.47141 * 180.02562 * 12 9 8 14 14 H 1.08008 * 119.99429 * 359.97438 * 13 12 9 15 15 C 1.37872 * 120.00380 * 180.02562 * 13 12 9 16 16 N 1.31520 * 120.00026 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00186 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47469 * 89.99480 * 17 15 13 19 19 H 1.48502 * 109.46994 * 209.99491 * 17 15 13 20 20 H 1.48508 * 109.47129 * 329.99286 * 17 15 13 21 21 C 1.40768 * 119.44025 * 0.27354 * 6 5 4 22 22 C 1.43200 * 121.19586 * 179.72381 * 21 6 5 23 23 N 5.99392 * 107.13648 * 35.15291 * 2 1 3 24 24 C 1.38461 * 119.90523 * 91.50452 * 3 2 1 25 25 C 1.50694 * 121.05384 * 359.97438 * 24 3 2 26 26 C 1.53003 * 109.47272 * 90.67257 * 25 24 3 27 27 H 1.08995 * 109.47343 * 184.88440 * 1 2 3 28 28 H 1.08994 * 109.46886 * 304.88825 * 1 2 3 29 29 H 1.09002 * 109.46712 * 64.88726 * 1 2 3 30 30 H 1.09004 * 109.47121 * 239.99746 * 2 1 3 31 31 H 1.08998 * 109.47240 * 120.00232 * 2 1 3 32 32 H 0.97000 * 119.99888 * 179.97438 * 7 6 5 33 33 H 1.08999 * 109.47003 * 299.72499 * 8 7 6 34 34 H 1.09004 * 109.46774 * 59.72007 * 8 7 6 35 35 H 1.09003 * 109.46783 * 60.00235 * 10 9 8 36 36 H 1.09002 * 109.46976 * 179.97438 * 10 9 8 37 37 H 1.08996 * 109.47200 * 300.00375 * 10 9 8 38 38 H 1.09001 * 109.47778 * 59.99724 * 11 9 8 39 39 H 1.09002 * 109.47287 * 179.97438 * 11 9 8 40 40 H 1.09003 * 109.47192 * 299.99843 * 11 9 8 41 41 H 1.09001 * 109.47109 * 299.99800 * 12 9 8 42 42 H 1.08996 * 109.47431 * 60.00221 * 12 9 8 43 43 H 0.96993 * 120.00238 * 179.97438 * 16 15 13 44 44 H 1.08997 * 109.46958 * 210.67014 * 25 24 3 45 45 H 1.08996 * 109.47212 * 330.66909 * 25 24 3 46 46 H 1.08997 * 109.47168 * 295.72928 * 26 25 24 47 47 H 1.08998 * 109.46976 * 55.72838 * 26 25 24 48 48 H 1.08999 * 109.46929 * 175.73256 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2237 2.0506 -1.1429 5 7 2.6498 3.2590 -1.2048 6 6 2.9305 3.9656 -0.1186 7 7 3.3887 5.2672 -0.2317 8 6 3.5595 5.8714 -1.5554 9 6 4.0664 7.3065 -1.3995 10 6 3.0522 8.1211 -0.5942 11 6 5.4094 7.2961 -0.6666 12 6 4.2453 7.9371 -2.7819 13 6 4.7453 9.3505 -2.6285 14 1 4.9177 9.7583 -1.6433 15 6 4.9815 10.1234 -3.7455 16 7 4.7709 9.6270 -4.9451 17 14 5.6005 11.8754 -3.5552 18 1 7.0854 11.8775 -3.5452 19 1 5.1120 12.6990 -4.6903 20 1 5.0961 12.4428 -2.2789 21 6 2.7648 3.3792 1.1503 22 6 3.0623 4.1059 2.3478 23 7 3.2961 4.6832 3.2979 24 6 2.2922 2.0611 1.1998 25 6 2.0804 1.3601 2.5169 26 6 3.3731 0.6555 2.9333 27 1 -0.3634 -1.0239 0.0875 28 1 -0.3633 0.5878 0.8429 29 1 -0.3633 0.4362 -0.9306 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.5926 5.7806 0.5656 33 1 4.2820 5.2911 -2.1292 34 1 2.6026 5.8788 -2.0775 35 1 2.9252 7.6716 0.3907 36 1 3.4136 9.1433 -0.4827 37 1 2.0954 8.1284 -1.1163 38 1 6.1321 6.7158 -1.2404 39 1 5.7709 8.3185 -0.5559 40 1 5.2825 6.8466 0.3182 41 1 4.9681 7.3567 -3.3553 42 1 3.2888 7.9445 -3.3045 43 1 4.9368 10.1708 -5.7310 44 1 1.8038 2.0907 3.2770 45 1 1.2829 0.6244 2.4128 46 1 3.6090 -0.1270 2.2121 47 1 4.1877 1.3791 2.9638 48 1 3.2435 0.2124 3.9207 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340939930.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:40 Heat of formation + Delta-G solvation = 39.760982 kcal Electronic energy + Delta-G solvation = -26324.730047 eV Core-core repulsion = 22799.545906 eV Total energy + Delta-G solvation = -3525.184141 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.41591 -39.56035 -38.18011 -37.27391 -35.99188 -34.66370 -33.90229 -32.07712 -30.66003 -28.99916 -28.06818 -27.72111 -26.81708 -25.70254 -24.53723 -23.57925 -22.29096 -20.43274 -19.49837 -18.92714 -18.49171 -18.34565 -16.78122 -16.52535 -16.19157 -15.80948 -15.55355 -15.38775 -15.02446 -14.86812 -14.76993 -14.48823 -14.42172 -14.33478 -14.23900 -14.03559 -13.97317 -13.56690 -13.41697 -12.97465 -12.85194 -12.73828 -12.71834 -12.53322 -12.40167 -12.26938 -12.15452 -12.01745 -11.87178 -11.83406 -11.65647 -11.44271 -11.07566 -10.89327 -10.78354 -10.65444 -10.51732 -9.15059 -8.14938 -6.22203 -0.76869 0.05811 1.28660 1.40786 1.41178 1.51198 1.72365 1.85051 2.43035 2.46188 2.57149 2.98291 3.19520 3.37918 3.52288 3.64679 3.90068 4.03325 4.04937 4.08992 4.20917 4.29147 4.42065 4.47572 4.54859 4.59849 4.66108 4.66261 4.73573 4.80362 4.86740 4.99952 5.03480 5.05614 5.09121 5.13133 5.18194 5.32703 5.34133 5.35066 5.43915 5.45205 5.53252 5.54174 5.75671 5.76125 5.88842 6.13265 6.23865 6.30472 6.92106 7.45166 7.77334 8.97335 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.022641 B = 0.002779 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.393236 B =10074.223451 C =10919.443477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.062 4.062 3 C 0.015 3.985 4 N -0.198 5.198 5 N -0.328 5.328 6 C 0.375 3.625 7 N -0.691 5.691 8 C 0.150 3.850 9 C -0.066 4.066 10 C -0.122 4.122 11 C -0.122 4.122 12 C 0.044 3.956 13 C -0.516 4.516 14 H 0.067 0.933 15 C -0.001 4.001 16 N -0.935 5.935 17 Si 0.954 3.046 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.263 1.263 21 C -0.110 4.110 22 C 0.275 3.725 23 N -0.420 5.420 24 C 0.035 3.965 25 C -0.094 4.094 26 C -0.147 4.147 27 H 0.086 0.914 28 H 0.059 0.941 29 H 0.042 0.958 30 H 0.087 0.913 31 H 0.113 0.887 32 H 0.411 0.589 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.044 0.956 38 H 0.044 0.956 39 H 0.055 0.945 40 H 0.053 0.947 41 H -0.008 1.008 42 H -0.008 1.008 43 H 0.260 0.740 44 H 0.078 0.922 45 H 0.125 0.875 46 H 0.076 0.924 47 H 0.038 0.962 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.285 -22.395 16.799 28.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.101 4.101 3 C -0.135 4.135 4 N -0.039 5.039 5 N -0.180 5.180 6 C 0.129 3.871 7 N -0.323 5.323 8 C 0.027 3.973 9 C -0.067 4.067 10 C -0.179 4.179 11 C -0.179 4.179 12 C 0.006 3.994 13 C -0.554 4.554 14 H 0.085 0.915 15 C -0.198 4.198 16 N -0.576 5.576 17 Si 0.780 3.220 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.188 1.188 21 C -0.129 4.129 22 C -0.041 4.041 23 N -0.097 5.097 24 C 0.021 3.979 25 C -0.131 4.131 26 C -0.205 4.205 27 H 0.105 0.895 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.106 0.894 31 H 0.132 0.868 32 H 0.250 0.750 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.010 0.990 42 H 0.010 0.990 43 H 0.069 0.931 44 H 0.097 0.903 45 H 0.143 0.857 46 H 0.095 0.905 47 H 0.057 0.943 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.918 -21.330 16.217 27.673 hybrid contribution 0.544 1.591 0.582 1.779 sum -6.375 -19.739 16.799 26.692 Atomic orbital electron populations 1.21769 0.93446 1.03471 1.01855 1.20547 0.96931 0.87103 1.05526 1.22919 1.01964 1.00608 0.88044 1.72548 1.04345 1.00579 1.26419 1.73250 1.18631 1.02231 1.23900 1.20131 0.89504 0.87646 0.89842 1.44656 1.68149 1.09413 1.10055 1.21365 1.00618 0.92875 0.82482 1.20736 0.95894 0.92371 0.97681 1.21683 0.97964 1.00210 0.98025 1.21687 0.95963 1.01879 0.98368 1.18922 0.94913 0.94705 0.90815 1.21565 1.42739 0.98433 0.92652 0.91452 1.25873 0.96300 1.02479 0.95188 1.70101 1.50694 1.38440 0.98332 0.85602 0.78541 0.79994 0.77847 1.20183 1.21337 1.18770 1.16400 1.14206 0.95754 0.86581 1.24979 0.93401 0.93261 0.92436 1.81322 1.09424 1.08345 1.10585 1.21295 0.87986 0.89764 0.98876 1.20924 1.01558 1.00663 0.90004 1.21778 0.94802 1.00479 1.03410 0.89538 0.92177 0.93873 0.89431 0.86848 0.74955 0.92168 0.92192 0.92791 0.92600 0.93714 0.93719 0.92560 0.92789 0.98964 0.98956 0.93093 0.90342 0.85679 0.90475 0.94280 0.89463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.77 71.98 0.70 -0.64 16 2 C -0.06 -0.64 5.58 29.85 0.17 -0.47 16 3 C 0.02 0.28 6.11 42.60 0.26 0.54 16 4 N -0.20 -5.28 11.39 -47.74 -0.54 -5.82 16 5 N -0.33 -10.15 10.74 -54.58 -0.59 -10.73 16 6 C 0.37 10.44 7.58 133.60 1.01 11.46 16 7 N -0.69 -20.12 5.03 -343.95 -1.73 -21.85 16 8 C 0.15 5.21 4.60 86.38 0.40 5.61 16 9 C -0.07 -2.55 0.54 -52.19 -0.03 -2.57 16 10 C -0.12 -4.32 8.05 71.98 0.58 -3.74 16 11 C -0.12 -4.32 8.05 71.98 0.58 -3.74 16 12 C 0.04 2.22 4.04 29.85 0.12 2.34 16 13 C -0.52 -27.78 7.65 25.60 0.20 -27.58 16 14 H 0.07 3.45 5.68 -2.91 -0.02 3.44 16 15 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 16 N -0.93 -56.49 13.29 21.45 0.28 -56.21 16 17 Si 0.95 43.96 29.54 68.60 2.03 45.98 16 18 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 19 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 20 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 21 C -0.11 -2.47 5.79 -20.96 -0.12 -2.59 16 22 C 0.27 6.30 12.96 88.33 1.15 7.45 16 23 N -0.42 -10.75 18.54 19.00 0.35 -10.40 16 24 C 0.04 0.59 5.21 -19.36 -0.10 0.49 16 25 C -0.09 -0.89 5.04 29.85 0.15 -0.74 16 26 C -0.15 -1.22 9.81 71.98 0.71 -0.51 16 27 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.06 0.49 7.73 -2.39 -0.02 0.47 16 29 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.11 0.48 5.96 -2.39 -0.01 0.46 16 32 H 0.41 11.18 5.09 -92.71 -0.47 10.71 16 33 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 35 H 0.05 1.60 6.86 -2.39 -0.02 1.58 16 36 H 0.05 2.13 6.62 -2.39 -0.02 2.12 16 37 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.04 1.61 8.14 -2.39 -0.02 1.60 16 39 H 0.06 2.14 6.62 -2.39 -0.02 2.12 16 40 H 0.05 1.60 6.86 -2.39 -0.02 1.58 16 41 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 42 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 43 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 44 H 0.08 0.84 7.28 -2.39 -0.02 0.82 16 45 H 0.13 0.50 6.22 -2.39 -0.01 0.48 16 46 H 0.08 0.47 7.48 -2.39 -0.02 0.45 16 47 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 48 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 Total: -1.00 -67.05 386.36 6.53 -60.51 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 0.50 Total: 12.83 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: 6.23 Total: -14.31 kcal Atomic # 7 Polarization: -102.79 SS G_CDS: -2.22 Total: -105.01 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -67.05 6.53 -60.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340939930.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.275 kcal (2) G-P(sol) polarization free energy of solvation -67.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds